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BOREAS TE-22 Allometric Forest Survey Data

The Boreal Ecosystem-Atmospheric Study (BOREAS) TE-22 (Terrestrial Ecology) team collected data sets in support of its efforts to characterize and interpret information on the forest structure of boreal vegetation in the Southern and Northern Study Areas (SSA and NSA) during the 1994 growing season. The data are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Shugart, H. H.

Interagency Collaborators Develop and Implement ForWarn, a National, Near Real Time Forest Monitoring Tool

ForWarn is a satellite-based forest monitoring tool that is being used to detect and monitor disturbances to forest conditions and forest health. It has been developed through the synergistic efforts, capabilities and contributions of four federal agencies, including the US Forest Service Eastern Forest and Western Wildland Environmental Threat Assessment Centers, NASA Stennis Space Center (SSC), Department of Energy's (DOE) Oak Ridge National Laboratory (ORNL) and US Geological Survey Earth (USGS) Earth Research Observation System (EROS), as well as university partners, including the University of North Carolina Asheville's National Environmental Modeling and Analysis Center (NEMAC). This multi-organizational partnership is key in producing a unique, path finding near real-time forest monitoring system that is now used by many federal, state and local government end-users. Such a system could not have been produced so effectively by any of these groups on their own. The forests of the United States provide many societal values and benefits, ranging from ecological, economic, cultural, to recreational. Therefore, providing a reliable and dependable forest and other wildland monitoring system is important to ensure the continued health, productivity, sustainability and prudent use of our Nation's forests and forest resources. ForWarn does this by producing current health indicator maps of our nation's forests based on satellite data from NASA's MODIS (Moderate Resolution Imaging Spectroradiometer) sensors. Such a capability can provide noteworthy value, cost savings and significant impact at state and local government levels because at those levels of government, once disturbances are evident and cause negative impacts, a response must be carried out. The observations that a monitoring system like ForWarn provide, can also contribute to a much broader-scale understanding of vegetation disturbances.

Underwood, Lauren

AmeriFlux FLUXNET-1F US-xWR NEON Wind River Experimental Forest (WREF)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-xWR NEON Wind River Experimental Forest (WREF). This is the FLUXNET version of the carbon flux data for the site US-xWR NEON Wind River Experimental Forest (WREF) produced by applying the standard ONEFlux (1F) software. Site Description - Located in an old growth Pacific Northwest forest west of the Cascade Range, Wind River Experimental Forest has a rich history of research and timber management since the early 1900s. The area is best known for its old-growth forests of Douglas-fir and western hemlock. Data collected at this site provides an interesting comparison to NEON’s ABBY site which is located Yacolt Burn State Forest, a relatively young growth industrial timber production forest.

Network), NEON (National Ecological Observatory [N

Carbon Monitoring and Above Ground Biomass Trends: Anchor Forest Opportunities for Tribal, Private and Federal Relationships

There are more than 300 million hectares of forested land whithin the conterminious United States essential to sustaining the myriad social/cultural, economic, and ecologic benefits society enjoys from these lands. Nationwide, millions of forested hectares, both private and public, are disappearing functionally and physically throguh serve wildfire fire and land coversion. On many of these lands, management, centered on fire supression, has led to reductions in forest resilience to wildfire. Lands, overstocked with accumulated fuel and faced with a changing climate, are expected to continue this legacy of fire and deteriorating health. A paradigm shift is needed to face the challenges confronting forests and enhance collaborative efforts across multiple foret ownerships. Our ability to leverage emerging technologies and pair them with the knowledge of indigenous peoples presents new opportunities for success. The objectives of this study were to 1) assess the Anchor Forest concept as a framework to leverage collaborative motivations and leadership by indigenous peoples (Tribes) in eastern Washington State to improve forest ecosystem health across legal and political boundaries, 'cross-boundary' management, and 2) demonstrate how the NASA carbon monitoring system (CMS) mapping of products of regional forestland above ground biomass (AGB) density and temporal trends can provide information that supports decisionmakers in their efforts to collaboratively approach improving forest health conditions through management activities.

