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All sourcesNASA NTRSDOE OSTI
NASA NTRS2021

Application of Whole Genome Sequencing and MALDI-TOF to the Identifcation of Bacillus Species Isolated from Cleanrooms at NASA Johnson Space Center

Astromaterial cleanrooms at NASA Johnson Space Center are built environments that hold samples, such as lunar rocks, from different space exploration missions. Bacillus sp. are frequently detected in routine microbial monitoring of these facilities. Since this, and related genera, can form endospores that can withstand harsh conditions, they could contaminate astromaterials. This could confound searches for extraterrestrial life. Whole genome sequencing (WGS) is widely used for identifying bacterial strains and tracking their source; however, WGS is expensive and time consuming. Matrix-assisted laser desorption ionization– time of flight mass spectrometry (MALDI-TOF) shows promise as a low-cost, rapid method of identifying strains of bacteria, but few studies have compared this proteomics method to WGS. To evaluate a high throughput method of tracking the source of contamination of this built environment, WGS and MALDI-TOF was conducted on 18 bacterial strains isolated from surfaces in astromaterials cleanrooms. WGS identified 14 Bacillus, 2 Paenibacillus, 1 Solibacillus and 1 Alcaligenes strains. These isolates showed similarity to strains commonly observed in spacecraft assembly cleanrooms at other facilities. Cluster analysis of mass spectra generated by MALDI-TOF grouped strains together that were greater than 94% similar to each other in terms of amino acid sequences of single copy core genes, as assessed by WGS. This suggests that MALDI-TOF and WGS results are consistent with each other and MALDI-TOF can rapidly identify strains of Bacillus sp. isolated from cleanroom environments with a resolution comparable to WGS. Based on phylogenomic analysis, these results also suggest the presence of a cosmopolitan class of Bacillus sp. that are more likely to be found in cleanrooms and similar built environments than in natural systems.

Farnaz Mazhari↗
NASA NTRS1992

Gravity and count probabilities in an expanding universe

The time evolution of nonlinear clustering on large scales in cold dark matter, hot dark matter, and white noise models of the universe is investigated using N-body simulations performed with a tree code. Count probabilities in cubic cells are determined as functions of the cell size and the clustering state (redshift), and comparisons are made with various theoretical models. We isolate the features that appear to be the result of gravitational instability, those that depend on the initial conditions, and those that are likely a consequence of numerical limitations. More specifically, we study the development of skewness, kurtosis, and the fifth moment in relation to variance, the dependence of the void probability on time as well as on sparseness of sampling, and the overall shape of the count probability distribution. Implications of our results for theoretical and observational studies are discussed.

Bouchet, Francois R.↗
NASA NTRS1993

A study of the threshold method utilizing raingage data

The threshold method for estimation of area-average rain rate relies on determination of the fractional area where rain rate exceeds a preset level of intensity. Previous studies have shown that the optimal threshold level depends on the climatological rain-rate distribution (RRD). It has also been noted, however, that the climatological RRD may be composed of an aggregate of distributions, one for each of several distinctly different synoptic conditions, each having its own optimal threshold. In this study, the impact of RRD variations on the threshold method is shown in an analysis of 1-min rainrate data from a network of tipping-bucket gauges in Darwin, Australia. Data are analyzed for two distinct regimes: the premonsoon environment, having isolated intense thunderstorms, and the active monsoon rains, having organized convective cell clusters that generate large areas of stratiform rain. It is found that a threshold of 10 mm/h results in the same threshold coefficient for both regimes, suggesting an alternative definition of optimal threshold as that which is least sensitive to distribution variations. The observed behavior of the threshold coefficient is well simulated by assumption of lognormal distributions with different scale parameters and same shape parameters.

