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At least 91 records · Page 5

Micropatterning tractional forces in living cells

Here we describe a method for quantifying traction in cells that are physically constrained within micron-sized adhesive islands of defined shape and size on the surface of flexible polyacrylamide gels that contain fluorescent microbeads (0.2-microm diameter). Smooth muscle cells were plated onto square (50 x 50 microm) or circular (25- or 50-microm diameter) adhesive islands that were created on the surface of the gels by applying a collagen coating through microengineered holes in an elastomeric membrane that was later removed. Adherent cells spread to take on the size and shape of the islands and cell tractions were quantitated by mapping displacement fields of the fluorescent microbeads within the gel. Cells on round islands did not exhibit any preferential direction of force application, but they exerted their strongest traction at sites where they formed protrusions. When cells were confined to squares, traction was highest in the corners both in the absence and presence of the contractile agonist, histamine, and cell protrusions were also observed in these regions. Quantitation of the mean traction exerted by cells cultured on the different islands revealed that cell tension increased as cell spreading was promoted. These results provide a mechanical basis for past studies that demonstrated a similar correlation between spreading and growth within various anchorage-dependent cells. This new approach for analyzing the spatial distribution of mechanical forces beneath individual cells that are experimentally constrained to defined sizes and shapes may provide additional insight into the biophysical basis of cell regulation. Copyright 2002 Wiley-Liss, Inc.

NASA Discipline Cell Biology↗

Temporal study of wake formation behind a conducting body

The temporal evolution of the wake of a conducting body is studied experimentally in a pulsed plasma device. Three-dimensional measurements of the plasma potential, density, particle energy distribution, and ion currents are measured throughout the near- and mid-wake regions during the wake formation. It is found that the potential behind the conducting body is initially negative. This negative potential is caused by the higher mobility of the electrons, allowing them to flow into the ion free wake region. The negative potential in the wake region induces an electric field that pulls ions into the region behind the conducting body. However, the dominant factor in determining the length of the near wake is the thermal energy spread of the ions. At later times, as the sheath forms around the conducting body, ions are deflected by the potential gradient in the sheath region. This deflection, in addition to the thermal energy spread of the ions, determines the length of the near wake.

Meassick, S.↗

Flame Spread Across Liquids: Experimental Results

The goal of our research on flame spread across a pool of liquid fuel is the quantitative identification of the mechanisms that control the rate and nature of flame spread when the initial temperature of the liquid pool is below the fuel's flash point temperature. Besides numerous experiments in drop towers and 1 g laboratories, we have flown five microgravity (mu-g) experiments on sounding rockets. As described in earlier papers, the first three flights examined the effect of forced opposed airflow over a 2.5 cm deep x 2 cm wide x 30 cm long pool of 1-butanol in mu-g. It was found that the flame spread is much slower and steadier than in 1 g where flame spread has a pulsating character. It was speculated that the flame spread in mu-g resembled the character of pseudo-uniform spread in 1 g; Ito et al later confirmed this conclusively in 1 g experiments. Much of the mu-g flame is also farther from the surface, dimmer, and with less soot, when compared to the 1 g flame. Three-dimensional liquid-phase flow patterns that control the liquid preheating were discovered in both 1 g and mu-g. Our numerical model, restricted to two dimensions, had predicted faster, pulsating flame spread in mu-g for opposed airflow. In examining the differences in the dimensionality of the model and experiment, it was noted that the experiment allowed gas expansion in the lateral direction (across the width of the pool), for which the model could not account. Such lateral expansion could reduce the expansion in the forward and upward directions. Because only these latter directions could be modeled, it was decided to artificially reduce the gas thermal expansion in the predictions. When this was done, satisfactory agreement could be obtained between the predicted and observed spread rates and the steadiness of the spread in microgravity. In 1 g, however, the predicted flame spread character also changed to pseudo-uniform, which disagreed with our 1 g experiments where the spread is pulsating. It was then speculated that gas-phase buoyant flow might oppose the lateral gas expansion, so that the 1 g experiments retained their pulsating flame spread character. If this speculation was valid, a difference in lateral gas expansion should be observable when comparing 1 g and mu-g experiments. Specifically, it was anticipated that greater flow divergence caused by lateral expansion would be measured in mu-g in the absence of a buoyant flow directed towards the flame.

