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All sourcesNASA NTRSDOE OSTI
NASA NTRS2022

L-Band Microwave Satellite Data and Model Simulations Over the Dry Chaco to Estimate Soil Moisture, Soil Temperature, Vegetation and Soil Salinity

The Dry Chaco in South America is a semi-arid ecoregion prone to dryland salinization. In this region, we investigated coarse-scale surface soil moisture (SM), soil temperature, soil salinity and vegetation, using L-band microwave brightness temperature (TB) observations and retrievals from the Soil Moisture Ocean Salinity (SMOS) and Soil Moisture Active Passive (SMAP) satellite missions, Catchment Land Surface Model (CLSM) simulations, and in situ measurements within 26 sampled satellite pixels. Across these 26 sampled pixels, the satellite-based SM outperformed CLSM SM compared to field data, and forward L-band TB simulations derived from in situ SM and temperature performed better than those derived from CLSM estimates relative to SMOS TB observations. The surface salinity for the sampled pixels was on average only 4 mg/g and only locally influenced the TB simulations, when including salinity in the dielectric mixing model of the forward radiative transfer model (RTM) simulations. To explore the potential of retrieving salinity together with other RTM parameters to optimize TB simulations over the entire Dry Chaco, the RTM was inverted using 10 years of multi-angular SMOS TB data and constraints of CLSM SM and temperature. However, the latter modeled SM was not sufficiently accurate and factors such as open surface water were missing in the background constraints, so that the salinity retrievals effectively represented a bulk correction of the dielectric constant, rather than salinity per se. However, the retrieval of vegetation, scattering albedo and surface roughness resulted in realistic values.

L-Band↗
DOE OSTI2025

GLBRC Soil Yearlong Incubation 13C-SIP-Lipidomics

Data package for Lipids represent a dynamic, yet stable pool of microbially-derived soil carbon This data is published under a CC0 license. The authors encourage data reuse and request attribution by referencing the below citations for the data packages and associated manuscript. Please cite as: Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. GLBRC Soil Yearlong Incubation 13C-SIP-Lipidomics. [Data Set] PNNL DataHub. doi: Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. MSV000097435: GLBRC soil yearlong incubation 13C-SIP-Lipidomics [Data Set] MassIVE. doi:10.25345/C57659T3K Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. Lipids represent a dynamic, yet stable pool of microbially-derived soil carbon. In Prep This data package consists of compound-specific 13C SIP-lipidomics data from a yearlong tracer incubation experiment designed to investigate microbial lipid persistence in switchgrass bioenergy crop soils. In order to explore how lipid structure may modulate the persistence of C in soil lipids, we leveraged soils from two sites (Michigan - sandy texture, Wisconsin - silty texture) operated by the U.S. Department of Energy-funded Great Lakes Bioenergy Research Center (GLBRC). These sites had comparable climates, identical management practices, but contrasting soil textures, allowing us to assess the variability of lipid accrual or degradation in soils as well as provide insight regarding the degree to which edaphic properties may regulate the retention of soil lipids. Untargeted lipidomics analyses were performed to identify 13C-labeled lipids in the soil microbiome after long-term incubation. Soils were supplemented with 100 micrograms glucose per gram dry soil (99 atom % 13C or natural abundance for paired control) and incubated; samples were collected two months and one year after glucose addition. Lipid extracts (MPLEx) were analyzed by LC-MS/MS and identified using LIQUID. Calculation of isotopic enrichment of lipids was performed by targeted approach using TarMet to quantify lipid isotopologues and IsoCorrectoR to correct for natural abundance isotopes. Contents: Data package contents reported here are the first version and contain downstream analysis files for the raw LC-MS mass spectrometry files (.mzXML) deposited at the MassIVE database repository under accession MSV000097435 (80 experimental runs; 5.85 GB) | MassIVE DOI: 10.25345/C57659T3K. Support files include the additional data download 'Read Me' file containing data descriptor information. Reported data download contents are structured for compliance with project data sharing guidelines, community standards initiatives, and sponsor stakeholder policies supporting FAIR data principles. Data processing software, analysis tools, and data workflows are listed below corresponding to the host repository long-term location. Available Data Downloads (0.3 GB): "GLBRC soil yearlong incubation 13C-SIP-Lipidomics_readme.txt" - 'Read Me' data package content file (txt) "GLBRC_DataPackage_analysis files" - Data processing files (Rmd) and saved intermediate data processing outputs (rds, csv, xlsx) "GLBRC_13C_lipidomics_dataset.xlsx" - processed data in tabular format (xlsx) Linked Software: LIQUID LC-MS Analysis Software | 10.5281/zenodo.6459462 Lipid Mini-On Software Tools | 10.5281/zenodo.1492803 pmartR Omics Statistical Software | 10.5281/zenodo.6108667 xcms (v4.3.3) TarMet (v1.1.1) IsoCorrectoR (1.24.0) Funding Acknowledgments: This research was supported by an Early Career Research Program award funded by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research (OBER) Genomic Science program under FWP 68292, FWP 07880 and EMSL Exploratory Research Project 51095. A portion of this work was performed in the William R. Wiley Environmental Molecular Sciences Laboratory, a national scientific user facility sponsored by OBER and located at Pacific Northwest National Laboratory (PNNL). PNNL is a multi-program national laboratory operated by Battelle for the DOE under Contract DE-AC05-76RLO1830.