Short, David A.↗
NASA NTRS1991

Laboratory studies of the newly discovered infrared band at 4705.2 cm-1 (2.1253 micrometers) in the spectrum of Io: the tentative identification of CO2

We discuss over 120 laboratory experiments pertaining to the identification of the new absorption band discovered by Trafton et al. (1991) at 4705.2 cm-1 (2.1253 micrometers) in the spectrum of Io. It is shown that this band is not due to overtones or combinations of the fundamental bands associated with the molecules (or their chemical complexes) already identified on Io, namely, SO2, H2S, and H2O. Thus, this band is due to a new, previously unidentified, component of Io. Experiments also demonstrate that the band is not due to molecular H2 frozen in SO2 frosts. Since the frequency of this band is very close to the first overtone of the nu 3 asymmetric stretching mode of CO2, we have investigated the spectral behavior of CO2 under a variety of conditions appropriate for Io. The profile of the Io band is not consistent with the rotational envelope expected for single, freely rotating, gaseous CO2 under Io-like conditions. It was found that pure, solid CO2 and CO2 intimately mixed in a matrix of solid SO2 and H2S produce bands with similar widths (5-10 cm-1), but that these bands consistently fall at frequencies about 10-20 cm-1 (approximately 0.007 micrometer) lower than the Io band. CO2 in SO2 : H2S ices also produces several additional bands that are not in the Io spectra. The spectral fit improves, however, as the CO2 concentration in SO2 increases, suggesting that CO2-CO2 interactions might be involved. A series of Ar : CO2 and Kr : CO2 matrix isolation experiments, as well as laboratory work done elsewhere, show that CO2 clustering shifts the band position to higher frequencies and provides a better fit to the Io band. Various laboratory experiments have shown that gaseous CO2 molecules have a propensity to cluster between 80 and 100 K, temperatures similar to those found on the colder regions of Io. We thus tentatively identify the newly discovered Io band at 4705.2 cm-1 (2.1253 micrometers) with CO2 multimers or "clusters" on Io. Whether these clusters are buried within an SO2 frost, reside on the surface, or are in a residual, steady-state "atmospheric aerosol" population over local coldtraps is not entirely clear, although we presently favor the latter possibility. The size of these clusters is not well defined, but evidence suggests groups of more than four molecules are required. The absorption strength of the 2 nu 3 CO2 cluster overtone determined in the laboratory, in conjunction with the observed strength of the Io band, suggests that the disk-integrated abundance of CO2 is less than 1% that of the SO2. Studies of the sublimation behavior of CO2 indicate that it probably resides predominantly in the cooler areas (< 100 K) of Io. The relative constancy of the Io feature over a variety of orbital phases suggests that the polar regions may contain much of the material. Some consequences of the physical properties of CO2 under conditions pertinent to Io are discussed. The presence of CO2 clusters on Io could be verified by the detection of any one of several other infrared bands associated with the CO2 molecule, of which the strongest are the nu 3 12CO2 asymmetric stretch fundamental near 2350 cm-1 (4.25 micrometers) and the nu 2 bending mode fundamental near 660 cm-1 (15.1 micrometers). Weaker bands that may also be detectable include the nu 3 13CO2 asymmetric stretch fundamental near 2280 cm-1 (4.39 micrometers), the 2 nu 2 + nu 3 combination/overtone band near 3600 cm-1 (2.78 micrometers), and the nu 1 + nu 3 combination band near 3705 cm-1 (2.70 micrometers).

NASA Center ARC↗
NASA NTRS2008

Novel Species of Non-Spore-Forming Bacteria

While cataloging cultivatable microbes from the airborne biological diversity of the atmosphere of the Regenerative Enclosed life-support Module Simulator (REMS) system at Marshall Space Flight Center, two strains that belong to one novel bacterial species were isolated. Based on 16S rRNA gene sequencing and the unique morphology and the taxonomic characteristics of these strains, it is shown that they belong to the family Intrasporangiaceae, related to the genus Tetrasphaera, with phylogenetic distances from any validly described species of the genus Tetrasphaera ranging from 96.71 to 97.76 percent. The fatty acid profile supported the affiliation of these novel strains to the genus Tetrasphaera except for the presence of higher concentrations of octadecenoic acid (C18:0) and cis-9-octadecenoic acid (C18:1), which discriminates these strains from other valid species. In addition, DNA-DNA hybridization studies indicate that these strains belong to a novel species that could be readily distinguished from its nearest neighbor, Tetrasphaera japonica AMC 5116T, with less than 20 percent DNA relatedness. Physiological and biochemical tests show few phenotypic dissimilarities, but genotypic analysis allowed the differentiation of these gelatin-liquefying strains from previously reported strains. The name Tetrasphaera remsis sp. Nov. is proposed with the type strain 3-M5-R-4(sup T) (=ATCC BAA-1496(sup T)=CIP 109413(sup T). The cells are Gram-positive, nonmotile, cocci, in tetrad arrangement and clusters. Spore formation is not observed. No species of Tetrashpaera has ever been isolated from airborne samples. Previous discoveries have come from soil and activated sludge samples. As other species of this genus have demonstrated enhanced biological phosphorus removal activity, further tests are required to determine if this newly discovered species would have bioremediation applications.

