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At least 91 records · Page 5

Removing Numerical Pathologies in a Turbulence Parameterization Through Convergence Testing

Abstract Discretized numerical models of the atmosphere are usually intended to faithfully represent an underlying set of continuous equations, but this necessary condition is violated sometimes by subtle pathologies that have crept into the discretized equations. Such pathologies can introduce undesirable artifacts, such as sawtooth noise, into the model solutions. The presence of these pathologies can be detected by numerical convergence testing. This study employs convergence testing to verify the discretization of the Cloud Layers Unified By Binormals (CLUBB) model of clouds and turbulence. That convergence testing identifies two aspects of CLUBB's equation set that contribute to undesirable noise in the solutions. First, numerical limiters (i.e., clipping) used by CLUBB introduce discontinuities or slope discontinuities in model fields. Second, nonlinear artificial diffusion employed for improving numerical stability can introduce unintended small‐scale features into the solution of the model equations. Smoothing the limiters and using linear artificial diffusion reduces the noise and restores the expected first‐order convergence in CLUBB's solutions. These model reformulations enhance our confidence in the trustworthiness of solutions from CLUBB by eliminating the unphysical oscillations in high‐resolution simulations. The improvements in the results at coarser, near‐operational grid spacing and timestep are also seen in cumulus cloud and dry turbulence tests. In addition, convergence testing is proven to be a valuable tool for detecting pathologies, including unintended discontinuities and grid dependence, in the model equation set.

58 GEOSCIENCES↗

A group finder algorithm optimised for the study of local galaxy environments

Context. The majority of galaxy group catalogues available in the literature use the popular friends-of-friends algorithm which links galaxies using a linking length. One potential drawback to this approach is that clusters of points can be linked with thin bridges which may not be desirable. In order to study galaxy groups, it is important to obtain realistic group structures. Aim. Here, in this study, we present a new simple group finder algorithm, TD-ENCLOSER, that finds the group that encloses a target galaxy of interest. Methods. TD-ENCLOSER is based on the kernel density estimation method which treats each galaxy, represented by a zero-dimensional particle, as a two-dimensional circular Gaussian. The algorithm assigns galaxies to peaks in the density field in order of density in descending order (‘top down’) so that galaxy groups ‘grow’ around the density peaks. Outliers in under-dense regions are prevented from joining groups by a specified hard threshold, while outliers at the group edges are clipped below a soft (blurred) interior density level. Results. The group assignments are largely insensitive to all free parameter variations apart from the hard density threshold and the kernel standard deviation, although this is a known feature of density-based group finder algorithms and it operates with a computing speed that increases linearly with the size of the input sample. In preparation for a companion paper, we also present a simple algorithm to select unique representative groups when duplicates occur. Conclusions. TD-ENCLOSER is tested on a mock galaxy catalogue using a smoothing scale of 0.3 Mpc and is found to be able to recover the input group distribution with sufficient accuracy to be applied to observed galaxy distributions.

79 ASTRONOMY AND ASTROPHYSICS↗

Variational actor-critic algorithms,

We introduce a class of variational actor-critic algorithms based on a variational formulation over both the value function and the policy. The objective function of the variational formulation consists of two parts: one for maximizing the value function and the other for minimizing the Bellman residual. Besides the vanilla gradient descent with both the value function and the policy updates, we propose two variants, the clipping method and the flipping method, in order to speed up the convergence. We also prove that, when the prefactor of the Bellman residual is sufficiently large, the fixed point of the algorithm is close to the optimal policy.

97 MATHEMATICS AND COMPUTING↗

The FRIB Decay Station: New Horizons with Rare Isotopes

In May 2022, the Facility for Rare Isotope Beams (FRIB), located on the campus of Michigan State University (MSU), began delivering exotic isotopes to an international community of scientists. New discoveries are now being reported from radioactive decay of neutron-rich nuclei near N = 20 and N = 28.FRIB is expected to produce roughly 80% of the unstable or radioactive isotopes predicted to exist up to uranium (Z = 92). The new user facility is supported by the U.S. Department of Energy, and it is operated by MSU. A high-power superconducting linear accelerator, shaped like a paper-clip, drives the production of these rare isotopes by colliding stable nuclei moving at half the speed of light with a rotating, water-cooled graphite tar-get. These collisions cause the primary stable beam to fragment into a wide variety of unstable nuclei, which can be subsequently filtered through a multistage magnetic separator, the Advanced Rare Isotope Separator, and transported to one of several experimental stations. The FRIB Decay Station initiator (FDSi) (see Figure 1) was developed to enable comprehensive radio-active decay studies of the exotic nuclei produced by FRIB and it was used in the first two experiments in 2022. Further, the FDSi is a highly reconfigurable multidetector system with two focal planes (FP1 for discrete spectroscopy and FP2 for total absorption spectroscopy) that can be optimized for the specific science goals of each experiment. It is designed, built, and operated by a community of users with the sup-port of U.S. funding agencies, including the Department of Energy and National Science Foundation.

