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At least 91 records · Page 5

Template Matching Used for Small Body Optical Navigation with Poorly Detailed Objects

Object and template matching becomes difficult when an image lacks detail. This is particularly worrisome when typical matching techniques, cross-correlation, log-polar mapping, and key point matching fail. Work herein describes a formulation that identifies objects of interest, estimates the affine transformation between a template object and scene using Principal Component Analysis (PCA), and provides a fit value for the objects and template incorporating Hu's Moments. The algorithm presented is tested on synthetic images and images obtained from the OSIRIS-REx mission while the spacecraft was approaching its target, Bennu. Results for the current formulation show that, with the presence of large-scale variations and rotation, the fitting scheme performs well when compared with other techniques.

Lyzhoft, Joshua R.↗

A New Discrete Wavelength BUV Algorithm for Consistent Volcanic SO2 Retrievals from Multiple Satellite Missions

This paper describes a new discrete wavelength algorithm developed for retrieving volcanic sulfur dioxide (SO2) vertical column density (VCD) from UV observing satellites. The Multi-Satellite SO2 algorithm (MS_SO2) simultaneously retrieves column densities of sulfur dioxide, ozone, and Lambertian effective reflectivity (LER) and its spectral dependence. It is used operationally to process measurements from the heritage Total Ozone Mapping Spectrometer (TOMS) onboard NASA's Nimbus-7 satellite (N7/TOMS: 1978-1993) and from the current Earth Polychromatic Imaging Camera (EPIC) onboard Deep Space Climate Observatory (DSCOVR: 2015-) from the Earth-Sun Lagrange (L1) orbit. Results from MS_SO2 algorithm for several volcanic cases were assessed using the more sensitive principal component analysis (PCA) algorithm. The PCA is an operational algorithm used by NASA to retrieve SO2 from hyperspectral UV spectrometers, such as the Ozone Monitoring Instrument (OMI) onboard NASA's Earth Observing System Aura satellite and Ozone Mapping and Profiling Suite (OMPS) onboard NASA-NOAA Suomi National Polar Partnership (SNPP) satellite. For this comparative study, the PCA algorithm was modified to use the discrete wavelengths of the Nimbus-7/TOMS instrument, described in Sect. S1 of the Supplement. Our results demonstrate good agreement between the two retrievals for the largest volcanic eruptions of the satellite era, such as the 1991 Pinatubo eruption. To estimate SO2 retrieval systematic uncertainties, we use radiative transfer simulations explicitly accounting for volcanic sulfate and ash aerosols. Our results suggest that the discrete-wavelength MS_SO2 algorithm, although less sensitive than hyperspectral PCA algorithm, can be adapted to retrieve volcanic SO2 VCDs from contemporary hyperspectral UV instruments, such as OMI and OMPS, to create consistent, multi-satellite, long-term volcanic SO2 climate data records.

Bradford L Fisher↗

Novel insights enabled by combining mouse muscle datasets from the Rodent Research-1 mission

Biological space experiments are often expensive and difficult to conduct. As such, it is critical to maximize the value of the data that is collected during these experiments. One way to do this is to combine multiple–previously separate–datasets. This can increase the number of replicates for the conditions of interest (and hence statistical power), allow new multi-factor questions to be asked, and potentially highlight new patterns that otherwise would not have been identified from single-dataset studies. However, the process of combining datasets introduces noise due to inherent technical variations between experiments. To better understand the insights that can be gained from multi-dataset analyses and the problems that may arise from joining multiple datasets, several mouse muscle RNA-Seq datasets from the Rodent Research-1 mission were first selected. Then, using the R package DESeq2, principal component analysis (PCA) plots and differentially expressed gene (DEG) lists between ground and flight muscle samples were generated for individual datasets and for different pairwise combinations of datasets. Several new DEGs were identified in the combined datasets, and patterns in the PCA plots were affected depending on which datasets were joined. Understanding the results of this work will be critical for future studies that seek to perform multi-dataset analyses.

spaceflight↗

Radiometric approach for the detection of picophytoplankton assemblages across oceanic fronts