Ross, H. D.↗

Compositional evidence regarding the origins of rims on Semarkona chondrules

This paper presents results on neutron activation analyses of the interiors and the abraded surfaces of seven chondrules from Semarkona chondrite. The results showed that six of seven chondrule rims have enhanced contents of siderophiles and chalcophiles relative to chondrule interiors, indicating that, during chondrule formation, metal/sulfide melts migrated to the exterior of the chondrule; later reheating caused this material to spread out into fine-grained rim material. For nonvolatile elements, the lithophile and siderophile element abundance patterns in the surfaces are generally similar to those in the corresponding interiors, indicating that the surface and the interior metal might have originated from a single precursor. The volatile to moderately-volatile elements K, As, and Zn tend to be enriched in the surface, compared with other elements of similar mineral affinity.

Grossman, Jeffrey N.↗

Paradigms and Paradoxes: Dawn at Vesta

While confirming the popular paradigm of Vesta as the parent body of the HED meteorites, Dawn measurements have discovered many unexpected aspects of the vestan surface. First, an olivine layer was not found in the bottom of the large basin near the south pole of Vesta. In fact, while patches of olivine have been found in the north, it is rare on the surface. Secondly, while Vesta has little gravity and appears to have completely differentiated, it is not completely dry evidence for transient flows and pits resulting from devolatization have been found, implying a substantial amount of accessible water. Thirdly, transport of material to the surface of Vesta from elsewhere in the asteroid belt appears as dark material buried near the top of the crust to Vesta. This may have arrived in a single large impact and been spread around the surface and buried, later to be re-excavated. However, it is not certain that this is the only scenario possible for the source of this material. In short, Dawn's observations of Vesta have been both reassuring but unsettling at the same time.

Raymond, C. A.↗

Diffusion Flame Tip Instabilities of a Wide Sample in Microgravity

This work is a study of diffusion flame tip instabilities of a wide thermally thin sample in a microgravity environment. The purpose of this work is to determine the thermodiffusive and hydrodynamic instability mechanisms which cause a spreading diffusion flame to become corrugated and later fragment into smaller separate flames that we call flamelets. These thermodiffusive and hydrodynamic mechanisms are prominent forces in the near limit because buoyancy is quashed in the microgravity environment. A fundamental knowledge of the underlying mechanisms controlling the extinction limit of a diffusion flame can be applied to any real world device involving a spreading diffusion flame as well as fire safety applications on earth and in space. Our work, which combines microgravity experiments, theoretical models, and numerical computation, is a joint effort between NASA and Michigan State University. Experiments in the 2.2 second drop tower at NASA Lewis Research Center in the Microgravity Combustion Branch have been a preliminary step in locating a region where these instabilities are prevalent. These positive results will be discussed as well as the second phase of our project and future plans and recommendations.

Oravecz, Lisa↗

Increased seminal root number associated with domestication improves nitrogen and phosphorus acquisition in maize seedlings

Abstract Background and Aims Domesticated maize (Zea mays ssp. mays) generally forms between two and six seminal roots, while its wild ancestor, Mexican annual teosinte (Zea mays ssp. parviglumis), typically lacks seminal roots. Maize also produces larger seeds than teosinte, and it generally has higher growth rates as a seedling. Maize was originally domesticated in the tropical soils of southern Mexico, but it was later brought to the Mexican highlands before spreading to other parts of the continent, where it experienced different soil resource constraints. The aims of this study were to understand the impacts of increased seminal root number on seedling nitrogen and phosphorus acquisition and to model how differences in maize and teosinte phenotypes might have contributed to increased seminal root number in domesticated maize. Methods Seedling root system architectural models of a teosinte accession and a maize landrace were constructed by parameterizing the functional–structural plant model OpenSimRoot using plants grown in mesocosms. Seedling growth was simulated in a low-phosphorus environment, multiple low-nitrogen environments, and at variable planting densities. Models were also constructed to combine individual components of the maize and teosinte phenotypes. Key Results Seminal roots contributed ~35 % of the nitrogen and phosphorus acquired by maize landrace seedlings in the first 25 d after planting. Increased seminal root number improved plant nitrogen acquisition under low-nitrogen environments with varying precipitation patterns, fertilization rates, soil textures and planting densities. Models suggested that the optimal number of seminal roots for nutrient acquisition in teosinte is constrained by its limited seed carbohydrate reserves. Conclusions Seminal roots can improve the acquisition of both nitrogen and phosphorus in maize seedlings, and the increase in seed size associated with maize domestication may have facilitated increased seminal root number.

