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All sourcesNASA NTRSDOE OSTI
NASA NTRS1989

Identification of asteroid dynamical families

Problems involved in the identification of asteroid dynamical families are discussed, and some methodological guidelines are presented. Asteroid family classifications are reviewed, and differences in the existing classifications are examined with special attention given to the effects of observational selection on the classification of family membership. The paper also discusses various theories of secular perturbations, including the classical linear theory, the theory of Williams (1969), and the higher order/degree theory of Yuasa (1973).

Valsecchi, G. B.↗
DOE OSTI2017

Development of Classification Systems for Wave Energy Resources and WEC Technologies

The submission includes wave resource classification reports, summary of classification statistics and regional trends, and data files with classification statistics for selected sites for extreme significant wave height. Two conference papers were uploaded that include classification metrics and geographic distributions for US coastal waters. These conference papers are: Neary, V.S., Coe, R.G., Cruz, J., Haas, K., Bacelli, G., Debruyne, Y., Ahn, S., Nevarez, V. (2017) Classification systems for wave energy resources and WEC technologies. Proceedings of 12th European Wave and Tidal Energy Conference Series (EWTEC 2017), Cork, Ireland, August 27-September 1, 2017 Haas, K., Ahn, S., Neary, V.S., and S. Bredin (2017) Development of a wave energy classification system. Proceedings of the 5th Marine Energy Technology Symposium (METS2017), Washington, D.C., May 1-3, 2017

16 TIDAL AND WAVE POWER↗
DOE OSTI2015

A new classification scheme of plastic wastes based upon recycling labels

Highlights: • PET, HPDE or PP types of plastics are considered. • An automated classification of plastic bottles based on the feature extraction and classification methods is performed. • The decision mechanism consists of PCA, Kernel PCA, FLDA, SVD and Laplacian Eigenmaps methods. • SVM is selected to achieve the classification task and majority voting technique is used. - Abstract: Since recycling of materials is widely assumed to be environmentally and economically beneficial, reliable sorting and processing of waste packaging materials such as plastics is very important for recycling with high efficiency. An automated system that can quickly categorize these materials is certainly needed for obtaining maximum classification while maintaining high throughput. In this paper, first of all, the photographs of the plastic bottles have been taken and several preprocessing steps were carried out. The first preprocessing step is to extract the plastic area of a bottle from the background. Then, the morphological image operations are implemented. These operations are edge detection, noise removal, hole removing, image enhancement, and image segmentation. These morphological operations can be generally defined in terms of the combinations of erosion and dilation. The effect of bottle color as well as label are eliminated using these operations. Secondly, the pixel-wise intensity values of the plastic bottle images have been used together with the most popular subspace and statistical feature extraction methods to construct the feature vectors in this study. Only three types of plastics are considered due to higher existence ratio of them than the other plastic types in the world. The decision mechanism consists of five different feature extraction methods including as Principal Component Analysis (PCA), Kernel PCA (KPCA), Fisher’s Linear Discriminant Analysis (FLDA), Singular Value Decomposition (SVD) and Laplacian Eigenmaps (LEMAP) and uses a simple experimental setup with a camera and homogenous backlighting. Due to the giving global solution for a classification problem, Support Vector Machine (SVM) is selected to achieve the classification task and majority voting technique is used as the decision mechanism. This technique equally weights each classification result and assigns the given plastic object to the class that the most classification results agree on. The proposed classification scheme provides high accuracy rate, and also it is able to run in real-time applications. It can automatically classify the plastic bottle types with approximately 90% recognition accuracy. Besides this, the proposed methodology yields approximately 96% classification rate for the separation of PET or non-PET plastic types. It also gives 92% accuracy for the categorization of non-PET plastic types into HPDE or PP.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2019

Convolutional Neural Networks for Hydrometeor Classification using Dual Polarization Doppler Radars