Cell abundances of Prochlorococcus, Synechococcus, and autotrophic picoeukaryotes were estimated in surface waters using principal component analysis (PCA) of hyperspectral and multispectral remote-sensing reflectance data. This involved the development of models that employed multilinear correlations between cell abundances across the Atlantic Ocean and a combination of PCA scores and sea surface temperatures. The models retrieve high Prochlorococcus abundances in the Equatorial Convergence Zone and show their numerical dominance in oceanic gyres, with decreases in Prochlorococcus abundances towards temperate waters where Synechococcus flourishes, and an emergence of picoeukaryotes in temperate waters. Fine-scale in-situ sampling across ocean fronts provided a large dynamic range of measurements for the training dataset, which resulted in the successful detection of fine-scale Synechococcus patches. Satellite implementation of the models showed good performance (R(exp 2) > 0.50) when validated against in-situ data from six Atlantic Meridional Transect cruises. The improved relative performance of the hyperspectral models highlights the importance of future high spectral resolution satellite instruments, such as the NASA PACE mission’s Ocean Color Instrument, to extend our spatiotemporal knowledge about ecologically relevant phytoplankton assemblages.

Priscila Kienteca Lange↗

Physical and statistical modeling of Saturn's troposphere

We analyze the 5.2-pm spectra of Saturn by utilizing two independent methods: (a) physical models based on the relevant atmospheric parameters and (b) statistical analysis, based on principal components analysis (PCA), to determine the influence of the variation of phosphine and the opacity of clouds deep within Saturn's atmosphere to understand the dynamics in its atmosphere.

Saturn↗

Predicting the Seawater Chemistry of an Ocean World Using Machine Learning on Isotopic Measurements of Volatile CO2

Introduction: Given the long time intervals required for data transmission to and from ocean worlds targets, low bandwidth for data transmission, time required for data processing and analysis, and potentially extreme radiation environments (e.g., Europa), it is clear that ocean worlds missions will need more autonomous flight instruments and software in order to achieve established science goals. Protracted time intervals for data analysis (e.g., Europa Lander) strongly motivates the development of rapid, consistent and streamlined methods for interpreting data from flight mass spectrometers to e.g., determine how mass spectra from a plume or surface liquid/ice relates to the surface/subsurface. Since mass spectrometry also has the potential to correctly identify biosignatures[1], it is imperative that such methods for interpreting data are consistent and accurate. We used 848 isotope ratio mass spectra from laboratory analyses of CO2 that interacted with ocean worlds-relevant seawaters as a ‘training’ dataset for ‘unsupervised’ machine learning. In unsupervised learning, characteristics of the data are not labeled or linked, and any similarities found only result from the neural network. CO2 isotopologues analyzed for this dataset mimic the remote measurements of CO2 by a flight mass spectrometer, and are detailed in Theiling [2]. From this dataset, we used measured features of the spectra, such as retention time, intensity, and (isotopologue) mass ratios as inputs for our autoencoder neural network. Our neural network was trained to find similarities in these and other spectral features for seawaters of a particular composition and amount of initial CO2. Successful training then created an output of these similarities for various seawaters, which included MgSO4, Na2SO4, NaCl, MgCl2, KCl, and NaHCO3, and combinations of these salts. We then applied dimensionality reduction techniques such as Principal Component Analysis (PCA), T-Distributed Stochastic Neighbor Embedding (TSNE), and Uniform Manifold Approximation and Projection (UMAP) to demonstrate latent data features as a two-dimensional projection in a unitless, high-dimensional space. In this projection, a data point represents the combined effect of spectral features such as intensity, retention time, and isotope ratio. Our initial UMAP demonstrates data clustering (organization of the data by the neural network) based on the amount of CO2 that had initially interacted with each seawater. Further training using more ‘supervised’ learning techniques demonstrate strong clustering of preliminary data based on initial CO2 concentration, seawater chemical composition, and ionic strength (salinity). Our preliminary work therefore suggests that machine learning has the potential to identify compositional variants of an ocean world seawater based on mass spectra from volatile CO2 measurements. Acknowledgments: This work was funded through a Strategic Task Group at NASA Goddard Space Flight Center. The training dataset was collected through funding from the Oklahoma Space Grant Consortium. References: [1] Pappalardo, R. et al. (2013) Astrobiology, 13, 740–773. [2] Theiling (2020) Icarus, 114216.