59 BASIC BIOLOGICAL SCIENCES↗

Conditions during formation of the Earth

The formation of the Earth starts with gravitational instabilities in the gas of primitive solar nebula, which form giant gaseous protoplanets. The envelopes of these are thermally evaporated, but solids can gravitationally settle to the center of the protoplanets, and most of the core and mantle of the Earth were formed at that time (age about 10,000 years). The protoearth then survived a period of high temperatures in the surrounding gas (age about 10 to the 5th years). While and after the gas was thermally stabilized and removed from the solar system, the Earth grew by bombardment of planetesimals and its early atmosphere was established. A late major collision led to formation of the Moon and loss of the primordial atmosphere (age about 10 to the 8th years). The present atmosphere resulted from still later accretion. The presence of this atmosphere spreads out the mantle cooling and solidification over hundreds of millions of years.

Cameron, A. G. W.↗

Global MHD Simulations of the Substorm Current Wedge and Dipolarization

This paper presents results from global MHD simulations showing the evolution of the plasma and field in the near-Earth tail during the substorm phases. The late growth phase is characterized by pronounced thinning of the plasma sheet and stretching of the field in the region between approximately -6 R(sub E) to -30 R(sub E). A pre-existing X-line moves tailward to beyond -50 R(sub E). Close to onset, a new X-line forms near -18 R(sub E) in the midnight sector. Earthward flows emanating from this X-line dipolarize the near-Earth field, leading to a reduction of the cross-tail current in the midnight sector, but not elsewhere. The magnetic shear between the dipolarized field near midnight and the stretched field elsewhere is equivalent to currents flowing through the ionosphere in a region I sense, and so forming the current wedge. Later in the expansion phase, the dipolarization spreads in local time at a rate of about 0.3 hours MLT per minute. A strong electric field and a rapid increase of the plasma pressure is associated with the dipolarization. Near midnight the dipolarization appears to occur at all distances between 6.6 and 13 R(sub E) at the same time within the resolution (+/- 2 min) of our model. However, the model results indicate that dipolarization starts before ground onset in the pre-midnight sector and propagates both earthward and eastward.THus, dipolarization may be much more complex than simple earthward/tailward and/or azimuthal expansion.

Raeder, J.↗

Connectivity, Pathology, and ApoE4 Interactions Predict Longitudinal Tau Spatial Progression and Memory

ABSTRACT Tau pathology spread into neocortex indicates a transition from healthy aging to Alzheimer's disease (AD). Connectivity between tau epicenters and later accumulating regions of cortex has been proposed as a mechanism of tau spread, but how this relationship changes with greater AD pathology burden or genotype is not understood. We investigated tau accumulation in two key regions, precuneus and inferior temporal cortex, using resting state functional connectivity (rsFC) and longitudinal PET imaging from a multicohort sample of cognitively unimpaired older adults. We examined how baseline tau PET, Aβ PET, and ApoE4 genotype status interact with rsFC between hippocampus and these downstream regions to predict rate of tau accumulation in neocortex. We found that the 3‐way interaction between connectivity, baseline tau, and baseline Aβ or ApoE4 status was associated with neocortical tau accumulation in precuneus and inferior temporal cortex. In addition, baseline tau, Aβ, and ApoE4 status also moderated the association between connectivity and rate of memory decline. Together, these results suggest that the extent and distribution of future tau accumulation may be predicted by the interaction of baseline connectivity, AD pathology, and genetic risk.