Tribes; Anchor Forests; Forest Resilience; Collabo

Rocky Mountain Disasters - Using NASA Earth Observations to Monitor Post-Fire Vegetation Recovery in the Colorado Front Range

Forest composition and structure in the Colorado Front Range has been altered by changing wildfire regimes. In particular, increased moderate- and high-severity fire significantly reduces forest cover following fire and often results in reduced seedling regeneration. Reduced tree canopy regrowth has chronic effects on upland ecological function and downstream water quality. This project partnered with the US Forest Service to estimate long-term vegetation recovery following four Colorado Front Range fires between 1996 and 2002—the Bobcat, Buffalo Creek, Hayman, and High Meadows fires—using Landsat 5 Thematic Mapper (TM),Landsat 7 Enhanced Thematic Mapper (ETM+), and Landsat 8 Operational Land Imager (OLI). The random forest algorithm was applied to produce maps of percent forest canopy cover for coniferous trees, deciduous trees, and all trees using time-series variables for pre- and post-fire as inputs. Similarly, maps of post-fire seedling regeneration were produced using random forest for coniferous trees,deciduous trees, and all trees using ecological drivers (soil, climate, fire, and topography) and pre-fire remote sensing predictors. Relationships between ecological drivers of post-fire vegetation trajectories were also evaluated. Additional analyses were conducted to (1) assess whether seedlings could be detected by Landsat or synthetic aperture radar (SAR) time-series analysis (2) assess pre-fire and post-fire Landsat variables against pre-fire and post-fire tree cover estimates to evaluate whether magnitude of forest change can be detected. Understanding variables that influence vegetative recovery, vegetation type conversion, and watershed characteristics will aid forest restoration efforts and water quality management.

Eric Jensen

Quantifying Post-fire Vegetation Recovery on the Colorado Front Range

Forest composition and structure in the Colorado Front Range has been altered by changing wildfire regimes, particularly in response to increased fire severity. Subsequent reductions in post-fire tree regeneration can result in chronic impacts to ecological function and water quality. This project partnered with the U.S. Forest Service to estimate tree canopy recovery from 15 to 21 years after four Colorado Front Range fires that burned between 1996 and 2002— the Bobcat, Buffalo Creek, Hayman, and High Meadows fires—using Landsat 5 Thematic Mapper (TM), Landsat 7 Enhanced Thematic Mapper (ETM+), and Landsat 8 Operational Land Imager (OLI). First, we evaluated relationships between recovery metrics derived from spectral vegetation indices (i.e. post-fire vegetation, normalized burn ratio, percent unrecovered vegetation) and field-collected counts of post-fire tree seedling regeneration. Then, we used high-resolution imagery paired with Landsat timeseries spectral and geomorphometric data to map forest canopy cover 15-21 years post-fire. Finally, we assessed ecological drivers of recovery including topography, climate, soils, and fire severity using Random Forest. While we found that basic vegetation index metrics failed to distinguish field-measured tree regeneration, our data showed that both aspect and burn severity were important drivers of vegetation recovery. North-facing aspects tended to have higher pre-fire Normalized Difference Vegetation Index (NDVI) and thus higher burn severities. However, areas that burned at high severity experienced slower vegetation recovery, regardless of aspect suggesting that high severity fire can mute favorable site conditions on north-facing aspects (i.e. moister, more developed soils). While this work propels our understanding of variables that influence vegetative recovery, vegetation type, forest conversion, and watershed function, more work should focus on what vegetation indices identifying areas of recovery indicate across different forest types and burn severities.

NASA DEVELOP

Wildfire management decisions outweigh mechanical treatment as the keystone to forest landscape adaptation

