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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Reimagining Disassembly Interfaces With Visualization: Combining Instruction Tracing and Control Flow With DisViz

In applications where efficiency is critical, developers may examine their compiled binaries, seeking to understand how the compiler transformed their source code and what performance implications that transformation may have. This analysis is challenging due to the vast number of disassembled binary instructions and the many-to-many mappings between them and the source code. These problems are exacerbated as source code size increases, giving the compiler more freedom to map and disperse binary instructions across the disassembly space. Interfaces for disassembly typically display instructions as an unstructured listing or sacrifice the order of execution. Here, we design a new visual interface for disassembly code that combines execution order with control flow structure, enabling analysts to both trace through code and identify familiar aspects of the computation. Central to our approach is a novel layout of instructions grouped into basic blocks that displays a looping structure in an intuitive way. We add to this disassembly representation a unique block-based mini-map that leverages our layout and shows context across thousands of disassembly instructions. Finally, we embed our disassembly visualization in a web-based tool, DisViz, which adds dynamic linking with source code across the entire application. DizViz was developed in collaboration with program analysis experts following design study methodology and was validated through evaluation sessions with ten participants from four institutions. Participants successfully completed the evaluation tasks, hypothesized about compiler optimizations, and noted the utility of our new disassembly view. Our evaluation suggests that our new integrated view helps application developers in understanding and navigating disassembly code.

Computer science↗
DOE OSTI2020

SpotSDC: Revealing the Silent Data Corruption Propagation in High-Performance Computing Systems

We report the trend of rapid technology scaling is expected to make the hardware of high-performance computing (HPC) systems more susceptible to computational errors due to random bit flips. Some bit flips may cause a program to crash or have a minimal effect on the output, but others may lead to silent data corruption (SDC), i.e., undetected yet significant output errors. Classical fault injection analysis methods employ uniform sampling of random bit flips during program execution to derive a statistical resiliency profile. However, summarizing such fault injection result with sufficient detail is difficult, and understanding the behavior of the fault-corrupted program is still a challenge. In this article, we introduce SpotSDC, a visualization system to facilitate the analysis of a program's resilience to SDC. SpotSDC provides multiple perspectives at various levels of detail of the impact on the output relative to where in the source code the flipped bit occurs, which bit is flipped, and when during the execution it happens. SpotSDC also enables users to study the code protection and provide new insights to understand the behavior of a fault-injected program. Based on lessons learned, we demonstrate how what we found can improve the fault injection campaign method.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

l3d2vtk: An MCNPTools Utility to Enable LNK3DNT File Visualization & Post-Processing

This paper describes recent work to develop and incorporate a utility program into the MCNPTools package that enables LNK3DNT file visualization & post-processing. A LNK3DNT file is a binary Cartesian, cylindrical, or spherical structured mesh file that describes material and material relative density distributions by mesh voxel. This mesh file format is principally used by the PARTISN discrete-ordinates radiation-transport code. However, the MCNP ® Monte Carlo radiation-transport code can use LNK3DNT files to specify geometry, and the MCNP code can produce LNK3DNT files representing a user-defined region of the MCNP constructive solid geometry (CSG). Because of the use of LNK3DNT files as MCNP input and output and with other computer codes, improving the ability to visualize and/or quantitatively post-process LNK3DNT files benefits end users. In particular, it is helpful to visually verify that the material and density distributions are as expected. Also, an analyst can orient viewers with respect to other in formation, e.g., by co-plotting a voxelized representation of MCNP CSG with mesh tally and/or particle track results. However, until now, the only capability to interactively interrogate LNK3DNT files is through a 2-D slice plotter provided by the Monte Carlo Application ToolKit (MCATK), which is not currently distributed outside of Los Alamos National Laboratory. The utility created as part of this work converts LNK3DNT binary files to an ASCII XML-based StructuredMesh VTK (.vts) file. The geometries supported are 1-D spherical and cylindrical ( r ), 1-D Cartesian ( x ), 2-D cylindrical ( r-z and r-θ ) and Cartesian ( x-y ), and 3-D cylindrical ( r-z-θ ) and Cartesian ( x-y-z ). This file format is chosen to minimize external dependencies (e.g., on an HDF5 library) and to provide a file that can be interrogated by the user in a text editor or standard visualization applications (e.g., ParaView or VisIt). However, other file formats may provide more utility such as XDMF, which can use HDF5 and is discussed further as something to explore as future work. This paper is organized as follows: a brief introduc tion to the MCNPTools library and utility programs is given, the LNK3DNT-to-VTK (l3d2vtk) utility functionality is de scribed, and then an example post-processing workflow using the ParaView application is given.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