Briegel, Ariane↗
NASA NTRS2006

A Search for X-ray Emission in Isolated Compact Triplets

We describe preliminary results of an exploratory search for diffuse X-ray emission in a sample of the poorest galaxy groups, i.e., isolated compact triplets of galaxies. These systems represent the simplest forms of galaxy clustering while manifesting all the complexities inherent in other groups. We have selected 20 compact triplets for this initial study. The component galaxies are expected to interact with each other and with the group's intergalactic medium, if present, in complex ways that trigger high-energy processes.

Brown, Beth A.↗
NASA NTRS2016

DiskDetective.org: Finding Homes for Exoplanets Through Citizen Science

The Disk Detective project is scouring the data archive from the WISE all-sky survey to find new debris disks and protoplanetary disks-the dusty dens where exoplanets form and dwell. Volunteers on this citizen science website have already performed 1.6 million classifications, searching a catalog 8x the size of any published WISE survey. We follow up candidates using ground based telescopes in California, Arizona, Chile, Hawaii, and Argentina. We ultimately expect to increase the pool of known debris disks by approx. 400 and triple the solid angle in clusters of young stars examined with WISE, providing a unique new catalog of isolated disk stars, key planet-search targets, and candidate advanced extraterrestrial civilizations. Come to this talk to hear the news about our latest dusty discoveries and the trials and the ecstasy of launching a new citizen science project. Please bring your laptop or smartphone if you like!

debris disks↗
NASA NTRSDate not supplied

Using Secondary Craters to Assess Strength Differences Between Neighboring Surface Units

Introduction: An issue with Martian remote sensing studies is the difficulty directly inferring surface and crustal material properties. For direct measurements we currently rely on the instruments of landed missions, like InSight. However, these are limited to specific locations (i.e., Elysium Planitia for InSight). To understand how results from in situ missions apply to other parts of Mars’ crust, we would like to apply a methodology that uses remote sensing. We are exploring using secondary craters, which are often thought of as nuisances when finding accurate relative ages, to get at these properties. An upside of secondary craters is that they form by ejecta blocks moving at relatively slow speeds (compared to primary impacts), which lets them reside in a different crater scaling regime [1], one that is more sensitive to the crust’s effective strength (Yeff) and its porosity. Secondary Crater Scaling: There are multiple parameters that influence the size of secondary craters, but we can measure craters in ways that isolate the dependence of crater size to just Yeff. We focus on secondary clusters that have impacted into distinct but bordering geological units. These secondaries can be used to determine Yeff thanks to one important fact: all the secondaries in this cluster are from the same distant primary, and as a result, the ejecta velocity, median block sizes, and densities are expected to be the same (at least to first order). Thus, variations between crater size on the two units are due to material property differences (i.e. Yeff). Thanks to the steep size frequency distributions (SFD) of secondaries [2], observable secondary crater sizes are tightly clustered, and we can simply use differences in median secondary sizes between two geologic units to constrain the ratio of Yeff. We are also able to use the SFD of our counting areas to check if our counted craters are secondaries (i.e. have a steep distribution), and if the two crater counting areas are from the same source (and thus have the same power law slope), but are offset from each other at around the same factor as the median difference.

Mars; Craters; Crustal Strength↗
NASA NTRS1977

HP-9825A calculator programs for plotting orbiter RCS jet dynamic pressure contours

Computer programs which generate displays of the dynamic pressure fields generated by orbiter RCS thruster firings are described. The programs can be used to generate dynamic contours for an isolated RCS jet and to superimpose the plume contours for specific jets or jet clusters on front and side views of the orbiter profile.

