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At least 91 records · Page 5
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Cellular metabolic stress responses via organelles

Metabolite fluctuations following nutrient metabolism or environmental stresses impact various intracellular signaling networks and stress responses to maintain cellular and organismal homeostasis. It has been shown that subcellular organelles, such as the endoplasmic reticulum, the Golgi apparatus, lysosomes and mitochondria serve as crucial hubs linking alterations in metabolite levels to cellular responses. This role is coordinated by molecular machineries that are associated with the lipid membranes of organelles, which sense the fluctuations in specific metabolites and activate the appropriate signaling and effector molecules. Moreover, recent studies have demonstrated that membraneless organelles, such as the nucleolus and stress granules, are involved in the metabolic stress response. Metabolite-induced post-translational modifications appear to play an important role in this process. Here, we review the molecular mechanisms of metabolite sensing and metabolite-mediated stress responses through membrane-bound and membraneless organelles in mammalian cells.

60 APPLIED LIFE SCIENCES↗
NASA NTRS1994

Termination shock response to large-scale solar wind fluctuations

The analysis of data recorded by the Voyager 2 spacecraft indicates the presence of large-scale fluctuations in the solar wind ram pressure on the time scale of tens of days. The amplitude of the fluctuations is highly variable but often lies within a factor of 5 to 10 change from an average or mean value of the ram pressure. Since the spacecraft has presumably not encountered the termination shock yet, these fluctuations should eventually interact with the shock and thereby play a role in determining the shock location. Numerical solutions of the time-dependent gasdynamic equations are used to simulate the response of the termination shock to fluctuations in the solar wind ram pressure comparable to those observed. The primary result of this study is that the maximum shock excursion due to the fluctuations is of the order of 1 AU, which is much smaller than that predicted by other studies. Additional simulations show that the limited movement is due to the fact that the time scale for the termination shock response is substantially larger than the time scale of the fluctuations. It is also shown that the heliopause acts as a barrier for the fluctuations and confines them to the heliosphere.

Steinolfson, R. S.↗
NASA NTRS1994

Termination shock response to large-scale solar wind fluctuations

The analysis of data recorded by the Voyager 2 spacecraft indicates the presence of large-scale fluctuations in the solar wind ram pressure on the time scale of tens of days. The amplitude of the fluctuations is highly variable but often lies within a factor of 5 to 10 change from an average or mean value of the ram pressure. Since the spacecraft has presumably not encountered the termination shock yet, these fluctuations should eventually interact with the shock and thereby play a role in determining the shock location. Numerical solutions of the time-dependent gas dynamic equations are used to simulate the response of the termination shock to fluctuations in the solar wind ram pressure comparable to those observed. The primary result of this study is that the maximum shock excursion due to the fluctuations is of the order of 1 AU, which is much smaller than that predicted by other studies. Additional simulations show that the limited movement is due to the fact that the time scale for the termination shock response is substantially larger than the time scale of the fluctuations. It is also shown that the heliopause acts as a barrier for the fluctuations and confines them to the heliosphere.

Steinolfson, R. S.↗
DOE OSTI2025

Computing Nonequilibrium Responses with Score-Shifted Stochastic Differential Equations

Using equilibrium fluctuations to understand the response of a physical system to an externally imposed perturbation is the basis for linear response theory, which is widely used to interpret experiments and shed light on microscopic dynamics. For nonequilibrium systems, perturbations cannot be interpreted simply by monitoring fluctuations in a conjugate observable and general response results rely on path ensemble averaging. Furthermore, these techniques do not apply to perturbations that affect the diffusion tensor in a stochastic system. Here, we introduce an “effective” physical process that represents the diffusion perturbed dynamics and enables accurate calculations of responses to a change in the diffusion. Interestingly, the effective dynamics contain an additional drift involving the instantaneous “score” of the system, and we leverage score matching algorithms to carry out nonequilibrium response calculations on systems for which the exact stationary distribution is unknown.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