Traditional fuzzy logic hydrometeor classification algorithm is a common way to classify precipitation type from dual polarization doppler radar. We propose a deep learning-based method to estimate hydrometeors efficiently using observed radar variables such as horizontal reflectivity (Z H ), differential reflectivity (Z DR ), correlation coefficient (ρ HV ) and specific differential phase (K DP ) from National Weather Service NEXRAD collected at Vance AFB facility at the first elevation angle from January 1st, 2015 to July 31th, 2019. We stack matrices of values from these four polarimetric variables as one 3D array. Samples are preprocessed and divided into training, validation and test set with four target hydrometeor categories (Ice Crystals (IC), Dry Snow (DS), Light and/or Moderate Rain (RA) and Big Drops (rain) (BD)). We developed and optimized five Convolutional Neural Networks (CNNs) architectures and achieved an accuracy of 87.23% and 93.736% respectively using modified ResNet with two different input data selection strategies for hydrometeor classification. Training data selection strategies were important to ensure use of available samples in training for robust performance evaluated by applying the models to novel time period beyond what was use to train the model. Seasonal variation in atmospheric conditions lead to seasonal patterns of liquid vs solid forms of precipitation, that poses challenge for classifier and offer insights into domain specific approaches required for problem of hydrometeor identification. Computationally efficient and scalable approach for classification of hydrometeors offer opportunties to effectively use the large volumes of rich time series of radar observations that are becoming increasingly available.

Lu, Yuping↗
NASA NTRS1973

Machine processing of remotely sensed data; Proceedings of the Conference, Purdue University, West Lafayette, Ind., October 16-18, 1973

Topics discussed include the management and processing of earth resources information, special-purpose processors for the machine processing of remotely sensed data, digital image registration by a mathematical programming technique, the use of remote-sensor data in land classification (in particular, the use of ERTS-1 multispectral scanning data), the use of remote-sensor data in geometrical transformations and mapping, earth resource measurement with the aid of ERTS-1 multispectral scanning data, the use of remote-sensor data in the classification of turbidity levels in coastal zones and in the identification of ecological anomalies, the problem of feature selection and the classification of objects in multispectral images, the estimation of proportions of certain categories of objects, and a number of special systems and techniques. Individual items are announced in this issue.

Source record↗
DOE OSTI2012

ACTIVE LEARNING TO OVERCOME SAMPLE SELECTION BIAS: APPLICATION TO PHOTOMETRIC VARIABLE STAR CLASSIFICATION

Despite the great promise of machine-learning algorithms to classify and predict astrophysical parameters for the vast numbers of astrophysical sources and transients observed in large-scale surveys, the peculiarities of the training data often manifest as strongly biased predictions on the data of interest. Typically, training sets are derived from historical surveys of brighter, more nearby objects than those from more extensive, deeper surveys (testing data). This sample selection bias can cause catastrophic errors in predictions on the testing data because (1) standard assumptions for machine-learned model selection procedures break down and (2) dense regions of testing space might be completely devoid of training data. We explore possible remedies to sample selection bias, including importance weighting, co-training, and active learning (AL). We argue that AL-where the data whose inclusion in the training set would most improve predictions on the testing set are queried for manual follow-up-is an effective approach and is appropriate for many astronomical applications. For a variable star classification problem on a well-studied set of stars from Hipparcos and Optical Gravitational Lensing Experiment, AL is the optimal method in terms of error rate on the testing data, beating the off-the-shelf classifier by 3.4% and the other proposed methods by at least 3.0%. To aid with manual labeling of variable stars, we developed a Web interface which allows for easy light curve visualization and querying of external databases. Finally, we apply AL to classify variable stars in the All Sky Automated Survey, finding dramatic improvement in our agreement with the ASAS Catalog of Variable Stars, from 65.5% to 79.5%, and a significant increase in the classifier's average confidence for the testing set, from 14.6% to 42.9%, after a few AL iterations.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS1977

Applications of remote sensing, volume 3

The author has identified the following significant results. Of the four change detection techniques (post classification comparison, delta data, spectral/temporal, and layered spectral temporal), the post classification comparison was selected for further development. This was based upon test performances of the four change detection method, straightforwardness of the procedures, and the output products desired. A standardized modified, supervised classification procedure for analyzing the Texas coastal zone data was compiled. This procedure was developed in order that all quadrangles in the study are would be classified using similar analysis techniques to allow for meaningful comparisons and evaluations of the classifications.

Landgrebe, D. A.↗
NASA NTRS1981

Computer implemented land cover classification using LANDSAT MSS digital data: A cooperative research project between the National Park Service and NASA. 3: Vegetation and other land cover analysis of Shenandoah National Park

Four LANDSAT frames, each corresponding to one of the four seasons were spectrally classified and processed using NASA-developed computer programs. One data set was selected or two or more data sets were marged to improve surface cover classifications. Selected areas representing each spectral class were chosen and transferred to USGS 1:62,500 topographic maps for field use. Ground truth data were gathered to verify the accuracy of the classifications. Acreages were computed for each of the land cover types. The application of elevational data to seasonal LANDSAT frames resulted in the separation of high elevation meadows (both with and without recently emergent perennial vegetation) as well as areas in oak forests which have an evergreen understory as opposed to other areas which do not.