Neurosciences & Neurology↗

Trap-Assisted Dopant Compensation Prevents Shunting in poly-Si Passivating Interdigitated Back Contact Silicon Solar Cells

Interdigitated back contact (IBC) solar cells achieve the highest efficiencies of single-junction architectures, but complicated patterning of the rear fingers and spreading of dopants during processing inhibit their mainstream adoption due to concerns of shunting between the IBC fingers. One method of simplifying patterning at the rear is by using contact masks combined with plasma-enhanced chemical vapor deposition (PECVD) or ion implantation. However, the intrinsic isolation region becomes contaminated during high-temperature annealing by lateral diffusion of dopants and during masked PECVD by spreading of dopant radicals through region between the mask and the substrate. Despite this contamination, we show through scanning spreading resistance microscopy and Kelvin probe force microscopy that a ~20 µm wide compensating region exists with high enough resistivity to prevent shunting. We model this p-i-n poly-Si system using two simulation models: a simple resistor model considering only the capture of charge carriers by trap defects in poly-Si to reduce the conductivity, and a more refined 1-dimensional finite element model using Poisson’s equation, drift-diffusion equations, and recombination of carriers. Using this model, we show that high defect density significantly decreases the current across the region between the p- and n-type fingers, preventing shunting.

atom probe↗

MTF and point-spread function for a large-area CCD imager

The MTF degradation due to lateral diffusion is calculated for a back illuminated CCD imager for typical device parameters. The discrete nature of the CCD and finite size of the photosensitive elements result in an additional MTF degradation. The Fourier transform approach is utilized to calculate the effective point spread function for these processes in the time domain. Experimental data are presented on the point spread function for a three phase, double level anodized aluminum 160 x 100 thinned and back illuminated CCD imager and compared with the theoretical results. A simple modification of the Crowell and Labuda model suggested by these results is presented.

Ando, K. J.↗

Terrain-Influenced Winds and Fire-Fire Interactions in Wildland Fire Simulations [Dissertation]

Ensemble-based approaches to prescribed fire planning cannot be supported by computational fluid dynamics based models like FIRETEC and the Wildland-Urban Interface Fire Dynamics Simulator (WFDS) because they are too computationally expensive and cannot leverage large eddy simulation approaches like CAWFE and WRF-SFIRE because they have too coarse of resolution. QUIC-Fire was developed to fill this gap but it cannot currently address complex terrain, that is typical for instance in the Western United States. This dissertation describes a variety of improvements made to QUIC-Fire and its various incorporated algorithms in an effort to make it a viable tool in simulating wildland and prescribed fires on terrain. The modifications made to QUIC-Fire are described in three chapters. The first chapter describes the extension of the diagnostic wind model QUIC-URB, the wind engine of QUIC-Fire, to a terrain-following coordinate system. The terraininfluenced winds it generates are analyzed and compared. In particular, this chapter presents the mathematical derivation of the wind solver leading to a linear system of equations that are solved through the successive over-relaxation method. The model is validated against a standard test used in previous works (the Askervein Hill) and against a new dataset from measurements in the Socorro Mountains, New Mexico. The terrain-following implementation captures the correct phenomenology for the isolated Askervein Hill, with a wind speed up at the top of the hill. The model agrees well with measurements on the upwind side of the peak, but overestimates speed-up on the downwind side of the hill. This is due to the inability of the model to generate flow separation and wake-eddy dynamics. On a common laptop, the divergence-free wind field is obtained in 6 s, making the solver appealing for coupled fire-atmosphere simulations. The Socorro Mountain is highly complex, with many cliff faces, peaks, and valleys. Although the model captures the magnitude and direction of inlet and outlet areas of the domain, it performs rather poorly in the valley region and in the regions near the steep cliffs. Hence, the model shows good agreement with data in areas of open sloped terrain but lacks in areas where flow separation and thermally driven effects may be present (neither effect is addressed in this work). In the second chapter the implementation of the terrain-following version of QUIC-URB into QUIC-Fire, and the necessary changes needed to include terrain are described. No changes to the underlying fire spread algorithm are made other than what is required to correctly account for the inclusion of terrain. Previously published FIRETEC results that use five different topographies that share the same centerline profile are compared to simulation results from the modified QUIC-Fire that use the same topographies and fuels. QUIC-Fire results show overall similar behaviors in terms of how the topographies affect fire shapes and trends in spread rates. Due to the terrain-following version of QUIC-URB being unable to generate flow separations at the crest of hills, fire spread rates in these regions across all topographies are over-predicted when compared to FIRETEC. Lateral fire growth shows similar trends with FIRETEC between topographies but does not capture the increase in spread due to a diagonal interface between grassland and forested fuel region of the domain. These results suggest that there are three algorithms within QUIC-Fire that could use improvement: how flame tilt angle is accounted for, the incorporation of non-local drag effects, and the inclusion of the wake-eddy parameterizations that are used in QUIC-URB. Lastly, the third chapter describes a modification to the initial guess used for the calculation of the QUIC-URB mass-conserved wind solution during fire simulations. The modification is aimed at improving fire-fire interactions in QUIC-Fire simulations. The modification consists of using the solution from the previous timestep as the starting point for the calculation of the solution for the next timestep. Fire-fire interactions is greatly improved by the change but a new source of error is introduced. Due to how plumes are modelled in QUIC-Fire the new solution contains errors where gaps in the plume structure are present. However, these errors are mostly limited to the upper atmosphere, where they do not affect fire behavior at the surface, and their magnitude isn’t significant enough to discount the amount of new fire phenomenology now captured in QUIC-Fire with the change.