07 ISOTOPE AND RADIATION SOURCES↗

Unique contributions of chlorophyll and nitrogen to predict crop photosynthetic capacity from leaf spectroscopy

The photosynthetic capacity or the CO 2 -saturated photosynthetic rate (Vmax), chlorophyll, and nitrogen are closely linked leaf traits that determine C 4 crop photosynthesis and yield. Accurate, timely, rapid, and non-destructive approaches to predict leaf photosynthetic traits from hyperspectral reflectance are urgently needed for high-throughput crop monitoring to ensure food and bioenergy security. Therefore, this study thoroughly evaluated the state-of-the-art physically based radiative transfer models (RTMs), data-driven partial least squares regression (PLSR), and generalized PLSR (gPLSR) models to estimate leaf traits from leaf-clip hyperspectral reflectance, which was collected from maize (Zea mays L.) bioenergy plots with diverse genotypes, growth stages, treatments with nitrogen fertilizers, and ozone stresses in three growing seasons. The results show that leaf RTMs considering bidirectional effects can give accurate estimates of chlorophyll content (Pearson correlation r=0.95), while gPLSR enabled retrieval of leaf nitrogen concentration (r=0.85). Using PLSR with field measurements for training, the cross-validation indicates that V max can be well predicted from spectra (r=0.81). Here, the integration of chlorophyll content (strongly related to visible spectra) and nitrogen concentration (linked to shortwave infrared signals) can provide better predictions of V max (r=0.71) than only using either chlorophyll or nitrogen individually. This study highlights that leaf chlorophyll content and nitrogen concentration have key and unique contributions to V max prediction.

59 BASIC BIOLOGICAL SCIENCES↗

SDSS-IV MaNGA: a catalogue of spectroscopically detected strong galaxy–galaxy lens candidates

ABSTRACT We spectroscopically detected candidate emission-lines of 8 likely, 17 probable, and 69 possible strong galaxy–galaxy gravitational lens candidates found within the spectra of $\approx 10\, 000$ galaxy targets contained within the completed Mapping of Nearby Galaxies at Apache Point Observatory survey. This search is based upon the methodology of the Spectroscopic Identification of Lensing Objects project, which extends the spectroscopic detection methods of the BOSS Emission-Line Lensing Survey and the Sloan Lens ACS Survey. We scanned the co-added residuals that we constructed from stacks of foreground subtracted row-stacked-spectra so a sigma-clipping method can be used to reject cosmic rays and other forms of transients that impact only a small fraction of the combined exposures. We also constructed narrow-band images from the signal to noise of the co-added residuals to observe signs of lensed source images. We also use several methods to compute the probable strong lensing regime for each candidate lens to determine which candidate background galaxies may reside sufficiently near the galaxy centre for strong lensing to occur. We present the spectroscopic redshifts within a value-added catalogue (VAC) for data release 17 (DR17) of SDSS-IV. We also present the lens candidates, spectroscopic data, and narrow-band images within a VAC for DR17. High resolution follow-up imaging of these lens candidates are expected to yield a sample of confirmed grade-A lenses with sufficient angular size to probe possible discrepancies between the mass derived from a best-fitting lens model, and the dynamical mass derived from the observed stellar velocities.

79 ASTRONOMY AND ASTROPHYSICS↗

Accuracy and capacity of modern Hopfield networks with synaptic noise.

We study the retrieval accuracy and capacity of modern Hopfield networks of with two-state (Ising) spins interacting via modified Hebbian 𝑛 -spin interactions. In particular, we consider systems where the interactions deviate from the Hebb rule through additive or multiplicative noise or through clipping or deleting interactions. We find that the capacity scales as 𝑁𝑛−1 with the number of spins 𝑁 in all cases, but with a prefactor reduced compared to the Hebbian case. For 𝑛=2 our results agree with the previously known results for the conventional 𝑛=2 Hopfield network.