Rempfert, Kaitlin R [Pacific Northwest National La↗
NASA NTRS1986

Overview of the Shuttle Imaging Radar-B preliminary scientific results

Data collected with the Shuttle Imaging Radar-B (SIR-B) on the October 5, 1985 Shuttle mission are discussed. The design and capabilities of the sensor which operates in a fixed illumination geometry and has incidence angles between 15 and 60 deg with 1 deg increments are described. Problems encountered with the SIR-B during the mission are examined. the The radar stereo imaging capability of the sensor was verified and three-dimensional images of the earth surface were obtained. The oceanography experiments provided significant data on ocean wave and internal wave patterns, oil spills, and ice zones. The geological images revealed that the sensor can evaluate penetration effect in dry soil from buried receivers and the existence of subsurface dry channels in the Egyptian desert was validated. The use of multiincidence angle imaging to classify terrain units and derive vegetation maps and the development of terrain maps are confirmed.

Elachi, C.↗
NASA NTRS1992

Estimating the daily course of Konza Prairie latent heat fluxes using a modified Tergra model

Experimental tests of the Tergra-2 model are based on data collected under moderately wet to wet and very dry soil moisture conditions. Further testing of the model under intermediate soil moisture conditions is required and additional testing under very dry conditions may lead to modifications that make the model more suitable to water-stressed conditions. Combining the Tergra model with a soil evaporation routine should enhance the accuracy of the model and allow it to be employed in situations where vapor fluxes are not almost solely attributable to transpiration.

Hope, Allen S.↗
NASA NTRS1972

Dielectric constants of soils at microwave frequencies

A knowledge of the complex dielectric constant of soils is essential in the interpretation of microwave airborne radiometer data of the earth's surface. Measurements were made at 37 GHz on various soils from the Phoenix, Ariz., area. Extensive data have been obtained for dry soil and soil with water content in the range from 0.6 to 35 percent by dry weight. Measurements were made in a two arm microwave bridge and results were corrected for reflections at the sample interfaces by solution of the parallel dielectric plate problem. The maximum dielectric constants are about a factor of 3 lower than those reported for similar soils at X-band frequencies.

Geiger, F. E.↗
DOE OSTI2024

Evaluating the Persistence of Soil Carbon After a 30-Year Nitrogen Fertilization Experiment at the Fernow Experimental Forest, WV

We sampled soils in a previously nitrogen (N)-fertilized watershed (Watershed 3), which received 35 kg N per hectare annually for 30 years, and a reference watershed (Watershed 7), 4 years after the end of a 30-year N fertilization experiment at the Fernow Experimental Forest in West Virginia. As N deposition has reduced soil pH and plant carbon (C) investments into the rhizosphere, we compared the extent to which removing these potential limitations to microbial decomposition by increasing soil pH, adding artificial root exudates, or elevating soil temperature would increase microbial decomposition (and soil C losses) in soils that have and have not received excess N inputs. As such, we incubated soils with and without the addition of artificial root exudates and dolomitic lime (2 amendment treatments and 1 untreated control), at three different temperatures (15, 20, and 25 C) to simulate warming. We measured soil respiration, enzyme activity (acid phosphatase, N -acetyl-β-glucosaminidase, beta-glucosidase, phenol oxidase, and peroxidase), and microbial biomass carbon in a 15-week microcosm experiment. All of the datasheets include the metadata for all of the treatment combinations from this incubation experiment (ID, incubation temperature, treatment, watershed).The "Soil_Chemistry_Data.csv" data includes (1) the ratio of dry soil weight (g) by wet (or fresh) soil weight (g) after 72 hours at 65 C, (2) the wet (or fresh) weight of the soil samples used to determine soil pH, and (3) soil pH, which was measured in CaCl2. Detailed methods for the measurements of soil pH are described in the datasheet itself.The "Respiration_Data.csv" data includes (1) respiration day for the measurement, and (2) cumulative CO2 respiration (mmol) measured in the microcosms on specific days.The "Microbial_Biomass_Data.csv" data includes (1) mmol microbial biomass carbon per g (dry weight) of soil in each microcosm.The "Enzyme_Data.csv" data includes (1) all extracellular soil enzyme activity (N-acetyl-glucosaminidase (NAG), acid phosphatase (AP), β-glucosidase (BG), phenol oxidase and peroxidase) that we measured in our microcosms.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2017