58 GEOSCIENCES↗

The effect of terrain-influenced winds on fire spread in QUIC-Fire

Here in this manuscript, we describe the implementation of the terrain-following version of QUIC-URB into QUIC-Fire and a demonstration of the impacts of terrain-influenced winds on QUIC-Fire-simulated fire spread. No changes to the underlying QUIC-Fire fire spread algorithm were made other than what was required to correctly account for the inclusion of terrain. This paper summarizes simulations used to understand how the QUIC-URB terrain-influenced winds affect upslope fire behavior without additional changes to the QUIC-Fire fire spread algorithm. Previously published FIRETEC results are compared to simulation results from the modified QUIC-Fire (incorporating terrain-influenced winds) that use the same topographies and fuels. QUIC-Fire results showed overall similar behaviors in terms of how the topographies affected fire shapes and trends in spread rates. Due to the terrain-following version of QUIC-URB being unable to generate flow separations at the crest of hills, fire spread rates in these regions across all non-flat topographies were over-predicted when compared to FIRETEC. Lateral fire growth showed similar trends with FIRETEC between topographies but did not capture the increase in spread due to a diagonal interface between grassland and forested fuel regions in the test domain. These simulations suggest possible refinements that are necessary to improve QUIC-Fire and thus guide ongoing efforts related to: how flame tilt angle is accounted for, the incorporation of non-local drag effects, and the inclusion of the wake-eddy parameterizations that are used in QUIC-URB.

54 ENVIRONMENTAL SCIENCES↗

Characterization of Mesoscale Convective Systems by Means of Composite Radar Reflectivity Data

A mesoscale convective system (MCS) is broadly defined as a cloud and precipitation system of mesoscale dimensions (often too large for most aircraft to circumnavigate) with deep-convective activity concentrated in at least part of the MCS, or present during part of its evolution. A large areal fraction of MCSs is stratiform in nature, yet estimates from MCSs over the Great Plains, the Southeast, and tropical waters indicate that at least half of the precipitation is of convective origin. The presence of localized convection is important, because within convective towers cloud particles and hydrometeors are carried upward towards the cloud top. Ice crystals then move over more stratiform regions, either laterally, or through in situ settling over decaying and spreading convection. These ice crystals then grow to precipitation-size particles in mid- to upper tropospheric mesoscale updrafts. The convective portion of a MCS is often a more or less continuous line of thunderstorms, and may be either short-lived or long-lived. Geerts (1997) presents a preliminary climatology of MCSs in the southeastern USA, using just one year of composite digital radar reflectivity data. In this study MCSs are identified and characterized by means of visual inspection of animated images. A total of 398 MCSs were identified. In the warm season MCSs were found to be about twice as frequent as in the cold season. The average lifetime and maximum length of MCSs are 9 hours, and 350 km, respectively, but some MCSs are much larger and more persistent. In the summer months small and short-lived MCSs are relatively more common, whereas in winter larger and longer-lived systems occur more frequently. MCSs occur more commonly in the afternoon, in phase with thunderstorm activity, but the amplitude of the diurnal cycle is small compared to that of observed thunderstorms. It is estimated that in the Southeast more than half of all precipitation and severe weather results from MCSs.

