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89 records · Page 5

Implementation of a practical Markov chain Monte Carlo sampling algorithm in PyBioNetFit

Abstract Summary Bayesian inference in biological modeling commonly relies on Markov chain Monte Carlo (MCMC) sampling of a multidimensional and non-Gaussian posterior distribution that is not analytically tractable. Here, we present the implementation of a practical MCMC method in the open-source software package PyBioNetFit (PyBNF), which is designed to support parameterization of mathematical models for biological systems. The new MCMC method, am, incorporates an adaptive move proposal distribution. For warm starts, sampling can be initiated at a specified location in parameter space and with a multivariate Gaussian proposal distribution defined initially by a specified covariance matrix. Multiple chains can be generated in parallel using a computer cluster. We demonstrate that am can be used to successfully solve real-world Bayesian inference problems, including forecasting of new Coronavirus Disease 2019 case detection with Bayesian quantification of forecast uncertainty. Availability and implementation PyBNF version 1.1.9, the first stable release with am, is available at PyPI and can be installed using the pip package-management system on platforms that have a working installation of Python 3. PyBNF relies on libRoadRunner and BioNetGen for simulations (e.g. numerical integration of ordinary differential equations defined in SBML or BNGL files) and Dask.Distributed for task scheduling on Linux computer clusters. The Python source code can be freely downloaded/cloned from GitHub and used and modified under terms of the BSD-3 license (https://github.com/lanl/pybnf). Online documentation covering installation/usage is available (https://pybnf.readthedocs.io/en/latest/). A tutorial video is available on YouTube (https://www.youtube.com/watch?v=2aRqpqFOiS4&t=63s). Supplementary information Supplementary data are available at Bioinformatics online.

59 BASIC BIOLOGICAL SCIENCES↗

Probabilistic Hydropower Flexibility Valuation: Case Studies for Boating Flow Regime

The optimal scheduling of hydropower generation holds significant importance to power system operation. The unique requirements of environmental constraints and the power system, depending on their respective objectives, demand distinct flow patterns. While power system stakeholders strive to optimize revenue in electricity markets, stakeholders from boating recreation seeks to identify flow ranges that optimize the boating experience. In pursuit of a win-win solution, this study aims to reconcile the interests of various stakeholders in hydropower scheduling. The maximum revenue from day-ahead electricity market is explored through an optimization process considering both plant operation constraints, boating flow constraints, water availability, and market prices. Results of real world case studies at a river in California show that the proposed approach can achieve dual objectives: maximizing market revenue while addressing boating recreation necessities. In addition, as the accuracy of electricity price forecasting and flow forecasting increase, the optimal revenue becomes increasingly advantageous to hydropower plant operators.

13 HYDRO ENERGY↗

EpiCast: Simulating Epidemics with Extreme Detail

In early 2020, COVID-19 swept the globe. Governments attempted to “flatten the curve” through business shutdowns and stay-at-home orders, but the United States was hit hard. By the end of March, mere months after the virus first emerged in humans 7,000 miles away, the U.S. had recorded 192,300 cases and 5,300 deaths. While this unprecedented disaster sent shockwaves through every level of society and clouded an uncertain future, state and local governments turned to computational and mathematical epidemiology researchers to help formulate intervention strategies to limit the spread of the disease. Traditional forecasting models provided a reasonable understanding of how the near future was likely to look, but local policy makers and public health communities still struggled to understand how potential mitigations ought to be implemented. Decision makers needed a way to measure the impact of their policy choices—they needed better technology. EpiCast answered the call, bringing urgently needed answers to policymakers grappling with how to adjust school and business schedules. EpiCast is modeling software that generates a synthetic, representative population to simulate infectious disease transmission in the United States with extreme detail and granularity. The software models human behavior combined with community-specific information to provide a fine-grained preview of the effect of potential mitigation strategies for decision makers.