In situ monitoring of H and O stable isotopes in soil water reveals ecohydrologic dynamics in managed soil systems [Urban ecohydrologic dynamics revealed by in situ monitoring of H and O stable isotopes in soil water]

The water cycle in urban and hydrologically managed settings is subject to perturbations that are dynamic on small spatial and temporal scales; the effects of which may be especially profound in soils. We deploy a membrane inlet-based laser spectroscopy system in conjunction with soil moisture and temperature sensors to monitor soil water dynamics and H and O stable isotope ratios (δ 2 H and δ 18 O values) in a seasonally irrigated urban-landscaped garden soil over the course of 9 months between the cessation of irrigation in the autumn and the onset of irrigation through the summer. Here, we find that soil water δ 2 H and δ 18 O values predominately reflect seasonal precipitation and irrigation inputs. A comparison of total soil water by cryogenic extraction and mobile soil water measured by in situ water vapor probes reveals that initial infiltration events after long periods of soil drying (the autumn season in this case) emplace water into the soil matrix that is not easily replaced by, or mixed with, successive pulses of infiltrating soil water. Tree stem xylem water H and O stable isotope composition did not match that of available water sources. Our findings suggest that partitioning of soil water into mobile and immobile “pools” and resulting ecohydrologic separation may occur in engineered and hydrologically managed soils and not be limited to natural settings. Furthermore, the laser spectroscopy method detailed here has potential to yield insights in a variety of critical zone and vadose zone studies, potential that is heightened by the simplicity and portability of the system.

07 ISOTOPE AND RADIATION SOURCES↗
DOE OSTI2015

Permafrost thaw and soil moisture driving CO 2 and CH 4 release from upland tundra

Abstract As permafrost degrades, the amount of organic soil carbon (C) that thaws during the growing season will increase, but decomposition may be limited by saturated soil conditions common in high‐latitude ecosystems. However, in some areas, soil drying is expected to accompany permafrost thaw as a result of increased water drainage, which may enhance C release to the atmosphere. We examined the effects of ecosystem warming, permafrost thaw, and soil moisture changes on C balance in an upland tundra ecosystem. This study was conducted at a water table drawdown experiment, established in 2011 and located within the Carbon in Permafrost Experimental Heating Research project, an ecosystem warming and permafrost thawing experiment in Alaska. Warming and drying increased cumulative growing season ecosystem respiration by ~20% over 3 years of this experiment. Warming caused an almost twofold increase in decomposition of a common substrate in surface soil (0–10 cm) across all years, and drying caused a twofold increase in decomposition (0–20 cm) relative to control after 3 years of drying. Decomposition of older C increased in the dried and in the combined warmed + dried plots based on soil pore space 14 CO 2 . Although upland tundra systems have been considered CH 4 sinks, warming and ground thaw significantly increased CH 4 emission rates. Water table depth was positively correlated with monthly respiration and negatively correlated with CH 4 emission rates. These results demonstrate that warming and drying may increase loss of old permafrost C from tundra ecosystems, but the form and magnitude of C released to the atmosphere will be driven by changes in soil moisture.

Natali, Susan M.↗
DOE OSTI2023

Throughfall-Reduction Drying Effects on Soil Moisture and Soil Temperature at 30-Minute Intervals Four Lowland Panamanian Forests