Europa↗

Statistical Analysis of Factors Riving Surface Ozone Variability over Continental South Africa

Statistical relationships between surface ozone (O3) concentration, precursor species and meteorological conditions in continental South Africa were examined from data obtained from measurement stations in north-eastern South Africa. Three multivariate statistical methods were applied in the investigation, i.e. multiple linear regression (MLR), principal component analysis (PCA) and –regression (PCR), and generalised additive model (GAM) analysis. The daily maximum 8-h moving average O3 concentrations were considered in these statistical models (dependent variable). MLR models indicated that meteorology and precursor species concentrations are able to explain ~50% of the variability in daily maximum O3 levels. MLR analysis revealed that atmospheric carbon monoxide (CO), temperature and relative humidity were the strongest factors affecting the daily O3 variability. In summer, daily O3 variances were mostly associated with relative humidity, while winter O3 levels were mostly linked to temperature and CO. PCA indicated that CO, temperature and relative humidity were not strongly collinear. GAM also identified CO, temperature and relative humidity as the strongest factors affecting the daily variation of O3. Partial residual plots found that temperature, radiation and nitrogen oxides most likely have a non-linear relationship with O3,while the relationship with relative humidity and CO is probably linear. An inter-comparison between O3 levels modelled with the three statistical models compared to measured O3 concentrations showed that the GAM model offered a slight improvement over the MLR model. These findings emphasise the critical role of regional-scale O3 precursors coupled with meteorological conditions in daily variances of O3 levels in continental South Africa.

multiple linear regression (MLR)↗

Model-Independent Time-Delay Interferometry Based on Principal Component Analysis

With a laser interferometric gravitational-wave detector in separate free flying spacecraft, the only way to achieve detection is to mitigate the dominant noise arising from the frequency fluctuations of the lasers via postprocessing. The noise can be effectively filtered out on the ground through a specific technique called time-delay interferometry (TDI), which relies on the measurements of time-delays between spacecraft and careful modeling of how laser noise enters the interferometric data. Recently, this technique has been recast into a matrix-based formalism by several authors, offering a different perspective on TDI, particularly by relating it to principal component analysis (PCA). In this work, we demonstrate that we can cancel laser frequency noise by directly applying PCA to a set of shifted data samples, without any prior knowledge of the relationship between single-link measurements and noise, nor time-delays. We show that this fully data-driven algorithm achieves a gravitational-wave sensitivity similar to classic TDI.

Quentin Baghi↗

MSL Telecom Automated Anomaly Detection

The Mars Science Laboratory (MSL) Telecom Operations Team at the Jet Propulsion Laboratory (JPL) has implemented a machine learning system in order to automate the anomaly detection process as a part of daily operations. Machine learning enables reliable detection of anomalies in Telecom-related telemetry and automated reporting of Telecom subsystem status, resulting in an 90% reduction in team workload and improved anomaly detection reliability. At present, machine learning methods are used to detect: 1. Anomalous long-term trends in telemetry data 2. Anomalous time-domain evolution of telemetry values Both types of anomalies pose their own unique challenges that are addressed in different ways. In the first case, long term trending of daily minima, maximum, and mean telemetry values in temperatures, currents, voltages, and radio frequency (RF) power levels is used in addition to hard threshold safety checks to look for changes in long-term equipment health and performance. Long-term trending methods allow for ordinary seasonal variations in these quantities caused by temperature changes over the course of the Martian year while allowing operators to determine whether current performance remains in line with historical values from previous years. Changes in long-term trends can provide important insights into the health and status of the rover's on-board systems as well as valuable early warning if subtle degradation begins to take hold. But while trending of daily statistics is valuable, it does not detect anomalies in the short-term time evolution of data over the course of minutes or hours during a day, and this task is handled with short-term shape analysis. Principal components analysis (PCA) has been found to provide robust detection of short-term anomalies, and several examples of the use of PCA to detect actual anomalous events will be provided here. In using PCA, we use both the percentage of explained variance and also a log likelihood test on the PCA expansion coefficients to flag telemetry data for human review. Previous work in the field of spacecraft anomaly detection includes [1] for MSL and [2] for some other JPL missions.

Mukai, Ryan↗

Reducing OCO-2 regional biases through novel 3D cloud, albedo, and meteorology estimation

This ROSES project tests the addition of novel 3D cloud, albedo fine structure, temperature and water vapor profile to the OCO-2 retrieved system. All new parameters have been added to the ReFRACtor / TROPESS system for testing. Currently, we are comparing 3d-cloud retrievals from OCO-2 radiances to the MODIS-derived EAR3T cloud properties. The water and temperature profile retrievals have been implemented and result in improved XCO2 comparisons to TCCON, and now are implementing principal-component analysis (PCA) to reduce the number of parameters added. We are also studying ECOSTRESS spectral library, AVIRIS-ng, OCO-2 spectral residuals, and albedo retrievals with additional parameters to determine the appropriate characterization of albedo. We find that the current albedo parametrization (2nd order polynomial) is adequate for ocean and vegetation, but not adequate for soil and rock observations.