Wilson, S. W.↗
NASA NTRS2001

Neuronal RNA granules: a link between RNA localization and stimulation-dependent translation

RNA granules are a macromolecular structure observed in neurons, where they serve as motile units that translocate mRNAs. Isolated RNA granules are highly enriched in Staufen protein and ultrastructurally contain densely packed clusters of ribosomes. With depolarization, many mRNAs, including those involved in plasticity, rapidly shift from the RNA granule fraction to polysomes. Depolarization reorganizes granules and induces a less compact organization of their ribosomes. RNA granules are not translationally competent, as indicated by the failure to incorporate radioactive amino acids and the absence of eIF4E, 4G, and tRNAs. We concluded that RNA granules are a local storage compartment for mRNAs under translational arrest but are poised for release to actively translated pools. Local release of mRNAs and ribosomes from granules may serve as a macromolecular mechanism linking RNA localization to translation and synaptic plasticity.

NASA Discipline Neuroscience↗
NASA NTRS1979

The monopropellant hydrazine propulsion subsystem for the Pioneer Venus spacecraft

The Pioneer Venus Orbiter and the Multiprobe spacecraft propulsion subsystems and their performance are presented. Monopropellant hydrazine subsystems on each spacecraft provided the capability to spin up the spacecraft after separation and perform all spin rate, velocity, and attitude changes required by the control subsystem to satisfy mission objectives. The propulsion subsystem provides thrust on demand by supplying anhydrous hydrazine from the propellant tanks through manifolds, filters and valves to the thrust chamber assemblies where the hydrazine is catalytically decomposed and expanded in a conical nozzle. The subsystems consist of seven 1 lbf thrusters for the Orbiter and six 1 lbf thrusters for the multiprobe which are isolated by two latch valves from the two propellant tanks so that two redundant thruster clusters are provided to ensure mission completion in the event of a single point failure. The propellant feed system is of all-welded construction to minimize weight and leakage and titanium is used as the primary material of construction. The multiprobe burned up on entering the Venus atmosphere with enough propellant left for the mission and the Orbiter was inserted into Venus orbit with enough propellant remaining for more than 2 earth years of orbital operations.

Barker, F. C.↗
NASA NTRS2003

The Petrography of Meteoritic Nano-Diamonds

At least some meteoritic nanodiamonds are likely of presolar origin because of their association with anomalous Xe-HL and Te isotopic components indicative of a supernova (SN) origin. But the abundance of Xe is such that only approx. 1 in 10(exp 6) nano-diamonds contains a Xe atom, and the bulk C-13/C-12 composition of nano-diamond acid residues is chondritic (solar). Therefore, it is possible that a significant fraction of meteoritic nano-diamonds formed within the solar nebula. Nano-diamonds have recently been detected for the first time within the accretion discs of young stars by the Infrared Space Observatory (ISO). No comparable evidence of nanodiamonds in the interstellar medium has yet been found. We have identified nano-diamonds in acid etched thin-sections of meteorites, polar micrometeorites, and interplanetary dust particles (IDPs) with the goal of determining their distribution as a function of heliocentric distance. (It is assumed the meteorites and the polar micrometeorites are from asteroids at 2-4 AU and at least some of the IDPs are from comets at >50AU). We found that nano-diamonds are heterogeneously distributed throughout carbon-rich meteoritic materials (we identified them in some IDPs and not in others), and that their abundance may actually decrease with heliocentric distance, consistent with the hypothesis that some of them formed within the inner solar system and not in a presolar (SN) environment. In order to gain further insight about the origins of meteoritic nano-diamonds we are currently investigating their distribution in unetched thin-sections. We have examined a chondritic cluster IDP (U220GCA), fragments of the Tagish Lake (CM1) meteorite, and a SN graphite spherule (KE3d8) isolated from the Murchison (CM) meteorite. We selected U220GCA because its nano-diamond abundance (in acid etched thin-sections) appears to be as much as approx. 10X higher than in Murchison matrix, Tagish Lake because it has a higher reported nano-diamond abundance than other carbonaceous chondrites (approx. 3650-4330 ppm), and KE3d8 because it is a carbon spherule with an isotopic composition suggesting that it is a bone fide presolar SN grain.