Bhattacharjee, Sharba↗

VitroJet: new features and case studies

Single-particle cryo-electron microscopy has become a widely adopted method in structural biology due to many recent technological advances in microscopes, detectors and image processing. Before being able to inspect a biological sample in an electron microscope, it needs to be deposited in a thin layer on a grid and rapidly frozen. The VitroJet was designed with this aim, as well as avoiding the delicate manual handling and transfer steps that occur during the conventional grid-preparation process. Since its creation, numerous technical developments have resulted in a device that is now widely utilized in multiple laboratories worldwide. It features plasma treatment, low-volume sample deposition through pin printing, optical ice-thickness measurement and cryofixation of pre-clipped Autogrids through jet vitrification. This paper presents recent technical improvements to the VitroJet and the benefits that it brings to the cryo-EM workflow. A wide variety of applications are shown: membrane proteins, nucleosomes, fatty-acid synthase, Tobacco mosaic virus, lipid nanoparticles, tick-borne encephalitis viruses and bacteriophages. These case studies illustrate the advancement of the VitroJet into an instrument that enables accurate control and reproducibility, demonstrating its suitability for time-efficient cryo-EM structure determination.

59 BASIC BIOLOGICAL SCIENCES↗

Filtered Multi-Tone Spread Spectrum With Overlapping Subbands

A new form of the filter bank multi-carrier spread spectrum (FBMC-SS) waveform is presented. This new waveform modifies the filtered multi-tone spread spectrum (FMT-SS) system, and is intended to whiten the power spectral density (PSD) of the transmit signal. In the conventional FMT-SS, subcarrier bands are non-overlapping, leaving a spectral null between the adjacent subcarrier bands. To make FMT-SS more appealing for a broader set of applications than those studied in the past, we propose adding additional subcarriers centered at these nulls and thoroughly explore the impact of the added subcarriers on the system performance. This modified form of FMT-SS is referred to as overlapped FMT-SS (OFMT-SS). We explore the conditions required for maximally flattening the PSD of the synthesized OFMT-SS signal and for cancelling the interference caused by overlapping subbands. We also explore the choices of spreading gains that result in a low peak-to-average power ratio (PAPR) for a number of different scenarios. Further reduction of the PAPR of the synthesized signal through clipping methods is also explored. Additionally, we propose methods of multi-coding for increasing the data rate of the OFMT-SS waveform, while minimally impacting its PAPR.

42 - ENGINEERING↗

A Reproducible Validation of Algorithms for Estimating Array Tilt and Azimuth from Photovoltaic Power Time Series

In this research, we assess the viability of four different, publicly available algorithms for estimating the azimuth and tilt parameters of solar photovoltaic systems using only the associated AC power time series data and site latitude-longitude coordinates. In this work, we curated a benchmarking data set of 44 fixed-tilt systems, comprising 275 measured AC power inverter data streams, with known azimuth and tilt parameters. Additionally, we isolated test cases in the data set with real- world issues, including shading and clipping, to determine how algorithm performance varies based on the presence of these phenomena. Using this data set for benchmarking, we evaluated the estimated vs. actual system characteristics for each algorithm, as well as the associated algorithm execution time using a standardized benchmarking process. The two highest performing algorithms were the Solar Data Tools and the PVWatts 5- based methods, which both achieved a median absolute error of approximately 5 and 1 degrees for azimuth and tilt, respectively. During run time analysis, the SDT method was approximately 5 times faster than the PVWatts 5-based method, with the median execution time for a stream varying between 6 and 8 seconds vs. a median run time of 31 seconds for the PVWatts 5-based method.

azimuth↗

Deep Reinforcement Learning From Demonstrations to Assist Service Restoration in Islanded Microgrids

Microgrids can be operated in island mode during utility grid outages to support service restoration and improve system resilience. To schedule and dispatch distributed energy resources (DERs) in an islanded microgrid, conventional model-based methods rely on accurate distribution network models and lack generalization and adaptability. Data-driven methods are promising for DER coordination but face practical challenges such as potential hazards to microgrids during online training and insufficient online training opportunities due to low outage rates. This paper presents a novel two-stage learning framework that builds on the deep deterministic policy gradient from demonstrations to identify an optimal restoration strategy. At the pre-training stage, imitation learning is applied to equip the control agent with expert experiences to guarantee acceptable initial performance. At the online training stage, action clipping, reward shaping, and expert demonstrations are leveraged to ensure safe exploration while accelerating the training process. In conclusion, the proposed method is illustrated using the IEEE 123-node system and compared with a representative model-based method and the standard deep deterministic policy gradient method to prove solution accuracy and demonstrate increased computational efficiency.