Reducing OCO-2↗

Transcriptomics-based Machine Learning Analysis Predicts Space-Exposed Murine Livers

Limited sample sizes, high data dimensionality, and sensitivity to technical and biological variability of next generation sequencing (NGS), typically limits machine learning (ML) approaches in spaceflight studies that include radiation effects. However, pooling smaller studies while addressing intra- and inter-study variabilities allows for ML predictive modeling. Here, integration methods were applied to whole transcriptome shotgun sequencing (RNA-seq) data from six mouse liver GeneLab datasets (GLDS) (n ranging from 6 to 39 samples) from with a total of 81 spaceflight and ground-control samples to determine top features (i.e. genes) relevant to spaceflight including the effect of radiation exposure. RNASeq counts were normalized for each study, then merged and scaled across all datasets. Data dimensionality was reduced using a minimum redundancy maximum relevance (MRMR) methodology. Redundancy and relevance were computed using the Pearson correlation and F-statistic, respectively. The top 100 MRMR features were used to predict spaceflight vs. ground-control samples using Random Forest (RF), Support Vector Machine (SVM), and Linear Discriminant Analysis (LDA) classifiers with 5-fold cross validation (CV). Principal component analysis (PCA) on the complete feature set versus the MRMR features shows separation between spaceflight samples and ground controls (Figure 1A). The ML-based gene sets were compared against differential gene expression results obtained with DESeq2 from individual GLDS. Using all features or randomly sampled subsets at matching set sizes with MRMR, a maximum classifier accuracy of 69% was shown on the test set over 5 folds. For all classifiers, CV training using at least the top 30 MRMR genes show minimum 89% accuracy and 0.95 AUC value on the test set over 5 folds (Figure 1B). Baseline set analysis on differentially expressed genes (DEGs) identified using padj ≤ 0.05 show 295 DEGs that overlap at least two studies and 13 DEGs that overlap three studies (Figure 1C). Set analysis between the top 100 MRMR features and the DEGs showed 47 genes that overlap at least one study and 24 genes that overlap two studies. Over-representation analysis showed overlapping biological processes related to fatty acid and lipid metabolism which may indicate these processes in the response to spaceflight stressors. MRMR feature selection for the selected ML methods improve performance relative to a classifier built on all features or randomly sampled subsets. Permutation feature importance within the decorrelated MRMR features showed concordance in feature ranking between ML methods. A challenge of applying ML methods across heterogeneous NGS data is accounting for signal:noise. Here, signal validation across studies was shown by intersecting sets between top MRMR genes and DEGs from DESeq2 analysis. Non-intersecting sets introduce opportunity to explore genes relevant to differentiating space flight exposed groups and implementing ML methods across existing NGS datasets may overcome sample size limitations.

Machine Learning↗

Transcriptomics-based Machine Learning (ML) Analysis Predicts Space-Exposed Murine Livers