Dai, Z. R.↗
NASA NTRSDate not supplied

Automated Tracking of Shallow Cu Growth Rates on Geostationary Imagery and Linkages to Cloud Organization

Shallow moist convection is ubiquitous throughout the tropics and represents a key player in boundary layer processes. Common tropical cloud features, such as convective rolls and cold pool fronts, form and persist for different periods within environments that support such development. Determining differences in lifecycle amongst these features in varying environments requires viewing their evolution from initiation to decay. Geostationary satellites provide a means to follow the clouds with enhanced spatiotemporal sampling from space. We apply a cloud-tracking tool to study lifecycle properties of shallow cumulus sampled during the NASA Cloud, Aerosol, and Monsoon Processes Philippines Experiment (CAMP2Ex) field campaign of 2019. The mission conducted airborne and shipborne operations over the West Pacific Ocean, in tandem with Rapid Scan imagery from the Advanced Himawari Imager (AHI) on the Japan Meteorological Agency’s (JMA) Himawari-8 satellite. Shallow cumulus was segmented on AHI 0.5-km visible reflectance and tracked during the daylit hours of several research flights that exhibited ideal atmospheric conditions for tracking. The resulting cloud tracks were collected according to regions containing airborne sampling of individual clouds at various stages of their lifecycles, yielding ensembles of tracks in separate environments. We present an analysis on lifecycle properties extracted from the cloud-track ensembles and their potential connections to cloud organizations observed throughout CAMP2Ex. Each ensemble is evaluated by calculating cloud-layer growth rates and comparing to spatial parameters, including track-achieved area and cloud-top height. The apparent clustering of growth rates for specific ensembles is then compared against overall cloud organizations, such as isolated congestus and cold pool fronts, that are observed with the airborne data. Finally, we consider how such differences in cloud growth appear in the airborne radar observations of intercepted cloud tracks.

Cloud Tracking↗
NASA NTRS1994

Internal velocity and mass distributions in simulated clusters of galaxies for a variety of cosmogonic models

The mass and velocity distributions in the outskirts (0.5-3.0/h Mpc) of simulated clusters of galaxies are examined for a suite of cosmogonic models (two Omega(sub 0) = 1 and two Omega(sub 0) = 0.2 models) utilizing large-scale particle-mesh (PM) simulations. Through a series of model computations, designed to isolate the different effects, we find that both Omega(sub 0) and P(sub k) (lambda less than or = 16/h Mpc) are important to the mass distributions in clusters of galaxies. There is a correlation between power, P(sub k), and density profiles of massive clusters; more power tends to point to the direction of a stronger correlation between alpha and M(r less than 1.5/h Mpc); i.e., massive clusters being relatively extended and small mass clusters being relatively concentrated. A lower Omega(sub 0) universe tends to produce relatively concentrated massive clusters and relatively extended small mass clusters compared to their counterparts in a higher Omega(sub 0) model with the same power. Models with little (initial) small-scale power, such as the hot dark matter (HDM) model, produce more extended mass distributions than the isothermal distribution for most of the mass clusters. But the cold dark matter (CDM) models show mass distributions of most of the clusters more concentrated than the isothermal distribution. X-ray and gravitational lensing observations are beginning providing useful information on the mass distribution in and around clusters; some interesting constraints on Omega(sub 0) and/or the (initial) power of the density fluctuations on scales lambda less than or = 16/h Mpc (where linear extrapolation is invalid) can be obtained when larger observational data sets, such as the Sloan Digital Sky Survey, become available.