Jas4pp — A data-analysis framework for physics and detector studies

This paper describes the Jas4pp framework for exploring physics cases and for detector-performance studies of future particle collision experiments. Jas4pp is a multi-platform Java program for numeric calculations, scientific visualization in 2D and 3D, storing data in various file formats and displaying collision events and detector geometries. It also includes complex data-analysis algorithms for function minimization, regression analysis, event reconstruction (such as jet reconstruction), limit settings and other libraries widely used in particle physics. The framework can be used with several scripting languages, such as Python/Jython, Groovy and JShell. Several benchmark tests discussed in the paper illustrate significant improvements in the performance of the Groovy and JShell scripting languages compared to the standard Python implementation in C. Furthermore, the improvements for numeric computations in Java are attributed to recent enhancements in the Java Virtual Machine.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

Microbiome breeding: conceptual and practical issues

Microbiome breeding is a new artificial selection technique that seeks to change the genetic composition of microbiomes in order to benefit plant or animal hosts. Recent experimental and theoretical analyses have shown that microbiome breeding is possible whenever microbiome-encoded genetic factors affect host traits (e.g., health) and microbiomes are transmissible between hosts with sufficient fidelity, such as during natural microbiome transmission between individuals of social animals, or during experimental microbiome transplanting between plants. Further, to address misunderstandings that stymie microbiome-breeding programs, we (i) clarify and visualize the corresponding elements of microbiome selection and standard selection; (ii) elucidate the eco-evolutionary processes underlying microbiome selection within a quantitative genetic framework to summarize practical guidelines that optimize microbiome breeding; and (iii) characterize the kinds of host species most amenable to microbiome breeding.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2020

Survey of Gravitationally lensed Objects in HSC Imaging (SuGOHI) – V. Group-to-cluster scale lens search from the HSC–SSP Survey

ABSTRACT We report the largest sample of candidate strong gravitational lenses belonging to the Survey of Gravitationally lensed Objects in HSC Imaging for group-to-cluster scale (SuGOHI-c) systems. These candidates are compiled from the S18A data release of the Hyper Suprime-Cam Subaru Strategic Program (HSC–SSP) Survey. We visually inspect ∼39 500 galaxy clusters, selected from several catalogues, overlapping with the Wide, Deep, and UltraDeep fields, spanning the cluster redshift range of 0.05 < zcl < 1.38. We discover 641 candidate lens systems, of which 536 are new. From the full sample, 47 are almost certainly bona fide lenses, 181 of them are highly probable lenses, and 413 are possible lens systems. Additionally, we present 131 lens candidates at galaxy scale serendipitously discovered during the inspection. We obtained spectroscopic follow-up of 10 candidates using the X-shooter. With this follow-up, we confirm eight systems as strong gravitational lenses. Of the remaining two, one of the sources is too faint to detect any emission, and the other has a tentative redshift close to the lens redshift, but additional arcs in this system are yet to be observed spectroscopically. Since the HSC–SSP is an ongoing survey, we expect to find ∼600 definite or probable lenses using this procedure and even more if combined with other lens finding methods.

Jaelani, Anton T.↗
DOE OSTI2015

SU-E-T-255: Development of a Michigan Quality Assurance (MQA) Database for Clinical Machine Operations

Purpose: A unified database system was developed to allow accumulation, review and analysis of quality assurance (QA) data for measurement, treatment, imaging and simulation equipment in our department. Recording these data in a database allows a unified and structured approach to review and analysis of data gathered using commercial database tools. Methods: A clinical database was developed to track records of quality assurance operations on linear accelerators, a computed tomography (CT) scanner, high dose rate (HDR) afterloader and imaging systems such as on-board imaging (OBI) and Calypso in our department. The database was developed using Microsoft Access database and visual basic for applications (VBA) programming interface. Separate modules were written for accumulation, review and analysis of daily, monthly and annual QA data. All modules were designed to use structured query language (SQL) as the basis of data accumulation and review. The SQL strings are dynamically re-written at run time. The database also features embedded documentation, storage of documents produced during QA activities and the ability to annotate all data within the database. Tests are defined in a set of tables that define test type, specific value, and schedule. Results: Daily, Monthly and Annual QA data has been taken in parallel with established procedures to test MQA. The database has been used to aggregate data across machines to examine the consistency of machine parameters and operations within the clinic for several months. Conclusion: The MQA application has been developed as an interface to a commercially available SQL engine (JET 5.0) and a standard database back-end. The MQA system has been used for several months for routine data collection.. The system is robust, relatively simple to extend and can be migrated to a commercial SQL server.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2019