60 APPLIED LIFE SCIENCES↗

Towards Net Zero: Modeling Approach to the Right-Sized Facilities

As the concentration of greenhouse gases (GHGs) in the atmosphere increases, the concerns about carbon emissions are growing. Several net-zero initiatives are taking place around the globe to achieve a balance between the GHGs put into the atmosphere and those taken out. While most efforts present a sectorized approach, this paper describes the importance of integrating information across different sectors for effective modeling of carbon emissions and holistic reduction opportunity analysis. Using the Idaho National Laboratory (INL) campus as a test case, this work provides a web-based tool for INL stakeholders to use when engaging in strategic planning to achieve carbon emissions reduction. This net-zero engineering support tool (NEST) uses historical data as foundational information for applying the modeling framework. Prediction of CO 2 emissions throughout project completion integrates various approaches and schedules aimed at energy conservation, fleet decarbonization, and other GHG reduction activities. Using NEST, stakeholders can visualize carbon emissions, electricity consumption, and costs for decision making when planning the pathway for reaching carbon net zero. The INL’s initiative to transition into an EV fleet was used to demonstrate the developed framework and the advantages of using NEST. It was shown that electrifying different fossil-fueled campus vehicles before 2030 with aggressive replacement schedules require high annual capital expenditure (CAPEX), which may not be available. The tool allows decision makers to test different replacement schedules and prioritize those that yield CAPEX below a certain threshold while meeting target milestones. While the demonstration focused on vehicle electrification, the developed framework lays the foundation for further quantitative analysis of other GHG reduction activities.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Assessment of wind power scenario creation methods for stochastic power systems operations

Probabilistic scenarios of renewable energy production, such as wind, have been gaining popularity for use in stochastic variants of power systems operations scheduling problems, allowing for optimal decision-making under uncertainty. The quality of the scenarios has a direct impact on the value of the resulting decisions, but until now, methods for creating scenarios have not been compared under realistic operational conditions. Here, we compare the quality of scenario sets created using three different methods, based on a simulated re-enactment of stochastic day-ahead unit commitment and subsequent dispatch for a realistic test system. We create scenarios using a dataset of forecasted and actual wind power values, scaled to evaluate the effects of increasing wind penetration levels. We show that the choice of scenario set can significantly impact system operating cost, renewable energy use, and the ability of the system to meet demand. This result has implications for the ability of system operators to efficiently integrate renewable production into their day-ahead planning, highlighting the need for the use of performance-based assessments for scenario evaluation.

17 WIND ENERGY↗

Tri-level hybrid interval-stochastic optimal scheduling for flexible residential loads under GAN-assisted multiple uncertainties

Various building loads, such as heating, ventilation, and air conditioners (HVACs), electric water heaters (EWHs), and electric vehicles (EVs), can introduce opportunities for improving the flexibility of electricity consumption while satisfying the needs of building owners as well as benefiting the resilience of distribution system. To utilize such flexibility, a tri-level distribution market framework is established, including residential consumers, load aggregators (LAs), and the distribution system operator (DSO). In this work, the uncertainties from all three levels are considered. The random consumption behavior at the consumer level is modeled as a Gaussian noise that is also aggregated and transmitted to the LA level. The weather temperature in the LA level is forecasted as an interval, and the photovoltaic (PV) power in the market-clearing level is modeled by a set of power scenarios generated by Generative Adversarial Networks (GANs). Then, a hybrid interval-stochastic programming is proposed to transform the uncertain problems in the first two levels into deterministic ones. For real-time implementations, a rolling horizon optimization (RHO) scheme is employed to continuously optimize the power consumption based on the latest operating information. Finally, case studies on a modified IEEE 69-bus system validate the effectiveness of the proposed uncertainty modeling strategies and the RHO scheme.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Machine learning of factors for improving oyster hatchery production

Oyster aquaculture and restoration in the Chesapeake Bay are vital, yet hatcheries frequently struggle with inconsistent larval growth and sudden mass mortality events. Unpredictable disruptions in larval production cause large economic losses, represent a perceived risk to growers, and impede industry expansion. To better understand associations between production yield and its potential predictors, we applied machine learning (random forest, and neural network) and statistical (generalized additive model) models to a comprehensive dataset of environmental, water quality, and operational parameters from a Maryland oyster hatchery, aiming to identify key yield predictors and develop a robust forecasting tool. We used recursive Boruta algorithm for variable selection, pinpointing critical predictors, and employed cross-validation to fine-tune model settings. Shapley value analysis offered crucial insights into model interpretations, highlighting week number, Normalized Difference Vegetation Index, salinity, turbidity, and fecundity as primary drivers of yield variability. For low-yield cases, salinity-related variables were particularly important. Our findings provide an early warning system for potential production downturns, empowering hatchery operators to make data-driven decisions for optimizing water conditions, feeding schedules, and broodstock management. By boosting predictability and efficiency, this research directly supports economic stability of the oyster industry and ecological health of the Chesapeake Bay.