Correlated Response of Protein Side-Chain Fluctuations and Conformational Entropy to Ligand Binding

The heterogeneous fast side-chain dynamics of proteins plays crucial roles in molecular recognition and binding. Site-specific NMR experiments quantify these motions by measuring the model-free order parameter (O axis 2 ) on a scale of 0 (most flexible) to 1 (least flexible) for each methyl-containing residue of proteins. In this work, we have examined ligand-induced variations in the fast side-chain dynamics and conformational entropy of calmodulin (CaM) using five different CaM–peptide complexes. O axis 2 of CaM in the ligand-free (O axis,U 2 ) and ligand-bound (O axis,B 2 ) states are calculated from molecular dynamics trajectories and conformational energy surfaces obtained using the adaptive biasing force (ABF) method. ΔO axis 2 = O axis,B 2 – O axis,U 2 follows a Gaussian-like unimodal distribution whose second moment is a potential indicator of the binding affinity of these complexes. The probability for the binding-induced O axis,U 2 → O axis,B 2 transition decreases with increasing magnitude of ΔO axis 2 , indicating that large flexibility changes are improbable for side chains of CaM after ligand binding. A linear correlation established between ΔOaxis2 and the conformational entropy change of the protein makes possible the determination of the conformational entropy of binding of protein–ligand complexes. The results not only underscore the functional importance of fast side-chain fluctuations but also highlight key motional and thermodynamic correlates of protein–ligand binding.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
NASA NTRS1977

Microphysical response of cloud droplets in a fluctuating updraft

The effect of a fluctuating updraft upon a distribution of cloud droplets is examined. Computations are performed for fourteen vertical velocity patterns; each allows a closed parcel of cloud air to undergo downward as well as upward motion. Droplet solution and curvature effects are included. The classical equations for the growth rate of an individual droplet by vapor condensation relies on simplifying assumptions. Those assumptions are isolated and examined. A unique approach is presented in which all energy sources and sinks of a droplet may be considered and is termed the explicit model. It is speculated that the explicit model may enhance the growth of large droplets at greater heights. Such a model is beneficial to the studies of pollution scavenging and acid rain.

Harding, D. D.↗
NASA NTRS2007

Nanorod-Based Fast-Response Pressure-Sensitive Paints

A proposed program of research and development would be devoted to exploitation of nanomaterials in pressuresensitive paints (PSPs), which are used on wind-tunnel models for mapping surface pressures associated with flow fields. Heretofore, some success has been achieved in measuring steady-state pressures by use of PSPs, but success in measuring temporally varying pressures has been elusive because of the inherent slowness of the optical responses of these materials. A PSP contains a dye that luminesces in a suitable wavelength range in response to photoexcitation in a shorter wavelength range. The luminescence is quenched by oxygen at a rate proportional to the partial pressure of oxygen and thus proportional to the pressure of air. As a result, the intensity of luminescence varies inversely with the pressure of air. The major problem in developing a PSP that could be easily applied to a wind-tunnel model and could be useful for measuring rapidly varying pressure is to provide very high gas diffusivity for rapid, easy transport of oxygen to and from active dye molecules. Most PSPs include polymer-base binders, which limit the penetration of oxygen to dye molecules, thereby reducing responses to pressure fluctuations. The proposed incorporation of nanomaterials (somewhat more specifically, nanorods) would result in paints having nanostructured surfaces that, relative to conventional PSP surfaces, would afford easier and more nearly complete access of oxygen molecules to dye molecules. One measure of greater access is effective surface area: For a typical PSP as proposed applied to a given solid surface, the nanometer-scale structural features would result in an exposed surface area more than 100 times that of a conventional PSP, and the mass of proposed PSP needed to cover the surface would be less than tenth of the mass of the conventional PSP. One aspect of the proposed development would be to synthesize nanorods of Si/SiO2, in both tangle-mat and regular- array forms, by use of chemical vapor deposition (CVD) and wet chemical processes, respectively. The rods would be coated with a PSP dye, and the resulting PSP signals would be compared with those obtained from PSP dye coats on conventional support materials. Another aspect of the proposed development would be to seek to exploit the quantum properties of nanorods of a suitable semiconductor (possibly GaN), which would be synthesized by CVD. These quantum properties of semiconductor nanorods include narrow-wavelength-band optical absorption and emission characteristics that vary with temperature. The temperature sensitivity might enable simultaneous measurement of fluctuating temperature and pressure and to provide a temperature correction for the PSP response.