ASCENDS: Advanced Data SCiENce Toolkit for Non-Data Scientists

Data science capabilities are becoming important more and more. Even though there exist many data science and machine learning tools, they are not intuitive for many traditional scientists who are not familiar with programming. ASCENDS provides easy and intuitive interfaces (command-line interface, graphical user interface) to users so they can use data science capabilities without having to understand programming language. ASCENDS performs data visualization, machine learning model training, storing and prediction (regression problem), automatic hyperparameter tuning, and supports various machine learning models including random forest, kernel ridge, nearest neighbor, neural network, etc. Users can use standard CSV (comma separated values) format data set and investigate the feature columns that are highly correlated to a target column; further, they can learn ML models, then store and use them for predictions. The tool is supposed to be generically applicable so that it can be used for many different applications.

Sangkeun, MattLee↗
DOE OSTI2016

ISTI Overview

The Information Science & Technology Institute (ISTI) enables the execution of LANL’s institutional IS&T pillar through revitalization of technical IS&T areas, recruiting, and retention of IS&T staff. ISTI manages, organizes, and/or provides funding for (1) summer schools, (2) university collaborations, (3) workshops, (4) the IS&T seminar series, (5) program development, and (6) the visualization collaboratory at LARP all with a focus on IS&T.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2024

Value-based Insights from the Implementation of Hierarchical Control for Energy Savings and Demand Response in Residential Premises

As the adoption of distributed energy resources and electric vehicles at residential customer premises increases exponentially, behind-the-meter assets can be utilized to achieve energy cost reduction and demand response through coordination and control strategies. A hierarchical control architecture from the utility headend to residential premises is implemented to attain these objectives. This paper extracts the values from the development, implementation, and deployment of that control hierarchy. The development of the control philosophy is built upon the existing advanced metering infrastructure, communication protocols, and industry-compatible application programming interfaces. Results are presented visually with analytical insights by utilizing the data from hardware-in-the-loop testing and simulation analysis out of the collected data from the field.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2016

Early Experiences Porting the NAMD and VMD Molecular Simulation and Analysis Software to GPU-Accelerated OpenPOWER Platforms, In: ISC High Performance 2016: High Performance Computing

All-atom molecular dynamics simulations of biomolecules provide a powerful tool for exploring the structure and dynamics of large protein complexes within realistic cellular environments. Unfortunately, such simulations are extremely demanding in terms of their computational requirements, and they present many challenges in terms of preparation, simulation methodology, and analysis and visualization of results. We describe our early experiences porting the popular molecular dynamics simulation program NAMD and the simulation preparation, analysis, and visualization tool VMD to GPU-accelerated OpenPOWER hardware platforms. We report our experiences with compiler-provided autovectorization and compare with hand-coded vector intrinsics for the POWER8 CPU. We explore the performance benefits obtained from unique POWER8 architectural features such as 8-way SMT and its value for particular molecular modeling tasks. Finally, we evaluate the performance of several GPU-accelerated molecular modeling kernels and relate them to other hardware platforms.

Computer Science↗
DOE OSTI2016

PHOENIX - Web-Based Application for Accessing Hanford Tank Monitoring Data - 16157

Data volume, complexity, and access issues pose severe challenges for analysts, regulators, and stakeholders interested in evaluating scientific data to support decision making at the Department of Energy's (DOE) Hanford Site. Pacific Northwest National Laboratory (PNNL) has developed a suite of web applications known collectively as PHOENIX (PNNL-Hanford Online Environmental Information exchange) to address data access, transparency, and integration challenges through intuitive query, visualization, and analysis tools that are accessible via desktop computer or mobile device by simply accessing the application web page (http://phoenix.pnnl.gov). Beginning in 2013, DOE's Office of River Protection (ORP) has worked with PNNL to develop a PHOENIX Tank Farm application to provide access to, and visualization of, in-tank monitoring data that had only been available to the public as text downloads for almost two decades. The Tank Farm application's user-friendly web-interface allows the public, stakeholders, regulators, and program managers to quickly and easily visualize in-tank and ex-tank data, facilitating data transparency and high-level decisions related to tank operations and management. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2020

Collaborative Exploration of Scientific Datasets Using Immersive and Statistical Visualization: Preprint