Modern land management faces unprecedented uncertainty regarding future climates, novel disturbance regimes, and unanticipated ecological feedbacks. Mitigating this uncertainty requires a cohesive landscape management strategy that utilizes multiple methods to optimize benefits while hedging risks amidst uncertain futures. We used a process-based landscape simulation model (LANDIS-II) to forecast forest management, growth, climate effects, and future wildfire dynamics, and we distilled results using a decision support tool allowing us to examine tradeoffs between alternative management strategies. We developed plausible future management scenarios based on factorial combinations of restoration-oriented thinning prescriptions, prescribed fire, and wildland fire use. Results were assessed continuously for a 100-year simulation period, which provided a unique assessment of tradeoffs and benefits among seven primary topics representing social, ecological, and economic aspects of resilience. Projected climatic changes had a substantial impact on modeled wildfire activity. In the Wildfire Only scenario (no treatments, but including active wildfire and climate change), we observed an upwards inflection point in area burned around mid-century (2060) that had detrimental impacts on total landscape carbon storage. While simulated mechanical treatments (~ 3% area per year) reduced the incidence of high-severity fire, it did not eliminate this inflection completely. Scenarios involving wildland fire use resulted in greater reductions in high-severity fire and a more linear trend in cumulative area burned. Mechanical treatments were beneficial for subtopics under the economic topic given their positive financial return on investment, while wildland fire use scenarios were better for ecological subtopics, primarily due to a greater reduction in high-severity fire. Benefits among the social subtopics were mixed, reflecting the inevitability of tradeoffs in landscapes that we rely on for diverse and countervailing ecosystem services. This study provides evidence that optimal future scenarios will involve a mix of active and passive management strategies, allowing different management tactics to coexist within and among ownerships classes. Our results also emphasize the importance of wildfire management decisions as central to building more robust and resilient future landscapes.

54 ENVIRONMENTAL SCIENCES

Woody Plant Transformation: Current Status, Challenges, and Future Perspectives

Woody plants, comprising forest and fruit tree species, provide essential ecological and economic benefits to society. Their genetic improvement is challenging due to long generation intervals and high heterozygosity. Genetic transformation, which combines targeted DNA delivery with plant regeneration from transformed cells, offers a powerful alternative to accelerating their domestication and improvement. Agrobacterium tumefaciens, Rhizobium rhizogenes, and particle bombardment have been widely used for DNA delivery into a wide variety of explants, including leaves, stems, hypocotyls, roots, and embryos, with regeneration occurring via direct organogenesis, callus-mediated organogenesis, somatic embryogenesis, or hairy root formation. Despite successes, conventional approaches are hampered by low efficiency, genotype dependency, and a reliance on challenging tissue culture. This review provides a critical analysis of the current landscape in woody plant transformation, moving beyond a simple summary of techniques to evaluate the co-evolution of established platforms with disruptive technologies. Key advances among these include the use of developmental regulators to engineer regeneration, the rise in in planta systems to bypass tissue culture, and the imperative for DNA-free genome editing to meet regulatory and public expectations. By examining species-specific breakthroughs in key genera, including Populus, Malus, Citrus, and Pinus, this review highlights a paradigm shift from empirical optimization towards rational, predictable engineering of woody plants for a sustainable future.

Agrobacterium tumefaciens

Coastal High-resolution Observations and Remote Sensing of Ecosystems (C-HORSE)

Coastal benthic marine ecosystems, such as coral reefs, seagrass beds, and kelp forests are highly productive as well as ecologically and commercially important resources. These systems are vulnerable to degraded water quality due to coastal development, terrestrial run-off, and harmful algal blooms. Measurements of these features are important for understanding linkages with land-based sources of pollution and impacts to coastal ecosystems. Challenges for accurate remote sensing of coastal benthic (shallow water) ecosystems and water quality are complicated by atmospheric scattering/absorption (approximately 80+% of the signal), sun glint from the sea surface, and water column scattering (e.g., turbidity). Further, sensor challenges related to signal to noise (SNR) over optically dark targets as well as insufficient radiometric calibration thwart the value of coastal remotely-sensed data. Atmospheric correction of satellite and airborne remotely-sensed radiance data is crucial for deriving accurate water-leaving radiance in coastal waters. C-HORSE seeks to optimize coastal remote sensing measurements by using a novel airborne instrument suite that will bridge calibration, validation, and research capabilities of bio-optical measurements from the sea to the high altitude remote sensing platform. The primary goal of C-HORSE is to facilitate enhanced optical observations of coastal ecosystems using state of the art portable microradiometers with 19 targeted spectral channels and flight planning to optimize measurements further supporting current and future remote sensing missions.