Bencic, Timothy↗
NASA NTRS1973

Response of panels to turbulence-induced, surface-pressure fluctuations and resulting acoustic radiation to the flow field.

The response of finite rectangular panels, excited by turbulent boundary layers and the resulting acoustical radiation into the flow field is studied. The method of normal modes and the technique of spectral analysis are used to compute the power spectra of the panel amplitude and strain response. Computed results are compared with the corresponding response measurements for panels exposed to attached and separated flows at supersonic speeds and attached flow at subsonic speeds. The thin plate and the convected wave equations are coupled through the boundary condition on the panel to give a formula for the radiation pressure power spectra. A formula for the acoustical damping ratio of the panel is obtained through the principle of virtual work.-

Chyu, W. J.↗
DOE OSTI2021

Upgrades to the ion cyclotron emission diagnostic on the DIII-D tokamak

The ion cyclotron emission diagnostic on the DIII-D tokamak comprises seven single-turn loops that measure high-frequency (1–100 MHz) magnetic field fluctuations that are often excited by energetic particles in the plasma. The raw voltage signals induced in the loops in response to these fluctuations travel through a series of cables, isolation transformer DC blocks, low-pass filters, and finally a digitizer before being analyzed in frequency space. The diagnostic has been recently upgraded, most notably to include four additional graphite tile loops and a new eight-channel digitizer. The previous three loops are all on the low-field side of the tokamak. The measurement capabilities of the system have been expanded by the addition of a new horizontally oriented loop on the low-field side, an additional toroidal loop on the low-field side, and two toroidal loops on the high-field side. These loops will be used to provide approximate mode polarization, improved toroidal mode number calculations, and information on modes in inward-shifted plasmas, respectively.

47 OTHER INSTRUMENTATION↗
DOE OSTI2021

Positive- and negative-frequency noise from an ensemble of two-level fluctuators

The analysis of charge noise based on the Bloch-Redfield treatment of an ensemble of dissipative two-level fluctuators generally results in a violation of the fluctuation-dissipation theorem. The standard Markov approximation (when applied to the two-level fluctuators coupled to a bath) can be identified as the main origin of this failure. The resulting decoherence rates only involve the bath response at the fluctuator frequency, and thus completely neglect the effects of frequency broadening. A systematic and computationally convenient way to overcome this issue is to employ the spectator-qubit method: by coupling an auxiliary qubit to the two-level fluctuator ensemble, an analytical approximation for S(ω) fully consistent with the fluctuation-dissipation theorem can be obtained. We discuss the resulting characteristics of the noise which exhibits distinct behavior over several frequency ranges, including a 1/f to 1/f2 crossover with a T3 temperature dependence of the crossover frequency.

2-dimensional systems↗
NASA NTRS1974

Transonic buffet behavior of Northrop F-5A aircraft

Flight tests were performed on an F-5A aircraft to investigate the dynamic buffet pressure distribution on the wing surfaces and the responses during a series of transonic maneuvers called wind-up turns. The conditions under which the tests were conducted are defined. The fluctuating buffet pressure data on the right wing of the aircraft were acquired by miniaturized semiconductor-type pressure transducers flush mounted on the wing. Processing of the fluctuating pressures and responses included the generation of the auto- and cross-power spectra, and of the spatial correlation functions. An analytical correlation procedure was introduced to compute the aircraft response spectra based on the measured buffet pressures.