Du, Yan↗

Metabolic engineering of p –hydroxybenzoate in poplar lignin

Ester-linked p-hydroxybenzoate occurs naturally in poplar lignin as pendent groups that can be released by mild alkaline hydrolysis. These ‘clip-off’ phenolics can be separated from biomass and upgraded into diverse high-value bioproducts. We introduced a bacterial chorismate pyruvate lyase gene into transgenic poplar trees with the aim of producing more p-hydroxybenzoate from chorismate, itself a metabolic precursor to lignin. By driving heterologous expression specifically in the plastids of cells undergoing secondary wall formation, this strategy achieved a 50% increase in cell-wall-bound p-hydroxybenzoate in mature wood and nearly 10 times more in developing xylem relative to control trees. Comparable amounts also remained as soluble p-hydroxybenzoate-containing xylem metabolites, pointing to even greater engineering potential. Mass spectrometry imaging showed that the elevated p-hydroxybenzoylation was largely restricted to the cell walls of fibres. Finally, transgenic lines outperformed control trees in assays of saccharification potential. Here, this study highlights the biotech potential of cell-wall-bound phenolate esters and demonstrates the importance of substrate supply in lignin engineering.

4-hydroxybenzoic acid↗

Hidden diversity: Transcriptomic and photosynthetic variation among common ‘wild type’ Chlamydomonas strains

The unicellular green alga Chlamydomonas reinhardtii is a widely studied reference organism, particularly in photosynthesis research. It employs photoprotective mechanisms, such as state transitions (ST) and non-photochemical quenching (NPQ), to cope with rapid light changes. Most widely used strains share a recent common ancestor yet differ by up to ~50 000 nuclear variants—genetic diversity that is often overlooked. Even among ‘wild type’ strains, we document significant phenotypic differences, such as pigment accumulation, and nutrient utilization. To elucidate the basis for this variation, we compared transcriptomes and physiological traits of seven commonly used laboratory strains, including the reference strain and the CLiP mutant library parental strain. Despite identical growth conditions, ~40% of genes were differentially expressed between strains. Most of these differences are attributable to changes that have accrued during laboratory propagation, and adverse conditions may have driven transcriptomic drift. At the physiological level, we catalog the range of strain-dependent responses related to photosynthesis and high light (HL) acclimation. Specifically, (i) all strains develop NPQ upon HL exposure, but to various degrees, (ii) they show a substantial variation in ST capacity, and (iii) they regulate the composition of the photosynthetic apparatus differently. We find that NPQ levels do not correlate with LHCSR3 expression, suggesting an additional layer of NPQ regulation. STs are constantly activated and independent of growth light intensities. Overall, our findings highlight significant strain-to-strain differences in virtually all photosynthetic parameters, emphasizing the importance of careful strain selection in future research endeavors.

59 BASIC BIOLOGICAL SCIENCES↗

On the EFT validity for Drell–Yan tails at the LHC

Abstract In this article, we examine the validity range of the Effective Field Theory (EFT) description of high-energy Drell–Yan processes at the LHC. To this purpose, we consider explicit mediators that contribute to these processes in the s - and t -channels, comparing their effects in Drell–Yan distributions with the ones obtained by matching onto the corresponding EFT. We determine the conditions for the EFT results to accurately describe these scenarios. In particular, we explore the impact of including dimension-eight $$(d=8)$$ ( d = 8 ) operators in the faster convergence of the EFT series, at the analytical and numerical level, considering contributions to the cross section up to the square of $$d=8$$ d = 8 EFT operator insertions. Moreover, we discuss the possible implications of clipping LHC data and illustrate results for a specific New-Physics scenario motivated by low-energy flavor data.