Coasts

Tracking the Rates and Mechanisms of Canopy Damage and Recovery Following Hurricane Maria Using Multitemporal Lidar Data

Hurricane Maria, a Category 4 storm, snapped and uprooted canopy trees, removed large branches, and defoliated vegetation across Puerto Rico. The magnitude of forest damages and the rates and mechanisms of forest recovery following Maria provide important benchmarks for understanding the ecology of extreme events. We used airborne Lidar data acquired before (2017) and after Maria (2018, 2020) to quantify landscape-scale changes in forest structure along a 439-ha elevational gradient (100–800 m) in the Luquillo Experimental Forest. Damages from Maria were widespread, with 73% of the study area losing ≥ 1 m in canopy height (mean = −7.1 m). Taller forests at lower elevations suffered more damage than shorter forests above 600 m. Yet only 13.5% of the study area had canopy heights ≤ 2 m in 2018, a typical threshold for forest gaps, highlighting the importance of damaged trees and advanced regeneration on post-storm forest structure. Heterogeneous patterns of regrowth and recruitment yielded shorter and more open forests by 2020. Nearly 45% of forests experienced initial height loss > 1 m (2017–2018) followed by rapid height gain > 1 m (2018–2020), whereas 21.6% of forests with initial height losses showed little or no height gain, and 17.8% of forests exhibited no height changes larger than ± 1 m in either period. Canopy layers < 10 m tall accounted for most increases in canopy height and fractional cover between 2018 and 2020, with gains split evenly between height growth and lateral crown expansion by surviving individuals. These findings benchmark rates of gap formation, crown expansion, and canopy closure following hurricane damage and highlight the diversity of ecosystem impacts from heterogeneous spatial patterns and vertical stratification of forest regrowth following a major disturbance event.

forest structure

Tracking the Rates and Mechanisms of Canopy Damage and Recovery Following Hurricane Maria Using Multitemporal Lidar Data

Hurricane Maria, a Category 4 storm, snapped and uprooted canopy trees, removed large branches, and defoliated vegetation across Puerto Rico. The magnitude of forest damages and the rates and mechanisms of forest recovery following Maria provide important benchmarks for understanding the ecology of extreme events. We used airborne Lidar data acquired before (2017) and after Maria (2018, 2020) to quantify landscape-scale changes in forest structure along a 439-ha elevational gradient (100–800 m) in the Luquillo Experimental Forest. Damages from Maria were widespread, with 73% of the study area losing ≥ 1 m in canopy height (mean = −7.1 m). Taller forests at lower elevations suffered more damage than shorter forests above 600 m. Yet only 13.5% of the study area had canopy heights ≤ 2 m in 2018, a typical threshold for forest gaps, highlighting the importance of damaged trees and advanced regeneration on post-storm forest structure. Heterogeneous patterns of regrowth and recruitment yielded shorter and more open forests by 2020. Nearly 45% of forests experienced initial height loss > 1 m (2017–2018) followed by rapid height gain > 1 m (2018–2020), whereas 21.6% of forests with initial height losses showed little or no height gain, and 17.8% of forests exhibited no height changes larger than ± 1 m in either period. Canopy layers < 10 m tall accounted for most increases in canopy height and fractional cover between 2018 and 2020, with gains split evenly between height growth and lateral crown expansion by surviving individuals. These findings benchmark rates of gap formation, crown expansion, and canopy closure following hurricane damage and highlight the diversity of ecosystem impacts from heterogeneous spatial patterns and vertical stratification of forest regrowth following a major disturbance event.