Limited sample sizes, high data dimensionality, and sensitivity to technical and biological variability of next generation sequencing (NGS), typically limits machine learning (ML) approaches in spaceflight studies that include radiation effects. However, pooling smaller studies while addressing intra- and inter-study variabilities allows for ML predictive modeling. Here, integration methods were applied to whole transcriptome shotgun sequencing (RNA-seq) data from six mouse liver GeneLab datasets (GLDS) (n ranging from 6 to 39 samples) from with a total of 81 spaceflight and ground-control samples to determine top features (i.e. genes) relevant to spaceflight including the effect of radiation exposure. RNASeq counts were normalized for each study, then merged and scaled across all datasets. Data dimensionality was reduced using a minimum redundancy maximum relevance (MRMR) methodology. Redundancy and relevance were computed using the Pearson correlation and F-statistic, respectively. The top 100 MRMR features were used to predict spaceflight vs. ground-control samples using Random Forest (RF), Support Vector Machine (SVM), and Linear Discriminant Analysis (LDA) classifiers with 5-fold cross validation (CV). Principal component analysis (PCA) on the complete feature set versus the MRMR features shows separation between spaceflight samples and ground controls (Figure 1A). The ML-based gene sets were compared against differential gene expression results obtained with DESeq2 from individual GLDS. Using all features or randomly sampled subsets at matching set sizes with MRMR, a maximum classifier accuracy of 69% on the test set over 5 folds. For all classifiers, CV training using at least the top 30 MRMR genes show minimum 89% accuracy and 0.95 AUC value on the test set over 5 folds (Figure 1B). Baseline set analysis on differentially expressed genes (DEGs) identified using padj ≤ 0.05 show 295 DEGs that overlap at least two studies and 13 DEGs that overlap three studies (Figure 1C). Set analysis between the top 100 MRMR features and the DEGs showed 47 genes that overlap at least one study and 24 genes that overlap two studies. Over-representation analysis showed overlapping biological processes related to fatty acid and lipid metabolism which may indicate these processes in the response to spaceflight stressors. MRMR feature selection for the selected ML methods improve performance relative to a classifier built on all features or randomly sampled subsets. Permutation feature importance within the decorrelated MRMR features showed concordance in feature ranking between ML methods. A challenge of applying ML methods across heterogeneous NGS data is accounting for signal:noise. Here, signal validation across studies was shown by intersecting sets between top MRMR genes and DEGs from DESeq2 analysis. Non-intersecting sets introduce opportunity to explore genes relevant to differentiating space flight exposed groups and implementing ML methods across existing NGS datasets may overcome sample size limitations.

Machine Learning↗

Continuing Global SO2 Data Record from OMI and SNPP/OMPS to JPSS-1/NOAA-20/OMPS

Since 2004, the Ozone Monitoring Instrument (OMI) aboard NASA's Earth Observing System (EOS) Aura spacecraft has been providing global observations that help to constrain the sources, transport, and environmental impacts of anthropogonic and volcanic SO2. The OMI SO2 data record is now being continued with the NASA/NOAA Suomi National Polar-orbiting Partnership (SNPP)/Ozone Mapping and Profiler Suite (OMPS) launched in 2011. Both OMI and SNPP/OMPS SO2 products are produced with the Goddard principal component analysis (PCA) based spectral fitting algorithm. This data-driven technique inherently accounts for various instrumental factors and geophysical interferences, leading to high-quality, consistent SO2 retrievals between OMI and SNPP/OMPS, despite coarser spectral (~0.5 nm vs. ~1 nm) and spatial (13  24 km2 vs. 50  50 km2 at nadir) resolution for the latter. In this presentation, we describe our effort to continue the long-term SO2 climate data record using measurements from the Joint Polar Satellite System (JPSS)-1/NOAA-20 (N20)/OMPS. Launched in 2017, the N20/OMPS is a follow-on for SNPP/OMPS but features a spatial resolution (17  13 km2) that is comparable with OMI. We will discuss our progress implementing the PCA SO2 algorithm with N20/OMPS, especially algorithmic improvements to further reduce retrieval noise and bias for large volcanic eruptions. We will present examples for both continuously emitting sources (e.g., power plants in India and oil/gas fields in the Middle East) and volcanic eruptions (e.g., Raikoke in 2019). We will also compare N20/OMPS SO2 retrievals with OMI and SNPP/OMPS, as well as other instruments such as the ESA Copernicus Sentinel-5 Precursor (S5P)/TROPOspheric Monitoring Instrument (TROPOMI). To assess the ability of N20/OMPS to monitor and quantify SO2 sources, we will run the level 2 retrievals through a top-down emission algorithm to estimate the SO2 emission strengths for a number of point sources. Finally, we will outline our plan for further algorithm refinement and public data release.

SO2↗

Variability in Mt. Sharp Group Bedrock as Seen By ChemCam Passive and Active Spectra

The Curiosity rover landed in Gale crater in August 2012 and has since been travelling up the central sedimentary mound known as Mt. Sharp. The ChemCam instrument on Curiosity was designed primarily for the use of Laser Induced Breakdown Spectroscopy (LIBS), where a laser ablates a small amount of material from the target and the spectrum of the resulting plasma yields elemental abundance data. ChemCam’s three spectrometers range from 240-905 nm and can also take passive spectra (without the use of the laser). The spectral range ChemCam passive spectra observe is sensitive to charge-transfer and crystal field absorptions related to iron-bearing minerals. In the first 2934 sols of Curiosity’s mission, 9,400 passive spectra were taken of bedrock targets in Mt. Sharp’s Murray and Carolyn Shoemaker formations. We examine these spectra using spectral slope/ratio and band depth calculations as well as Principal Component Analysis (PCA). For the first time, paired passive spectra and LIBS elemental abundances are compared on a large scale. Finally, CheMin data are compared to ChemCam passive observations to understand sources of spectral variability.