Hwang, C.↗
NASA NTRS1975

Pulsar fluctuation spectra and the generalized drifting-subpulse phenomenon. II

Pulsar observations at meter wavelengths have been analyzed to investigate pulse-to-pulse variations and to identify regions of the pulse profile which display distinct statistical properties. Fluctuation spectra of eight recently discovered pulsars are presented along with a description of the drifting-subpulse phenomenon in several objects with quasiperiodic responses in their fluctuation spectra. A quantitative analysis of the drifting-subpulse phenomenon in PSR 0031-07 and PSR 0809+74 is given which emphasizes the broad-band nature of the phenomenon. A summary of the memory exhibited by pulsars with time scales of about 50 periods is given.

Backer, D. C.↗
NASA NTRS1976

A complete second-order theory for the unsteady flow about an airfoil due to a periodic gust

A uniformly valid second-order theory is developed for calculating the unsteady incompressible flow that occurs when an airfoil is subjected to a convected sinusoidal gust. Explicit formulas for the airfoil response functions (i.e., fluctuating lift) are given. The theory accounts for the effect of the distortion of the gust by the steady-state potential flow around the airfoil, and this effect is found to have an important influence on the response functions. A number of results relevant to the general theory of the scattering of vorticity waves by solid objects are also presented.

Goldstein, M. E.↗
NASA NTRS2006

Water as a matrix for life

"Follow the water" is the canonical strategy in searching for life in the universe. Conventionally, discussion of this topic is focused on how solvent supports organic chemistry sufficiently rich to seed life. Perhaps more importantly, solvent must promote self-organization of organic matter into functional structures capable of responding to environmental changes. This process is based on non-covalent interactions. They are constantly formed and broken in response to internal and external stimuli. This requires that their strength must be properly tuned. If they were too weak, the system would exhibit undesired, uncontrolled response to natural fluctuations of physical and chemical parameters. If they were too strong kinetics of biological processes would be slow and energetics costly. Non-covalent interactions are strongly mediated by the solvent. Specifically, high dielectric solvents for life are needed for solubility of polar species and flexibility of biological structures stabilized by electrostatic interactions. Water exhibits a remarkable trait that it promotes solvophobic interactions between non-polar species, which are responsible for self-organization phenomena such as the formation of cellular boundary structures, and protein folding and aggregation. Unusual temperature dependence of hydrophobic interactions - they often become stronger as temperature increases - is a consequence of the temperature insensitivity of properties of the liquid water. This contributes to the existence of robust life over a wide temperature range. Water is not the only liquid with favorable properties for supporting life. Other pure liquids or their mixtures that have high dielectric constants and simultaneously support some level of self-organization will be discussed.

Pohorille, Andrew↗
NASA NTRS1985

Estimation of particle size based on LDV measurements in a de-accelerating flow field

The accuracy of velocity measurements made with a laser velocimeter is strongly dependent upon the response of the seeding particles to the dynamics of the flow field. The smaller the particle the better the response to flow fluctuations and gradients and therefore the more accurate velocity measurement. In direct conflict is the requirement of light scattering efficiency to obtain signals with the laser velocimeter which, in general, is better as the particle size is increased. In low speed flow fields these two requirements on particle size overlap and accurate measurements may be obtained. However in high speed flows, where the velocity gradients may be severe, very small particles are required to maintain sufficient dynamic response characteristics to follow the flow. Therefore if velocity measurements are to be made in these flows, the laser velocimeter must be designed with sufficient sensitivity to obtain signals from these small particles. An insitu determination of the size distribution of kaolin particles (Al2O3, .2 + or - SiO2 . 2H2O) in the 16-foot Transonic Tunnel and the sensitivity characteristics of the laser velocimeter system is described.

Meyers, J. F.↗