Cibula, W. G.↗
DOE OSTI2011

NEOWISE STUDIES OF SPECTROPHOTOMETRICALLY CLASSIFIED ASTEROIDS: PRELIMINARY RESULTS

The NEOWISE data set offers the opportunity to study the variations in albedo for asteroid classification schemes based on visible and near-infrared observations for a large sample of minor planets. We have determined the albedos for nearly 1900 asteroids classified by the Tholen, Bus, and Bus-DeMeo taxonomic classification schemes. We find that the S-complex spans a broad range of bright albedos, partially overlapping the low albedo C-complex at small sizes. As expected, the X-complex covers a wide range of albedos. The multiwavelength infrared coverage provided by NEOWISE allows determination of the reflectivity at 3.4 and 4.6 {mu}m relative to the visible albedo. The direct computation of the reflectivity at 3.4 and 4.6 {mu}m enables a new means of comparing the various taxonomic classes. Although C, B, D, and T asteroids all have similarly low visible albedos, the D and T types can be distinguished from the C and B types by examining their relative reflectance at 3.4 and 4.6 {mu}m. All of the albedo distributions are strongly affected by selection biases against small, low albedo objects, as all objects selected for taxonomic classification were chosen according to their visible light brightness. Due to these strong selection biases, we are unable to determine whether or not there are correlations between size, albedo, and space weathering. We argue that the current set of classified asteroids makes any such correlations difficult to verify. A sample of taxonomically classified asteroids drawn without significant albedo bias is needed in order to perform such an analysis.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Survey of Image Denoising Methods for Medical Image Classification

Medical imaging devices, such as X-ray machines, inherently produce images that suffer from visual noise. Our objectives were to (i.) determine the effect of image denoising on a medical image classification task, and (ii.) determine if there exists a correlation between image denoising performance and medical image classification performance. We performed the medical image classification task on chest X-rays using the DenseNet-121 convolutional neural network (CNN) and used the peak signal-to-noise ratio (PSNR) and structural similarity (SSIM) metrics as the image denoising performance measures. We first found that different denoising methods can make a statistically significant difference in classification performance for select labels. We also found that denoising methods affect fine-tuned models more than randomly-initialized models and that fine-tuned models have significantly higher and more uniform performance than randomly-initialized models. Lastly, we found that there is no significant correlation between PSNR and SSIM values and classification performance for our task.

Michael, Peter↗
NASA NTRS1993

Optimal band selection for dimensionality reduction of hyperspectral imagery

Hyperspectral images have many bands requiring significant computational power for machine interpretation. During image pre-processing, regions of interest that warrant full examination need to be identified quickly. One technique for speeding up the processing is to use only a small subset of bands to determine the 'interesting' regions. The problem addressed here is how to determine the fewest bands required to achieve a specified performance goal for pixel classification. The band selection problem has been addressed previously Chen et al., Ghassemian et al., Henderson et al., and Kim et al.. Some popular techniques for reducing the dimensionality of a feature space, such as principal components analysis, reduce dimensionality by computing new features that are linear combinations of the original features. However, such approaches require measuring and processing all the available bands before the dimensionality is reduced. Our approach, adapted from previous multidimensional signal analysis research, is simpler and achieves dimensionality reduction by selecting bands. Feature selection algorithms are used to determine which combination of bands has the lowest probability of pixel misclassification. Two elements required by this approach are a choice of objective function and a choice of search strategy.

Stearns, Stephen D.↗
NASA NTRS1984

A comparison of Landsat point and rectangular field training sets for land-use classification

Rectangular training fields of homogeneous spectroreflectance are commonly used in supervised pattern recognition efforts. Trial image classification with manually selected training sets gives irregular and misleading results due to statistical bias. A self-verifying, grid-sampled training point approach is proposed as a more statistically valid feature extraction technique. A systematic pixel sampling network of every ninth row and ninth column efficiently replaced the full image scene with smaller statistical vectors which preserved the necessary characteristics for classification. The composite second- and third-order average classification accuracy of 50.1 percent for 331,776 pixels in the full image substantially agreed with the 51 percent value predicted by the grid-sampled, 4,100-point training set.

Tom, C. H.↗
NASA NTRS1981

LANDSAT landcover information applied to regional planning decisions

Land cover information derived from LANDSAT is being utilized by Piedmont Planning District Commission located in the State of Virginia. Progress to date is reported on a level one land cover classification map being produced with nine categories. The nine categories of classification are defined. The computer compatible tape selection is presented. Two unsupervised classifications were done, with 50 and 70 classes respectively. Twenty-eight spectral classes were developed using the supervised technique, employing actual ground truth training sites. The accuracy of the unsupervised classifications are estimated through comparison with local county statistics and with an actual pixel count of LANDSAT information compared to ground truth.