H T Manelski↗

Transcriptomics-based Machine Learning Analysis Predicts Space-Exposed Murine Livers

Limited sample sizes, high data dimensionality, and sensitivity to technical and biological variability of next generation sequencing (NGS), typically limits machine learning (ML) approaches in spaceflight studies that include radiation effects. However, pooling smaller studies while addressing intra- and inter-study variabilities allows for ML predictive modeling. Here, integration methods were applied to whole transcriptome shotgun sequencing (RNA-seq) data from six mouse liver GeneLab datasets (GLDS) (n ranging from 6 to 39 samples) from with a total of 81 spaceflight and ground-control samples to determine top features (i.e. genes) relevant to spaceflight including the effect of radiation exposure. RNASeq counts were normalized for each study, then merged and scaled across all datasets. Data dimensionality was reduced using a minimum redundancy maximum relevance (MRMR) methodology. Redundancy and relevance were computed using the Pearson correlation and F-statistic, respectively. The top 100 MRMR features were used to predict spaceflight vs. ground-control samples using Random Forest (RF), Support Vector Machine (SVM), and Linear Discriminant Analysis (LDA) classifiers with 5-fold cross validation (CV). Principal component analysis (PCA) on the complete feature set versus the MRMR features shows separation between spaceflight samples and ground controls (Figure 1A). The ML-based gene sets were compared against differential gene expression results obtained with DESeq2 from individual GLDS. Using all features or randomly sampled subsets at matching set sizes with MRMR, a maximum classifier accuracy of 69% was shown on the test set over 5 folds. For all classifiers, CV training using at least the top 30 MRMR genes show minimum 89% accuracy and 0.95 AUC value on the test set over 5 folds (Figure 1B). Baseline set analysis on differentially expressed genes (DEGs) identified using padj ≤ 0.05 show 295 DEGs that overlap at least two studies and 13 DEGs that overlap three studies (Figure 1C). Set analysis between the top 100 MRMR features and the DEGs showed 47 genes that overlap at least one study and 24 genes that overlap two studies. Over-representation analysis showed overlapping biological processes related to fatty acid and lipid metabolism which may indicate these processes in the response to spaceflight stressors. MRMR feature selection for the selected ML methods improve performance relative to a classifier built on all features or randomly sampled subsets. Permutation feature importance within the decorrelated MRMR features showed concordance in feature ranking between ML methods. A challenge of applying ML methods across heterogeneous NGS data is accounting for signal:noise. Here, signal validation across studies was shown by intersecting sets between top MRMR genes and DEGs from DESeq2 analysis. Non-intersecting sets introduce opportunity to explore genes relevant to differentiating space flight exposed groups and implementing ML methods across existing NGS datasets may overcome sample size limitations.

Machine Learning↗

NASA GeneLab Multi-study Visualization Portal

NASA GeneLab has helped advance the field of Space Biology by providing a public repository where researchers can store, share, analyze and visualize the results of space flight related omics experiments. The GeneLab data visualization portal allows any user, regardless of bioinformatics knowledge or access to computational resources, to interact with the experimental data, draw their own conclusions, and gain insights about the effects of space on living systems. These tools help democratize scientific research and foster the NASA Open Science initiative. The new multi-study feature of the GeneLab visualization platform allows users to mine study metadata from RNA sequencing (RNA-seq) experiments to identify samples of interest by filtering datasets based on organism, tissue, assay technology type, and/or factor. Once samples are selected from multiple datasets, users can combine and normalize the sample data, then utilize the visualization displays, including Principal Component Analysis (PCA) plots, to assess sample distributions. Finally, users can perform differential gene expression analysis on the combined data and visualize the results through PCA plots, Volcano plots, Pair plots, Heatmap, Ideogram and Gene Set Enrichment Analysis. All user-generated results and visualizations will be available for download. Here, we present a biological study using samples from multiple GeneLab RNA-seq datasets and analyzed using the multi-study visualization platform to demonstrate inter- and intra-study variability, as well as commonly differentially expressed genes between spaceflight and ground control conditions across datasets. This new feature opens a wide range of possibilities and opportunities for further development including combining other assay technology types and integration with batch effect correction techniques and machine learning applications. Overall, this tool allows users to increase the statistical power of individual experiments, validate hypothesis, identify patterns, and opens the door to new and exciting research.