We discuss the value of collaborative, immersive visualization for the exploration of scientific datasets and review techniques and tools that have been developed and deployed at the National Renewable Energy Laboratory (NREL). We believe that collaborative visualizations linking statistical interfaces and graphics on laptops and high-performance computing (HPC) with 3D visualizations on immersive displays (head-mounted displays and large-scale immersive environments) enable scientific workflows that further rapid exploration of large, high-dimensional datasets by teams of analysts. We present a framework, PlottyVR, that blends statistical tools, general-purpose programming environments, and simulation with 3D visualizations. To contextualize this framework, we propose a categorization and loose taxonomy of collaborative visualization and analysis techniques. Finally, we describe how scientists and engineers have adopted this framework to investigate large, complex datasets.

collaborative visualization↗
DOE OSTI2021

Collaborative Exploration of Scientific Datasets Using Immersive and Statistical Visualization

We discuss the value of collaborative, immersive visualization for the exploration of scientific datasets and review techniques and tools that have been developed and deployed at the National Renewable Energy Laboratory (NREL). We believe that collaborative visualizations linking statistical interfaces and graphics on laptops and high-performance computing (HPC) with 3D visualizations on immersive displays (head-mounted displays and large-scale immersive environments) enable scientific workflows that further rapid exploration of large, high-dimensional datasets by teams of analysts. We present a framework, PlottyVR, that blends statistical tools, general-purpose programming environments, and simulation with 3D visualizations. To contextualize this framework, we propose a categorization and loose taxonomy of collaborative visualization and analysis techniques. Finally, we describe how scientists and engineers have adopted this framework to investigate large, complex datasets.

collaborative visualization↗
DOE OSTI2025

Speeding-up fuzzing through directional seeds

Abstract Fuzzing is an automated process for discovering inputs in a program that may trigger unexpected behavior. Today, fuzzing has become a standard practice for the discovery of bugs and security vulnerabilities. However, the main issue with such practices is that the exploration of the input space of programs can often be prohibitively expensive. Therefore, several alternative fuzzing strategies have been introduced during the last few years. Some fuzzing techniques rely on human expertise to provide a plausible set of initial input examples, namely, seeds. However, the process of handcrafting seeds for fuzzing purposes often becomes strenuous for humans as it requires a deeper understanding of the Program-Under-Test (PUT). Also, the use of known inputs to programs often does not trigger vulnerable program behavior or may not reach potentially vulnerable code locations. To address those issues, we propose a seed generation framework that enables Human-In-The-Loop (HITL) directed fuzzing where the human assumes a more active role in the creation of seeds that can penetrate and assess desired locations of the PUT. Our proposed framework uses Symbolic Execution (SE) to generate seeds that exercise paths to target program locations. Moreover, our framework enables the visualization of the explored execution paths in the binary of the PUT for the generated seeds. We evaluated our approach on a set of 12 carefully designed C programs with diverse characteristics that mimic real-world programs. The experimental results show the effectiveness of the proposed approach in improving the performance of standard fuzzing tools such as the American Fuzzy Lop ("Image missing" <#comment/> ). Specifically, our solution can generate seeds that substantially enhance the performance of the fuzzer, achieving speedups ranging from $$1.46\times $$ 1.46 × to $$68.53\times $$ 68.53 × for branch conditions, $$1.39\times $$ 1.39 × to $$254.62\times $$ 254.62 × for branch depths, $$14,879.59\times $$ 14 , 879.59 × to $$30,295.88\times $$ 30 , 295.88 × for branch widths over traditional seeds. Additionally, the speedup increases with the number of target function ranging from $$12,260\times $$ 12 , 260 × to $$22,856.07\times $$ 22 , 856.07 × over traditional seeds while only requiring less than 15 seconds on average for the seed generation step.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2016

VERAView User's Guide

VERAView has been developed as an interactive graphical interface for the visualization and engineering analyses of output data from VERA. The python-based software is easy to install and intuitive to use, and provides instantaneous 2D and 3D images, 1D plots, and alpha-numeric data from VERA multi-physics simulations. This document provides a brief overview of the software and some description of the major features of the application, including examples of each of the encapsulated ‘widgets’ that have been implemented thus far. VERAView is still under major development and large changes in the software and this document are still anticipated.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2022

The Importance of Scientific Visualization on Novel Hardware

Innovation in HPC hardware and adoption of heterogeneous systems has led to a variety of unique programming models. This has led to a challenge for scientific visualization software (and indeed all HPC software) to take full advantage of recent generations of supercomputing. Edge computing, where hardware is specialized for the needs of the particular application, exacerbates the problem. VTK-m has had many successes on this front by providing device-agnostic algorithms that compare favorably to implementations written to specific devices as shown in Table 1. However, VTK-m has focused mostly on GPU and traditional CPU multicore technology. There are numerous processor technologies, both existing and potential future, that are not being addressed by current R&D efforts.

97 MATHEMATICS AND COMPUTING↗