Vishwakarma, Srishti [Oak Ridge National Laborator↗

Short-Term Rainfall Prediction Based on Radar Echo Using an Improved Self-Attention PredRNN Deep Learning Model

Accurate short-term precipitation forecast is extremely important for urban flood warning and natural disaster prevention. In this paper, we present an innovative deep learning model named ISA-PredRNN (improved self-attention PredRNN) for precipitation nowcasting based on radar echoes on the basis of the advanced PredRNN-V2. We introduce the self-attention mechanism and the long-term memory state into the model and design a new set of gating mechanisms. To better capture different intensities of precipitation, the loss function with weights was designed. We further train the model using a combination of reverse scheduled sampling and scheduled sampling to learn the long-term dynamics from the radar echo sequences. Experimental results show that the new model (ISA-PredRNN) can effectively extract the spatiotemporal features of radar echo maps and obtain radar echo prediction results with a small gap from the ground truths. From the comparison with the other six models, the new ISA-PredRNN model has the most accurate prediction results with a critical success index (CSI) of 0.7001, 0.5812 and 0.3052 under the radar echo thresholds of 10 dBZ, 20 dBZ and 30 dBZ, respectively.

Wu, Dali (ORCID:0000000231177074)↗

Simulations suggest offshore wind farms modify low-level jets

Abstract. Offshore wind farms are scheduled to be constructed along the East Coast of the US in the coming years. Low-level jets (LLJs) – layers of relatively fast winds at low altitudes – also occur frequently in this region. Because LLJs provide considerable wind resources, it is important to understand how LLJs might change with turbine construction. LLJs also influence moisture and pollution transport; thus, the effects of wind farms on LLJs could also affect the region’s meteorology. In the absence of observations or significant wind farm construction as yet, we compare 1 year of simulations from the Weather Research and Forecasting (WRF) model with and without wind farms incorporated, focusing on locations chosen by their proximity to future wind development areas. We develop and present an algorithm to detect LLJs at each hour of the year at each of these locations. We validate the algorithm to the extent possible by comparing LLJs identified by lidar, constrained to the lowest 200 m, to WRF simulations of these very low LLJs (vLLJs). In the NOW-WAKES simulation data set, we find offshore LLJs in this region occur about 25 % of the time, most frequently at night, in the spring and summer months, in stably stratified conditions, and when a southwesterly wind is blowing. LLJ wind speed maxima range from 10 m s−1 to over 40 m s−1. The altitude of maximum wind speed, or the jet “nose”, is typically 300 m above the surface, above the height of most profiling lidars, although several hours of vLLJs occur in each month in the data set. The diurnal cycle for vLLJs is less pronounced than for all LLJs. Wind farms erode LLJs, as LLJs occur less frequently (19 %–20 % of hours) in the wind farm simulations than in the no-wind-farm (NWF) simulation (25 % of hours). When LLJs do occur in the simulation with wind farms, their noses are higher than in the NWF simulation: the LLJ nose has a mean altitude near 300 m for the NWF jets, but that nose height moves higher in the presence of wind farms, to a mean altitude near 400 m. Rotor region (30–250 m) wind veer is reduced across almost all months of the year in the wind farm simulations, while rotor region wind shear is similar in both simulations.

17 WIND ENERGY↗

Energy and Emission Prediction for Mixed-Vehicle Transit Fleets Using Multi-task and Inductive Transfer Learning

Public transit agencies are focused on making their fixed-line bus systems more energy efficient by introducing electric (EV) and hybrid (HV) vehicles to their fleets. However, because of the high upfront cost of these vehicles, most agencies are tasked with managing a mixed-fleet of internal combustion vehicles (ICEVs), EVs, and HVs. In managing mixed-fleets, agencies require accurate predictions of energy use for optimizing the assignment of vehicles to transit routes, scheduling charging, and ensuring that emission standards are met. The current state-of-the-art is to develop separate neural network models to predict energy consumption for each vehicle class. Although different vehicle classes’ energy consumption depends on a varied set of covariates, we hypothesize that there are broader generalizable patterns that govern energy consumption and emissions. In this paper, we seek to extract these patterns to aid learning to address two problems faced by transit agencies. First, in the case of a transit agency which operates many ICEVs, HVs, and EVs, we use multi-task learning (MTL) to improve accuracy of forecasting energy consumption. Second, in the case where there is a significant variation in vehicles in each category, we use inductive transfer learning (ITL) to improve predictive accuracy for vehicle class models with insufficient data. As this work is to be deployed by our partner agency, we also provide an online pipeline for joining the various sensor streams for fixed-line transit energy prediction. Here, we find that our approach outperforms vehicle-specific baselines in both the MTL and ITL settings.