Dixon, C. M.↗
DOE OSTI2024

Identification of integrated proteomics and transcriptomics signature of alcohol-associated liver disease using machine learning

Distinguishing between alcohol-associated hepatitis (AH) and alcohol-associated cirrhosis (AC) remains a diagnostic challenge. In this study, we used machine learning with transcriptomics and proteomics data from liver tissue and peripheral mononuclear blood cells (PBMCs) to classify patients with alcohol-associated liver disease. The conditions in the study were AH, AC, and healthy controls. We processed 98 PBMC RNAseq samples, 55 PBMC proteomic samples, 48 liver RNAseq samples, and 53 liver proteomic samples. First, we built separate classification and feature selection pipelines for transcriptomics and proteomics data. The liver tissue models were validated in independent liver tissue datasets. Next, we built integrated gene and protein expression models that allowed us to identify combined gene-protein biomarker panels. For liver tissue, we attained 90% nested-cross validation accuracy in our dataset and 82% accuracy in the independent validation dataset using transcriptomic data. We attained 100% nested-cross validation accuracy in our dataset and 61% accuracy in the independent validation dataset using proteomic data. For PBMCs, we attained 83% and 89% accuracy with transcriptomic and proteomic data, respectively. The integration of the two data types resulted in improved classification accuracy for PBMCs, but not liver tissue. We also identified the following gene-protein matches within the gene-protein biomarker panels: CLEC4M-CLC4M, GSTA1-GSTA2 for liver tissue and SELENBP1-SBP1 for PBMCs. In this study, machine learning models had high classification accuracy for both transcriptomics and proteomics data, across liver tissue and PBMCs. The integration of transcriptomics and proteomics into a multi-omics model yielded improvement in classification accuracy for the PBMC data. The set of integrated gene-protein biomarkers for PBMCs show promise toward developing a liquid biopsy for alcohol-associated liver disease.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2015

Towards intelligent diagnostic system employing integration of mathematical and engineering model

The development of medical diagnostic system has been one of the main research fields during years. The goal of the medical diagnostic system is to place a nosological system that could ease the diagnostic evaluation normally performed by scientists and doctors. Efficient diagnostic evaluation is essentials and requires broad knowledge in order to improve conventional diagnostic system. Several approaches on developing the medical diagnostic system have been designed and tested since the earliest 60s. Attempts on improving their performance have been made which utilizes the fields of artificial intelligence, statistical analyses, mathematical model and engineering theories. With the availability of the microcomputer and software development as well as the promising aforementioned fields, medical diagnostic prototypes could be developed. In general, the medical diagnostic system consists of several stages, namely the 1) data acquisition, 2) feature extraction, 3) feature selection, and 4) classifications stages. Data acquisition stage plays an important role in converting the inputs measured from the real world physical conditions to the digital numeric values that can be manipulated by the computer system. One of the common medical inputs could be medical microscopic images, radiographic images, magnetic resonance image (MRI) as well as medical signals such as electrocardiogram (ECG) and electroencephalogram (EEG). Normally, the scientist or doctors have to deal with myriad of data and redundant to be processed. In order to reduce the complexity of the diagnosis process, only the significant features of the raw data such as peak value of the ECG signal or size of lesion in the mammogram images will be extracted and considered in the subsequent stages. Mathematical models and statistical analyses will be performed to select the most significant features to be classified. The statistical analyses such as principal component analysis and discriminant analysis as well as mathematical model of clustering technique have been widely used in developing the medical diagnostic systems. The selected features will be classified using mathematical models that embedded engineering theory such as artificial intelligence, support vector machine, neural network and fuzzy-neuro system. These classifiers will provide the diagnostic results without human intervention. Among many publishable researches, several prototypes have been developed namely NeuralPap, Neural Mammo, and Cervix Kit. The former system (NeuralPap) is an automatic intelligent diagnostic system for classifying and distinguishing between the normal and cervical cancerous cells. Meanwhile, the Cervix Kit is a portable Field-programmable gate array (FPGA)-based cervical diagnostic kit that could automatically diagnose the cancerous cell based on the images obtained during sampling test. Besides the cervical diagnostic system, the Neural Mammo system is developed to specifically aid the diagnosis of breast cancer using a fine needle aspiration image.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2014