Geerts, Bart↗

Analyzing and Predicting Effort Associated with Finding and Fixing Software Faults

Context: Software developers spend a significant amount of time fixing faults. However, not many papers have addressed the actual effort needed to fix software faults. Objective: The objective of this paper is twofold: (1) analysis of the effort needed to fix software faults and how it was affected by several factors and (2) prediction of the level of fix implementation effort based on the information provided in software change requests. Method: The work is based on data related to 1200 failures, extracted from the change tracking system of a large NASA mission. The analysis includes descriptive and inferential statistics. Predictions are made using three supervised machine learning algorithms and three sampling techniques aimed at addressing the imbalanced data problem. Results: Our results show that (1) 83% of the total fix implementation effort was associated with only 20% of failures. (2) Both safety critical failures and post-release failures required three times more effort to fix compared to non-critical and pre-release counterparts, respectively. (3) Failures with fixes spread across multiple components or across multiple types of software artifacts required more effort. The spread across artifacts was more costly than spread across components. (4) Surprisingly, some types of faults associated with later life-cycle activities did not require significant effort. (5) The level of fix implementation effort was predicted with 73% overall accuracy using the original, imbalanced data. Using oversampling techniques improved the overall accuracy up to 77%. More importantly, oversampling significantly improved the prediction of the high level effort, from 31% to around 85%. Conclusions: This paper shows the importance of tying software failures to changes made to fix all associated faults, in one or more software components and/or in one or more software artifacts, and the benefit of studying how the spread of faults and other factors affect the fix implementation effort.

software fix implementation effort↗

Seismicity and the subduction process

There is considerable variation between subduction zones in the largest characteristic earthquake within each zone. Assuming that coupling between downgoing and upper plates is directly related to characteristic earthquake size, tests for correlations between variation in coupling and other physical features of subduction zones are conducted: the lateral extent and penetration depth of Benioff zones, age of subducting lithosphere, convergence rate, and back-arc spreading. Using linear multivariate regression, coupling is correlated with two variables: convergence rate and lithosphere age. Secondary correlations within the data set are penetration depth versus lithosphere age, and lateral extent versus convergence rate. Taken together, the observed correlations suggest a simple qualitative model where convergence rate and lithosphere age determine the horizontal and sinking rates, respectively, of slabs: these parameters influence the seismic coupling in the subduction zone. In the limit of a fast sinking rate and slow convergence rate, back-arc spreading occurs and thereby appears to be a passive process.

Ruff, L.↗

Measurement of auroral rays from the space shuttle

Videotapes of auroras from two space shuttle missions were analyzed to determine the locations of auroral rays. One hundred and forty auroral ray locations were determined by triangulating from pairs of images taken several seconds (20-100 km) apart. The rays, observed over a range of 18 hours in local magnetic time between 62 deg and 85 deg magnetic latitude, were mostly confined to the Feldstein oval in the evening and midnight sectors but were uniformly scattered well into the polar cap in the morning sector. Plots of ray border altitude versus magnetic time show a steady increase in lower border altitude, suggesting a decrease in energy from near 10 keV in the early evening to near 2 keV by midmorning. This variation for the energy in discrete rayed arcs is opposite to previous reports for the average energy of auroral electrons and suggests that the acceleration mechanism within discrete arcs differs from that pertaining to the auroral oval in general. Comparison of upper and lower border altitudes suggests a nearly monoenergetic electron flux shortly before midnight and a more extended distribution at both earlier and later times. The apparently independent variation in maximum energy and energy spread is difficult to reconcile with models involving acceleration of auroral electrons by parallel electric fields. There was only a slight dependence of border altitudes on magnetic latitude within the auroral oval, while rays in the polar cap (northward B(sub z)) were significantly higher.

Jack, Todd M.↗