Allwicher, L. (ORCID:0000000269561661)↗

Performance and Durability of Hybrid Fuel Cell Systems for Class-8 Long Haul Trucks

Hybrid fuel cell-battery configurations are investigated that overcome thermal management issues in fuel cell powertrains for heavy-duty Class 8 trucks. The battery is sized so that it has sufficient capacity to provide supplemental power and energy on a hill climb transient at end-of-life. A dynamic load sharing strategy is developed to distribute the power demand between the fuel cell system (FCS) and the energy storage system in a manner that optimizes their lifetimes. The FCS end-of-life is identified as the terminal point beyond which the stack cannot generate the rated power with target power density at 0.7 V and 40 °C ambient temperature. Reaching the target lifetime with a-Pt/C cathode catalyst in one hybrid configuration requires voltage clipping to 813 mV, idle power limited to 50 kW, catalyst overloading to 0.45 mg cm -2 total Pt in anode and cathode, and 44% active membrane area oversizing. The stack and FCS drive cycle efficiencies decrease by 4.2% and 5.4%, respectively, during the electrode lifetime. Further, the FCS performance, durability and cost are compared with the targets of 68% peak efficiency, 0.30 mg cm -2 total Pt loading, 2.5 kW/g PGM Pt group metal (PGM) loading, 750 mW cm -2 power density, 25,000-h lifetime and $80/kW cost.

33 ADVANCED PROPULSION SYSTEMS↗

Performance and Durability of Heavy-Duty Fuel Cell Systems with an Advanced Ordered Intermetallic ORR Alloy Catalyst and Novel Support

Ordered PtCo intermetallic (OIM) catalyst (L1 0 -PtCo/C) is a promising candidate as the oxygen reduction reaction (ORR) catalyst in hybrid fuel cell systems (FCS) for class-8 heavy duty (HD) trucks. Compared to a baseline annealed Pt on high surface area carbon (a-Pt/HSC) catalyst, its mass activity (MA) is 71% higher initially and 144% higher after 90,000 potential cycles in an accelerated stress test (AST). Analysis of the AST data indicates that the ORR kinetic constants do not change with aging and the degradation in the OIM catalyst activity is linearly proportional to the loss in the electrochemically active surface area (ECSA). Several operational strategies are investigated to mitigate catalyst degradation and achieve 25,000-h electrode lifetime and 2.5 kW g −1 Pt utilization on a HD truck duty cycle including load sharing with the hybrid battery, regulating the radiator fan power to maintain the coolant temperature close to 60 °C, clipping the maximum cell voltage below 850 mV, limiting the ECSA loss to 55%, and oversizing the active area of the membrane electrode assemblies by 20%. Drive cycle simulations indicate that the lifetime average voltage degradation rate is about 1.8 μV h −1 and the integrated stack and FCS drive cycle efficiencies decrease by 3.5 to 3.9%.

25 ENERGY STORAGE↗

divergence in basal transcriptomes of "Wild Type" Chlamydomonas reinhardtii strains

This is a study to compare the basal transcriptomes of several widely used laboratory strains of the Chlorophyte alga, Chlamydomonas reinhardtii. Given that there is a high degree of genetic diversity among the closely-related laboratory strains, we wished to examine how much variation there is at the transcriptome level. A panel of WT strains (CC-124, CC-125, CC-1009, CC-1690, CC-1691), all believed to be descended from a single zygospore isolated in 1945, were chosen based on their representing the oldest lineages among the standard laboratory strains. Additionally, CC-4532, which was the source for the current (v6) reference assembly, and CC-4533, which is the initial parental strain of the CLiP library collection of mutant strains, were also included in this study based on their significance to the Chlamydomonas community. All strains were grown in liquid cultures under identical, mixotrophic conditions (light + acetate) to mid-log phase before collecting mRNA for RNA-Seq analysis. Overall design: Pre-cultures of each strain (CC-124, CC-125, CC-1009, CC-1690, CC-1691, CC-4532, and CC-4533) were used to innoculate flasks of Tris-Acetate-Phosphate (TAP) media supplemented with Kropat's trace metals at a concentration of 1.5 x 10^4 cells/mL. Flasks were placed on a shaking platform at 180 RPM under 50-70 µmol x m^-2 x s^-1 of light. Cultures were grown until they reached ~2-3 x 10^6 cells/mL, about three days, before total RNA was collected and subjected RNA-Seq analysis.

Source record↗

polyclip

Multi-material cell clipping on GPUs.

Walsmith, Melanie Cassidy↗