97 MATHEMATICS AND COMPUTING↗

Large-scale scenarios of electric vehicle charging with a data-driven model of control

Transportation electrification is forecast to bring millions of new electric vehicles to roads worldwide this decade. Planning to support those vehicles depends on detailed scenarios of their electricity demand in both uncontrolled and controlled or smart charging scenarios. In this work, we present a novel modeling approach to enable rapid generation of demand estimates that represent the impact of controlled charging for large-scale scenarios with millions of individual drivers. To model the effect of load modulation control on aggregate charging profiles, we propose a novel machine learning approach that replaces traditional optimization approaches. We demonstrate its performance modeling workplace charging control under a range of electricity rate schedules, achieving small errors (2.5%–4.5%) while accelerating computations by more than 4000 times. To generate the uncontrolled charging demand for scenarios with residential, workplace, and public charging we use statistical representations of a large data set of real charging sessions. We demonstrate the methodology by generating diverse sets of scenarios for California's charging demand in 2030 which consider multiple charging segments and controls, each run locally in under 50 s. We further demonstrate support for rate design by modeling the large-scale impact of a new, custom rate schedule for workplace charging.

33 ADVANCED PROPULSION SYSTEMS↗

Forecasting and modeling of the COVID-19 pandemic in the USA with a timed intervention model

We propose a novel Timed Intervention S, P, E, I, Q, R, D model for projecting the possible futures of the COVID-19 pandemic in the USA. The proposed model introduces a series of timed interventions that can account for the influence of real time changes in government policy and social norms. We consider three separate types of interventions: (i) Protective interventions: Where population moves from susceptible to protected corresponding to mask mandates, stay-at-home orders and/or social distancing. (ii) Release interventions: Where population moves from protected to susceptible corresponding to social distancing mandates and practices being lifted by policy or pandemic fatigue. (iii) Vaccination interventions: Where population moves from susceptible, protected, and exposed to recovered (meaning immune) corresponding to the mass immunization of the U.S. Population. By treating the pandemic with timed interventions, we are able to model the pandemic extremely effectively, as well as directly predicting the course of the pandemic under differing sets of intervention schedules. We show that without prompt effective protective/vaccination interventions the pandemic will be extended significantly and result in many millions of deaths in the U.S.

60 APPLIED LIFE SCIENCES↗

Cyclic Injection Leads to Larger and More Frequent Induced Earthquakes under Volume-Controlled Conditions

As carbon storage technologies advance globally, methods to understand and mitigate induced earthquakes become increasingly important. Although the physical processes that relate increased subsurface pore pressure changes to induced earthquakes have long been known, reliable methods to forecast and control induced seismic sequences remain elusive. Suggested reservoir engineering scenarios for mitigating induced earthquakes typically involve modulation of the injection rate. Some operators have implemented periodic shutdowns (i.e., effective cycling of injection rates) to allow reservoir pressures to equilibrate (e.g., Paradox Valley) or shut-in wells after the occurrence of an event of concern (e.g., Basel, Switzerland). Other proposed scenarios include altering injection rates, actively managing pressures through coproduction of fluids, and preinjection brine extraction. Here, in this work, we use 3D physics-based earthquake simulations to understand the effects of different injection scenarios on induced earthquake rates, maximum event magnitudes, and postinjection seismicity. For comparability, the modeled injection considers the same cumulative volume over the project’s operational life but varies the schedule and rates of fluid injected. Simulation results show that cyclic injection leads to more frequent and larger events than constant injection. Furthermore, with intermittent injection scenario, a significant number of events are shown to occur during pauses in injection, and the seismicity rate remains elevated for longer into the postinjection phase compared to the constant injection scenario.

58 GEOSCIENCES↗

Branching Dueling Q-Network Based Online Scheduling of a Microgrid With Distributed Energy Storage Systems

This letter investigates a Branching Dueling Q-Network (BDQ) based online operation strategy for a microgrid with distributed battery energy storage systems (BESSs) operating under uncertainties. Additionally, the developed deep reinforcement learning (DRL) based microgrid online optimization strategy can achieve a linear increase in the number of neural network outputs with the number of distributed BESSs, which overcomes the curse of dimensionality caused by the charge and discharge decisions of multiple BESSs. Numerical simulations validate the effectiveness of the proposed method.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Modeling and Detection of Future Cyber-Enabled DSM Data Attacks