Cen, Renyue↗
NASA NTRS1996

Adaptive grid methods for RLV environment assessment and nozzle analysis

Rapid access to highly accurate data about complex configurations is needed for multi-disciplinary optimization and design. In order to efficiently meet these requirements a closer coupling between the analysis algorithms and the discretization process is needed. In some cases, such as free surface, temporally varying geometries, and fluid structure interaction, the need is unavoidable. In other cases the need is to rapidly generate and modify high quality grids. Techniques such as unstructured and/or solution-adaptive methods can be used to speed the grid generation process and to automatically cluster mesh points in regions of interest. Global features of the flow can be significantly affected by isolated regions of inadequately resolved flow. These regions may not exhibit high gradients and can be difficult to detect. Thus excessive resolution in certain regions does not necessarily increase the accuracy of the overall solution. Several approaches have been employed for both structured and unstructured grid adaption. The most widely used involve grid point redistribution, local grid point enrichment/derefinement or local modification of the actual flow solver. However, the success of any one of these methods ultimately depends on the feature detection algorithm used to determine solution domain regions which require a fine mesh for their accurate representation. Typically, weight functions are constructed to mimic the local truncation error and may require substantial user input. Most problems of engineering interest involve multi-block grids and widely disparate length scales. Hence, it is desirable that the adaptive grid feature detection algorithm be developed to recognize flow structures of different type as well as differing intensity, and adequately address scaling and normalization across blocks. These weight functions can then be used to construct blending functions for algebraic redistribution, interpolation functions for unstructured grid generation, forcing functions to attract/repel points in an elliptic system, or to trigger local refinement, based upon application of an equidistribution principle. The popularity of solution-adaptive techniques is growing in tandem with unstructured methods. The difficultly of precisely controlling mesh densities and orientations with current unstructured grid generation systems has driven the use of solution-adaptive meshing. Use of derivatives of density or pressure are widely used for construction of such weight functions, and have been proven very successful for inviscid flows with shocks. However, less success has been realized for flowfields with viscous layers, vortices or shocks of disparate strength. It is difficult to maintain the appropriate mesh point spacing in the various regions which require a fine spacing for adequate resolution. Mesh points often migrate from important regions due to refinement of dominant features. An example of this is the well know tendency of adaptive methods to increase the resolution of shocks in the flowfield around airfoils, but in the incorrect location due to inadequate resolution of the stagnation region. This problem has been the motivation for this research.

Thornburg, Hugh J.↗
NASA NTRS2008

Formation of Clustered DNA Damage after High-LET Irradiation: A Review

Radiation can cause as well as cure cancer. The risk of developing radiation-induced cancer has traditionally been estimated from cancer incidence among survivors of the atomic bombs in Hiroshima and Nagasaki. These data provide the best estimate of human cancer risk over the dose range for low linear energy transfer (LET) radiations, such as X- or gamma-rays. The situation of estimating the real biological effects becomes even more difficult in the case of high LET particles encountered in space or as the result of domestic exposure to particles from radon gas emitters or other radioactive emitters like uranium-238. Complex DNA damage, i.e., the signature of high-LET radiations comprises by closely spaced DNA lesions forming a cluster of DNA damage. The two basic groups of complex DNA damage are double strand breaks (DSBs) and non-DSB oxidative clustered DNA lesions (OCDL). Theoretical analysis and experimental evidence suggest there is increased complexity and severity of complex DNA damage with increasing LET (linear energy transfer) and a high mutagenic or carcinogenic potential. Data available on the formation of clustered DNA damage (DSBs and OCDL) by high-LET radiations are often controversial suggesting a variable response to dose and type of radiation. The chemical nature and cellular repair mechanisms of complex DNA damage have been much less characterized than those of isolated DNA lesions like an oxidized base or a single strand break especially in the case of high-LET radiation. This review will focus on the induction of clustered DNA damage by high-LET radiations presenting the earlier and recent relative data.

Hada, Megumi↗
NASA NTRS1991

The small-scale clustering properties of dwarf galaxies

Two results on the small-scale clustering properties of dwarf galaxies are reported, which were identified in the vicinity of early-type Shapley-Ames galaxies on high-resolution photographic plates. The first result indicates that dwarf galaxies display the same trend of stronger clustering toward earlier morphological type on small scales as their giant counterparts on larger scales. It is suggested that early-type dwarfs can be used as dynamical probes of dark halos around early-type giant galaxies and as tracers of the dynamical evolution of such halos in dense environments. The second result pertains to the trend of increasing early-type dwarf frequency per early-type giant with environment richness previously established for rich groups. It is found that a minimum value of isolated early-type galaxies is approximately 0.25, as compared to a maximum of approximately 8 in rich environments like the Virgo Cluster.

Vader, J. P.↗