Proteome-wide identification of predominant subcellular protein localizations in a bacterial model organism

Proteomics data provide unique insights into biological systems, including the predominant subcellular localization (SCL) of proteins, which can reveal important clues about their functions. Here we analyzed data of a complete prokaryotic proteome expressed under two conditions mimicking interaction of the emerging pathogen Bartonella henselae with its mammalian host. Normalized spectral count data from cytoplasmic, total membrane, inner and outer membrane fractions allowed us to identify the predominant SCL for 82% of the identified proteins. The spectral count proportion of total membrane versus cytoplasmic fractions indicated the propensity of cytoplasmic proteins to co-fractionate with the inner membrane, and enabled us to distinguish cytoplasmic, peripheral innermembrane and bona fide inner membrane proteins. Principal component analysis and k-nearest neighbor classification training on selected marker proteins or predominantly localized proteins, allowed us to determine an extensive catalog of at least 74 expressed outer membrane proteins, and to extend the SCL assignment to 94% of the identified proteins, including 18% where in silico methods gave no prediction. Suitable experimental proteomics data combined with straightforward computational approaches can thus identify the predominant SCL on a proteome-wide scale. Finally, we present a conceptual approach to identify proteins potentially changing their SCL in a condition-dependent fashion.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Better understanding and prediction of antiviral peptides through primary and secondary structure feature importance

The emergence of viral epidemics throughout the world is of concern due to the scarcity of available effective antiviral therapeutics. The discovery of new antiviral therapies is imperative to address this challenge, and antiviral peptides (AVPs) represent a valuable resource for the development of novel therapies to combat viral infection. We present a new machine learning model to distinguish AVPs from non-AVPs using the most informative features derived from the physicochemical and structural properties of their amino acid sequences. To focus on those features that are most likely to contribute to antiviral performance, we filter potential features based on their importance for classification. These feature selection analyses suggest that secondary structure is the most important peptide sequence feature for predicting AVPs. Our Feature-Informed Reduced Machine Learning for Antiviral Peptide Prediction (FIRM-AVP) approach achieves a higher accuracy than either the model with all features or current state-of-the-art single classifiers. Understanding the features that are associated with AVP activity is a core need to identify and design new AVPs in novel systems. The FIRM-AVP code and standalone software package are available at https://github.com/pmartR/FIRM-AVP with an accompanying web application at https://msc-viz.emsl.pnnl.gov/AVPR.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Science Validation for Dark Energy Research with Optical Imaging Surveys

The Universe has been expanding at an accelerating rate over the past several billion years, as though an unknown form of dark energy permeates all of space. The ultimate scientific goal of the proposed research is to distinguish between different physical mechanisms that could account for this observed accelerated expansion, for example, the zero-point energy of the vacuum, a dynamical form of energy that varies in time and/or space, or a modification to our theory of gravity. Wide- field optical imaging surveys of the night sky can test these competing models by measuring both the cosmic expansion history and the growth of large-scale structure. To this end, the Dark Energy Survey (DES) has cataloged several hundred million galaxies and thousands of supernovae. The Vera C. Rubin Observatory Legacy Survey of Space and Time (LSST), will enlarge the census to billions of galaxies and hundreds of thousands of supernovae. A critical question for these dark energy experiments is whether systematic uncertainties can continue to be controlled at a level to keep pace with the statistical precision offered by such enormous datasets. The immediate research objectives of this project were (1) to prepare and validate input datasets that are the foundation of cosmological analyses with DES, and (2) to prepare for value-added characterization of Rubin Observatory commissioning data to inform early operations and accelerate the realization of dark energy science from LSST data products. For DES, we assembled and curated cosmology-ready data releases that include value-added components such as enhanced photometric and astrometric calibrations, alternative source extraction algorithms, maps of the survey coverage and survey conditions, object classifications, object quality selections, galaxy shapes, and photometric redshifts. We used the galaxy clustering technique to validate the photometric redshift distributions of various galaxy samples to be used as lenses in combined studies of galaxy clustering and weak gravitational lensing. The galaxy clustering redshift analysis was enhanced by use of a larger sample of reference galaxies from the eBOSS spectroscopic survey that extends to higher redshifts. For LSST, we prepared for science validation studies of commissioning data aimed at dark energy science capability that extend beyond the normative system-level tests to be done by the Rubin Observatory Construction Project. We identified a set of proposed survey strategies and candidate target fields that could be observed during the commissioning period to enhance science validation activities related to studies of dark energy.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