forest structure

Variation in forest root image annotation by experts, novices, and AI

Abstract Background The manual study of root dynamics using images requires huge investments of time and resources and is prone to previously poorly quantified annotator bias. Artificial intelligence (AI) image-processing tools have been successful in overcoming limitations of manual annotation in homogeneous soils, but their efficiency and accuracy is yet to be widely tested on less homogenous, non-agricultural soil profiles, e.g., that of forests, from which data on root dynamics are key to understanding the carbon cycle. Here, we quantify variance in root length measured by human annotators with varying experience levels. We evaluate the application of a convolutional neural network (CNN) model, trained on a software accessible to researchers without a machine learning background, on a heterogeneous minirhizotron image dataset taken in a multispecies, mature, deciduous temperate forest. Results Less experienced annotators consistently identified more root length than experienced annotators. Root length annotation also varied between experienced annotators. The CNN root length results were neither precise nor accurate, taking ~ 10% of the time but significantly overestimating root length compared to expert manual annotation ( p = 0.01). The CNN net root length change results were closer to manual ( p = 0.08) but there remained substantial variation. Conclusions Manual root length annotation is contingent on the individual annotator. The only accessible CNN model cannot yet produce root data of sufficient accuracy and precision for ecological applications when applied to a complex, heterogeneous forest image dataset. A continuing evaluation and development of accessible CNNs for natural ecosystems is required.

Handy, Grace

Climate-Induced Boreal Forest Change: Predictions versus Current Observations

For about three decades, there have been many predictions of the potential ecological response in boreal regions to the currently warmer conditions. In essence, a widespread, naturally occurring experiment has been conducted over time. In this paper, we describe previously modeled predictions of ecological change in boreal Alaska, Canada and Russia, and then we investigate potential evidence of current climate-induced change. For instance, ecological models have suggested that warming will induce the northern and upslope migration of the treeline and an alteration in the current mosaic structure of boreal forests. We present evidence of the migration of keystone ecosystems in the upland and lowland treeline of mountainous regions across southern Siberia. Ecological models have also predicted a moisture-stress-related dieback in white spruce trees in Alaska, and current investigations show that as temperatures increase, white spruce tree growth is declining. Additionally, it was suggested that increases in infestation and wildfire disturbance would be catalysts that precipitate the alteration of the current mosaic forest composition. In Siberia, five of the last seven years have resulted in extreme fire seasons, and extreme fire years have also been more frequent in both Alaska and Canada. In addition, Alaska has experienced extreme and geographically expansive multi-year outbreaks of the spruce beetle, which had been previously limited by the cold, moist environment. We suggest that there is substantial evidence throughout the circumboreal region to conclude that the biosphere within the boreal terrestrial environment has already responded to the transient effects of climate change. Additionally, temperature increases and warming-induced change are progressing faster than had been predicted in some regions, suggesting a potential non-linear rapid response to changes in climate, as opposed to the predicted slow linear response to climate change.

Soja, Amber J.

Using ecological zones to increase the detail of Landsat classifications

Changes in classification detail of forest species descriptions were made for Landsat data on 2.2 million acres in northwestern California. Because basic forest canopy structures may exhibit very similar E-M energy reflectance patterns in different environmental regions, classification labels based on Landsat spectral signatures alone become very generalized when mapping large heterogeneous ecological regions. By adding a seven ecological zone stratification, a 167% improvement in classification detail was made over the results achieved without it. The seven zone stratification is a less costly alternative to the inclusion of complex collateral information, such as terrain data and soil type, into the Landsat data base when making inventories of areas greater than 500,000 acres.

Fox, L., III

Hierarchical analysis of spatial pattern and processes of Douglas-fir forests

There has been an increased interest in the quantification of pattern in ecological systems over the past years. This interest is motivated by the desire to construct valid models which extend across many scales. Spatial methods must quantify pattern, discriminate types of pattern, and relate hierarchical phenomena across scales. Wavelet analysis is introduced as a method to identify spatial structure in ecological transect data. The main advantage of the wavelet transform over other methods is its ability to preserve and display hierarchical information while allowing for pattern decomposition. Two applications of wavelet analysis are illustrated, as a means to: (1) quantify known spatial patterns in Douglas-fir forests at several scales, and (2) construct spatially-explicit hypotheses regarding pattern generating mechanisms. Application of the wavelet variance, derived from the wavelet transform, is developed for forest ecosystem analysis to obtain additional insight into spatially-explicit data. Specifically, the resolution capabilities of the wavelet variance are compared to the semi-variogram and Fourier power spectra for the description of spatial data using a set of one-dimensional stationary and non-stationary processes. The wavelet cross-covariance function is derived from the wavelet transform and introduced as a alternative method for the analysis of multivariate spatial data of understory vegetation and canopy in Douglas-fir forests of the western Cascades of Oregon.