Objectives: Climatic drying is predicted for many tropical forests, yet effects on soil properties across moisture and soil gradients within tropical forests remain poorly characterized, hampering predictions of forest-climate feedbacks. We hypothesized that drying would suppress soil CO2 fluxes (i.e., respiration) in already-drier tropical forests by further reductions in soil moisture, but increases CO2 fluxes in wetter tropical forests by alleviating anaerobiosis and soil saturation. We measured soil CO2 fluxes, soil moisture, soil temperature, and forest floor biomass during wet-dry cycles (2015 – 2022) in four Panamanian forests that vary in rainfall and soil fertility. We also surveyed all tree species and identified to species in 2018 and 2019.Results: We found that soil moisture peaked in the wet season and declined in the dry season. Measured soil CO2 fluxes declined in the dry season and peaked in the early wet season ahead of peak soil moisture, resulting in a lower soil moisture optimum for respiration than previously modeled. Chronic throughfall exclusion also suppressed soil moisture across the four forests, and also initially suppressed soil CO2 fluxes across forests. There was sustained suppression of soil CO2 fluxes after four years in the wettest forest only (-28 ± 4% during the dry season), but elevated soil CO2 fluxes in a fertile forest after four years (+75 ± 28% during the late wet season). The unexpected negative drying effect in the wettest, most infertile forest could have resulted from reduced vertical flushing of nutrients into soils, as the drying effect increased with time. Including hydro-nutrient interactions in ecosystem models could improve predictions of tropical forest-climate feedbacks (Cusack et al. 2023). Datasets included: Datasets here include .csv and .xls files for volumetric soil moisture (volume/volume) and soil temperature (°C). Data were taken at 30-minute intervals at 5cm and 20cm depths using permanent probes and data loggers (see methods). Data presented are from 2018-2019. There is also a .kml file that includes coordinates for all 32 plots included in the study of four forests (n = 4 throughfall reduction and n = 4 control plots per site). No special software is needed to open these files.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1979

Chemical and physical microenvironments at the Viking landing sites

Physical and chemical considerations permit the division of the near-surface regolith on Mars into at least six zones of distinct microenvironments. The zones are euphotic, duricrust/peds, tempofrost, permafrost, endolithic, and interfacial/transitional. Microenvironments vary significantly in temperature extremes, mean temperature, salt content, relative pressure of water vapor, UV and visible light irradiance, and exposure to ionizing radiation events (100 Mrad) and oxidative molecular species. From what is known of the chemistry of the atmosphere and regolith fines (soil), limits upon the aqueous chemistry of soil pastes may be estimated. Heat of wetting could reach 45 cal/g dry soil; initial pH is indeterminate between 1 and 10; ionic strength and salinity are predicted to be extremely high; freezing point depression is inadequate to provide quantities of liquid water except in special cases. The prospects for biotic survival are grim by terrestrial standards, but the extremes of biological resiliency are inaccessible to evaluation. Second-generation in situ experiments which will better define Martian microenvironments are clearly possible. Antarctic dry valleys are approximations to Martian conditions, but deviate significantly by at least half-a-dozen criteria.

Clark, B. C.↗
NASA NTRS1972

Soil moisture measurements with microwave, radiometers

One technique of measuring moisture content that appears promising is that of microwave radiometry. In the microwave region of the spectrum, the emissivity of water is approximately 0.4, whereas that of dry soil is approximately 0.9. Therefore, the emissivity of the soil can range from about 0.6 to 0.9 as the soil changes from a wet to a dry condition. Recent ground base measurements have demonstrated emissivity changes of this magnitude. To test the use of this approach for remote sensing of soil moisture, flights were made over agricultural test sites in the vicinity of Phoenix, Ariz., during late February 1971. On the same day, soil moisture measurements were made on the ground for 200 fields. On board the aircraft were six microwave radiometers, ranging in wavelength from 21 cm to 8 mm. The results of one of these radiometers are presented.

Schmugge, T. J.↗
NASA NTRS1985

Microwave Remote Sensing of Soil Moisture

Because of the large contrast between the dielectric constant of liquid water and that of dry soil at microwave wavelength, there is a strong dependence of the thermal emission and radar backscatter from the soil on its moisture content. This dependence provides a means for the remote sensing of the moisture content in a surface layer approximately 5 cm thick. The feasibility of these techniques is demonstrated from field, aircraft and spacecraft platforms. The soil texture, surface roughness, and vegetative cover affect the sensitivity of the microwave response to moisture variations with vegetation being the most important. It serves as an attenuating layer which can totally obscure the surface. Research indicates that it is possible to obtain five or more levels of moisture discrimination and that a mature corn crop is the limiting vegetation situation.

Schmugge, T. J.↗
NASA NTRS1984

Microwave remote sensing of soil moisture

Because of the large contrast between the dielectric constant of liquid water and that of dry soil at microwave wavelength, there is a strong dependence of the thermal emission and radar backscatter from the soil on its moisture content. This dependence provides a means for the remote sensing of the moisture content in a surface layer approximately 5 cm thick. The feasibility of these techniques is demonstrated from field, aircraft and spacecraft platforms. The soil texture, surface roughness, and vegetative cover affect the sensitivity of the microwave response to moisture variations with vegetation being the most important. It serves as an attenuating layer which can totally obscure the surface. Research indicates that it is possible to obtain five or more levels of moisture discrimination and that a mature corn crop is the limiting vegetation situation.