Demand-Side Management (DSM) is an essential tool to ensure power system reliability and stability. In future smart grids, certain portions of a customer’s load usage could be under the automatic control of a cyber-enabled DSM program, which selectively schedules loads as a function of electricity prices to improve power balance and grid stability. In this scenario, the security of DSM cyberinfrastructure will be critical as advanced metering infrastructure and communication systems are susceptible to cyber-attacks. Such attacks, in the form of false data injections, can manipulate customer load profiles and cause metering chaos and energy losses in the grid. The feedback mechanism between load management on the consumer side and dynamic price schemes employed by independent system operators can further exacerbate attacks. To study how this feedback mechanism may worsen attacks in future cyber-enabled DSM programs, we propose a novel mathematical framework for (i) modeling the nonlinear relationship between load management and real-time pricing, (ii) simulating residential load data and prices, (iii) creating cyber-attacks, and (iv) detecting said attacks. In this framework, we first develop time-series forecasts to model load demand and use them as inputs to an elasticity model for the price-demand relationship in the DSM loop. This work then investigates the behavior of such a feedback loop under intentional cyber-attacks. We simulate and examine load-price data under different DSM-participation levels with three types of random additive attacks: ramp, sudden, and point attacks. We conduct two investigations for the detection of DSM attacks. The first studies a supervised learning approach, with various classification models, and the second studies the performance of parametric and nonparametric change point detectors. Results conclude that higher amounts of DSM participation can exacerbate ramp and sudden attacks leading to better detection of such attacks, especially with supervised learning classifiers. We also find that nonparametric detection outperforms parametric for smaller user pools, and random point attacks are the hardest to detect with any method.

97 MATHEMATICS AND COMPUTING↗

Impact of Transport Electrification Demand and Charging Schedules on Electricity Markets and Nuclear Generators

As the U.S. pursues deep decarbonization targets, electric vehicles (EVs) are likely to become a major driver of demand growth and a major determinant of daily demand patterns. This study analyzes a possible future ERCOT-like electricity grid, and examines the impact of different types of EV charging schedules on grid and market outcomes. This analysis demonstrates the significant impact of EV charging patterns on capacity expansion simulations. Even without EVs, the overall daily demand profile in a market can have significant impacts on prices and grid stability in that system, especially if non-dispatchable renewable generators (e.g. wind and solar) make up a significant fraction of the generation mix. EV demand will not necessarily follow this preexisting demand profile, so its daily trends may significantly change what generation portfolio would optimally serve the system. Furthermore, the effects of EV demand can alter the profitability of different types of units, by altering the frequency of market events like extreme-demand hours or zero-price hours. These effects are explored in this study. The EV demand levels were derived from MARKAL simulations of the West-South-Central North American Electric Reliability Corporation (NERC) region for the year 2050, using a carbon tax of $100/ton. The baseline MARKAL simulation forecasted that 23% of the region’s annual electricity demand in 2050 would be attributable to EVs, and broke out demand projections for EV and non-EV end-use in that year. To model lower EV penetration into the system, an additional case was explored which assumed that EVs only achieved 75% of the demand level projected by MARKAL.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Designing an Optimal LSST Deep Drilling Program for Cosmology with Type Ia Supernovae

The Vera C. Rubin Observatory's Legacy Survey of Space and Time (LSST) is forecast to collect a large sample of Type Ia supernovae (SNe Ia) expected to be instrumental in unveiling the nature of dark energy. The feat, however, requires accurately measuring the two components of the Hubble diagram, distance modulus and redshift. Distance is estimated from SN Ia parameters extracted from light-curve fits, where the average quality of light curves is primarily driven by survey parameters. An optimal observing strategy is thus critical for measuring cosmological parameters with high accuracy. We present in this paper a three-stage analysis to assess the impact of the deep drilling (DD) strategy parameters on three critical aspects of the survey: redshift completeness, the number of well-measured SNe Ia, and cosmological measurements. We demonstrate that the current DD survey plans (internal LSST simulations) are characterized by a low completeness (z ~ 0.55–0.65), and irregular and low cadences (several days), which dramatically decrease the size of the well-measured SN Ia sample. We propose a method providing the number of visits required to reach higher redshifts. We use the results to design a set of optimized DD surveys for SN Ia cosmology taking full advantage of spectroscopic resources for host galaxy redshift measurements. The most accurate cosmological measurements are achieved with deep rolling surveys characterized by a high cadence (1 day), a rolling strategy (at least two seasons of observation per field), and ultradeep (z ≳ 0.8) and deep (z ≳ 0.6) fields. A deterministic scheduler including a gap recovery mechanism is critical to achieving a high-quality DD survey.

79 ASTRONOMY AND ASTROPHYSICS↗