Bradshaw, G. A.

BOREAS (Boreal Ecosystem-Atmosphere Study): Global change and biosphere-atmosphere interactions in the boreal forest

The Boreal Ecosystems Atmosphere Study (BOREAS) is a cooperative field and analysis project involving elements of land surface climatology, tropospheric chemistry, and terrestrial ecology. The goal of the study is to understand the interactions between the boreal forest biome and the atmosphere in order to clarify their roles in global change. The study will be centered on two 20 by 20 km sites within the North American boreal forest region, located near the northern and southern limits of the biome. Studies based at these sites will be used to explore the roles of various environmental factors in controlling the extent and character of the biome. The sites will be the subject of surface, airborne, and satellite based observations which aim to improve understanding of the biological and physical processes and states which govern the exchanges of energy, water, carbon, and trace gases between boreal forest ecosystems and the atmosphere. Particular reference will be made to those processes and states that may be sensitive to global change. The study also aims to develop the use of remote sensing techniques to transfer understanding of the above process from local scales out to regional scales. The BOREAS project is being planned for 1992-1996, with a major field effort in 1994.

Sellers, Piers J.

Gila Water Resources II: Using Earth Observations to Identify Wildfire Impacts on Hydrologic Functions and Recovery in the Gila National Forest

Wildfires have the potential to cause devastating and long-lasting impacts on ecological systems. In the Gila NF, wildfire events have occurred with increasing frequency and severity over recent years. These disturbances such as the historic Whitewater-Baldy Complex Fire (2012) and Silver Fire (2013) have raised concerns over post-fire soil erosion, flooding, debris flows, and vegetation recovery. Understanding the connection between burn events and ecological functions is crucial for developing effective land management practices within the Gila NF that ensure the conservation of the watershed. Our Gila Water Resources II team worked in partnership with the US Department of Agriculture (USDA) US Forest Service’s (USFS) Gila National Forest and Region 3. This project was designed to provide insight into the influence of wildfires on increased flooding events and to determine if restoration efforts in the Gila NF are having a beneficial and noticeable impact on recovery. The goals of this project included generating data-supported end products to inform land management decisions, including the prioritization of specific regions and time scales for post-fire restoration efforts. To understand recovery trends and hydrologic impact in the Gila NF between 2000 and 2020, this project used NASA EO and ancillary data, including, but not limited to, Landsat 5 Thematic Mapper (TM), Landsat 7 Enhanced Thematic Mapper Plus (ETM+), Landsat 8 Operational Land Imager (OLI), USGS stream gauge data, and data provided by USDA USFS’s Gila National Forest and Region 3.

Water Resources

COVID-19 Lockdowns Drive Decline in Active Fires in Southeastern United States

Fire is a common ecosystem process in forests and grasslands worldwide. Increasingly, ignitions are controlled by human activities either through suppression of wildfires or intentional ignition of prescribed fires. The Southeastern United States leads the nation in prescribed fire, burning ca. 80% of the countries extent annually. The COVID-19 pandemic radically changed human behavior as workplaces implemented social-distancing guidelines and provided an opportunity to evaluate relationships between humans and fire as fire management plans were postponed or cancelled. Using active fire data from satellite-based observations, we found that in the Southeastern United States, COVID-19 led to a 21% reduction in fire activity compared to the 2003-2019 average. The reduction was more pronounced for federally managed lands, up to 41% below average compared to the past 20-years (38% below average compared to the past decade). Declines in fire activity were partly affected by an unusually wet February before the COVID-19 shutdown began in mid-March 2020. Despite the wet spring, the predicted number of active fire detections was still lower than expected, confirming a COVID-19 signal on ignitions. In addition, prescribed fire management statistics, reported by US federal agencies, confirmed the satellite observations, and showed that following the wet February and before the mid-March COVID-19 shutdown, cumulative burned area was approaching record highs across the region. With fire return intervals in the Southeastern United States as frequent as 1-2 years, COVID-19 fire impacts will contribute to an increasing backlog in necessary fire management activities, affecting biodiversity and future fire danger.

Biological Sciences