space biology↗

Enabling Intelligent Data Downlink Prioritization of In-Situ Observations through Generalizable and Computationally Inexpensive Anomaly Detection

High-fidelity measurements of magnetic fields and other observed properties, such as energetic particle fluxes, are a necessary component to our understanding of the highly dynamic near-Earth space environment. As our desire to study smaller-scale phenomena such as shocks and dipolorizations has increased, we have been driven to take and telemeter measurements at higher cadences. Unfortunately, many missions are unable to downlink all their captured data due to the well-known data transmission bottleneck at the DSN. These missions must then prioritize their high-cadence data such that the most scientifically useful intervals are transmitted. One simple prioritization technique uses the spacecraft position to telemeter data from only the region of interest. Although easy to implement, this method does not leverage the available scientific data and can omit intervals of useful scientific data when they lie outside the region of interest. The Magnetospheric Multiscale Mission (MMS) uses mission-specific parameterization of several data products to automatically prioritize scientifically useful intervals. Then, MMS verifies the automatically selected intervals by having a domain expert manually select intervals for downlink. The overall complexity required by this technique make it prohibitive for deployment on low-cost platforms (i.e., CubeSats) or on future missions featuring large constellations of satellites such as the Geospace Dynamics Constellation (GDC). We present preliminary results for a simple, generic, and data-driven method of downlink prioritization for magnetic field (and other) measurements. Specifically, Principal Components Analysis (PCA) and One-Class Support Vector Machines (OC-SVMs) are used to detect intervals containing anomalous activity, which can then be prioritized for subsequent downlink. The computational simplicity of this algorithm makes it an excellent candidate for implementation on spaceflight hardware, as well as provide generalizability to a broad range of missions and data products. Initial analysis of this technique has been performed using magnetic field measurements from the Magnetospheric Multiscale Mission and CASSIOP, where it automatically identified scientifically interesting intervals containing Alfvén waves and EMIC activity.

Matthew G. Finley↗

Global SO 2 Data Record from OMPS Instruments on the JPSS Constellation

NASA’s Earth Observing System (EOS) SO 2 climate data record (CDR) started in 2004, with the launch of the Aura/Ozone Monitoring Instrument (OMI) and is now being continued with the SNPP/Ozone Mapping and Profiler Suite (OMPS) launched in 2011. Both OMI and SNPP/OMPS SO 2 CDRs are produced with the Goddard principal component analysis (PCA) spectral fitting algorithm. An advantage of the data-driven PCA retrieval technique is that it enables highly consistent retrievals from different instruments, by inherently accounting for various instrumental factors. To further extend the EOS SO 2 CDR, we are implementing the PCA SO 2 retrieval algorithm with the L1B measurements from OMPS instruments flying on the Joint Polar Satellite System (JPSS) constellation. In this presentation, we will provide an update on our progress in NOAA-20 (launched in 2017) and NOAA-21 (launched in 2022) PCA SO2 retrievals. We will focus on our new NOAA-20/OMPS PCA SO 2 EOS continuity product, to be publicly released in fall of 2023. We will present statistical analyses on the quality of NOAA-20 PCA SO 2 product, including retrieval noise, biases over background areas, and long-term stability. We will compare our PCA SO 2 retrievals from NOAA-20 with those from OMI, SNPP/OMPS, and S5P/TROPOMI (TROPOspheric Monitoring Instrument) for anthropogenic sources as well as large volcanic plumes. We will also discuss the application of a new machine learning technique that helps to further reduce the noise of NOAA-20 SO 2 retrievals. In addition, we will present preliminary PCA SO 2 retrievals from NOAA-21/OMPS, including those from direct readout implementation for aviation disaster avoidance. Finally, we will share some first results applying the PCA algorithm to NASA’s geostationary TEMPO (Tropospheric Emissions: Monitoring of Pollution) instrument to obtain hourly, high resolution SO 2 data over North America.

SO2↗