Schmugge, T. J.↗
DOE OSTI2022

Substantial differences in soil viral community composition within and among four Northern California habitats

Abstract Viruses contribute to food web dynamics and nutrient cycles in diverse ecosystems, yet the biogeographical patterns that underlie these viral dynamics are poorly understood, particularly in soil. Here, we identified trends in soil viral community composition in relation to habitat, moisture content, and physical distance. We generated 30 soil viromes from four distinct habitats (wetlands, grasslands, woodlands, and chaparral) by selectively capturing virus-sized particles prior to DNA extraction, and we recovered 3432 unique viral ‘species’ (dsDNA vOTUs). Viral communities differed significantly by soil moisture content, with viral richness generally higher in wet compared to dry soil habitats. However, vOTUs were rarely shared between viromes, including replicates <10 m apart, suggesting that soil viruses may not disperse well and that future soil viral community sampling strategies may need to account for extreme community differences over small spatial scales. Of the 19% of vOTUs detected in more than one virome, 93% were from the same habitat and site, suggesting greater viral community similarity in closer proximity and under similar environmental conditions. Within-habitat differences indicate that extensive sampling would be required for rigorous cross-habitat comparisons, and results highlight emerging paradigms of high viral activity in wet soils and soil viral community spatial heterogeneity.

Durham, Devyn M.↗
NASA NTRS1985

Chemical Weathering of Soils from the Dry Valleys of Antarctica: a Terrestrial Analog of Martian Weathering Processes

Martian soil subjected to chemical weathering processes could contain the following likely constituents: (1) fresh primary silicate material; (2) partially altered primary silicates; (3) secondary minerals, possibly including clay minerals, evaporites, carbonates, sulfates, hydrates, and zeolites; and (4) altered volcanic glass or impact glass. The soil may also include palogonite and other alteration products and secondary minerals. It is unlikely therefore that an equilibrium assemblage of minerals would be present. From the detailed study of the soils from the Dry Valleys of Antarctica, it is obvious that the complex processes in operation produce major changes in the parent materials, depending upon where the constituents reside and the degree to which weathering and diagenesis operates. It is clear that natural near surface environments, even in very cold and dry regions, may produce extremely complex soils. Extreme caution must be taken when interpreting the results and drawing conclusions, especially about possible processes operating in regoliths in cold, arid environments similar to those of the Dry Valleys or Mars.

Gibson, E. K., Jr.↗
NASA NTRS2009

Measuring Low Concentrations of Liquid Water in Soil

An apparatus has been developed for measuring the low concentrations of liquid water and ice in relatively dry soil samples. Designed as a prototype of instruments for measuring the liquidwater and ice contents of Lunar and Martian soils, the apparatus could also be applied similarly to terrestrial desert soils and sands. The apparatus is a special-purpose impedance spectrometer: Its design is based on the fact that the electrical behavior of a typical soil sample is well approximated by a network of resistors and capacitors in which resistances decrease and capacitances increase (and, hence, the magnitude of impedance decreases) with increasing water content.

Buehler, Martin↗
DOE OSTI2017

Closing the scale gap between land surface parameterizations and GCMs with a new scheme, SiB3-Bins: SOIL MOISTURE SCALE GAP

The interaction of land with the atmosphere is sensitive to soil moisture (W). Evapotranspiration (ET) reacts to soil moisture in a nonlinear way, f(W), as soils dry from saturation to wilt point. This nonlinear behavior and the fact that soil moisture varies on scales as small as 1–10 m in nature, while numerical general circulation models (GCMs) have grid cell sizes on the order of 1 to 100s of kilometers, makes the calculation of grid cell-average ET problematic. It is impractical to simulate the land in GCMs on the small scales seen in nature, so techniques have been developed to represent subgrid scale heterogeneity, including: (1) statistical-dynamical representations of grid subelements of varying wetness, (2) relaxation of f(W), (3) moderating f(W) with approximations of catchment hydrology, (4) “tiling” the landscape into vegetation types, and (5) hyperresolution. Here we present an alternative method for representing subgrid variability in W, one proven in a conceptual framework where landscape-scale W is represented as a series of “Bins” of increasing wetness from dry to saturated. The grid cell-level f(W) is defined by the integral of the fractional area of the wetness bins and the value of f(W) associated with each. This approach accounts for the spatiotemporal dynamics of W. We implemented this approach in the SiB3 land surface parameterization and then evaluated its performance against a control, which assumes a horizontally uniform field of W. We demonstrate that the Bins method, with a physical basis, attenuates unrealistic jumps in model state and ET seen in the control runs.

54 ENVIRONMENTAL SCIENCES↗