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Diurnal leaf water potential on four tree species, San Lorenzo, Panama, 2020

This data package contains pre-dawn and diurnal leaf water potential (LWP) measured on four trees at the STRI San Lorenzo crane site between January and March 2020. These data were collected from four of the core trees instrumented for sap flux (Guatteria dumetorum, Miconia minutiflora, Terminalia amazonia,Vochysia ferruginea), with measurements made on a single tree on each day. For each tree, leaf samples were harvested from fully sunlit, top of canopy positions pre-dawn (06:00 local time), and then hourly for the subsequent 12 hours. Leaf water potential was measured on 6 - 10 leaves from each time point. Harvested leaves were stored in a cool humid bag in the dark for no more than 40 minutes before LWP was measured. These data were collected as part of a 2020 dry season campaign led by Brookhaven National Laboratory (BNL). Refer to related datasets for further sample details, and paired leaf mass area (LMA), survey gas exchange, and leaf chemistry data. The files included in this data package are in .csv format, and include one data file and three metadata files.

54 ENVIRONMENTAL SCIENCES↗

Sap flow data, Jan 2022-Dec 2022, Panama: PNM,BCI, and SLZ

Sap flow was monitored at three Panamanian sites: Parque Natural Metropolitano (PNM), Barro Colorado Island (BCI), and Bosque Protector San Lorenzo (SLZ), using a total of 54 G-20mm sap flow sensors. Raw output from the data logger connected to 54 sap flow sensors are converted from xxx.dat. to xxx.csv. files. The metadata file (E-field log_v1-1_PNM_BCI_SLZ_sapflow_2022.xls) has information on locations where the sensors were installed, and other installation/maintenance details. No data processing or QA/QC was done on the raw datasets except conversion of dat. files to csv. files. Processed datasets have been uploaded separately. Contact mizanur.rahman@pnnl.gov or nate.mcdowell@pnnl.gov if you need to use this dataset for additional information.

54 ENVIRONMENTAL SCIENCES↗

Panama Rainforest Changes with Experimental Drought (PaRChED): Initial Effects of Partial Throughfall Exclusion on Soil Dynamics in Lowland Forests Across Variation in Rainfall and Soil Fertility

Changes in rainfall are predicted across tropical regions, with effects on nutrient, water, and carbon cycling. This chapter summarizes results from the first two years of a throughfall exclusion experiment in four lowland Panamanian forests that span a 1,000-mm change in rainfall and variation in soil fertility. Soil respiration (i.e., soil carbon dioxide [CO2 ] flux) declined with throughfall exclusion, with a site*season interaction, and the radiocarbon age of respired carbon was older in exclusion versus control plots. The decline in soil CO2 flux could be related to reduced fine root production and soil microbial biomass. Microbial community composition also changed with throughfall exclusion in infertile soils, and soil nutrients accumulated more in exclusion versus control plots during the dry season. The net effects on soil carbon storage will depend on the relative strengths of these effects over time. Continued research could improve predictions of tropical forest-climate feedbacks with changes in precipitation.

54 ENVIRONMENTAL SCIENCES↗

Competing effects of soil fertility and toxicity on tropical greening

Tropical forests are expected to green up with increasing atmospheric CO 2 concentrations, but primary productivity may be limited by soil nutrient availability. However, rarely have canopy-scale measurements been assessed against soil measurements in the tropics. Here, we sought to assess remotely sensed canopy greenness against steep soil nutrient gradients across 50 1-ha mature forest plots in Panama. Contrary to expectations, increases in in situ extractable soil phosphorus (P) and base cations (K, Mg) corresponded to declines in remotely sensed mean annual canopy greenness (r 2 = 0.77– 0.85; p < 0.1), controlling for precipitation. The reason for this inverse relationship appears to be that litterfall also increased with increasing soil P and cation availability (r 2 = 0.88–0.98; p < 0.1), resulting in a decline in greenness with increasing annual litterfall (r 2 = 0.94; p < 0.1). As such, greater soil nutrient availability corresponded to greater leaf turnover, resulting in decreased greenness. However, these decreases in greenness with increasing soil P and cations were countered by increases in greenness with increasing soil nitrogen (N) (r 2 = 0.14; p < 0.1), which had no significant relationship with litterfall, likely reflecting a direct effect of soil N on leaf chlorophyll content, but not on litterfall rates. In addition, greenness increased with extractable soil aluminum (Al) (r 2 = 0.97; p < 0.1), but Al had no significant relationship with litterfall, suggesting a physiological adaptation of plants to high levels of toxic metals. Thus, spatial gradients in canopy greenness are not necessarily positive indicators of soil nutrient scarcity. Using a novel remote sensing index of canopy greenness limitation, we assessed how observed greenness compares with potential greenness. We found a strong relationship with soil N only (r 2 = 0.65; p < 0.1), suggesting that tropical canopy greenness in Panama is predominantly limited by soil N, even if plant productivity (e.g., litterfall) responds to rock-derived nutrients. Moreover, greenness limitation was also significantly correlated with fine root biomass and soil carbon stocks (r 2 = 0.62–0.71; p < 0.1), suggesting a feedback from soil N to canopy greenness to soil carbon storage. Altogether, these data point to the potential utility of a remote sensing product for assessing belowground properties in tropical ecosystems.

54 ENVIRONMENTAL SCIENCES↗

Homeostatic maintenance of nonstructural carbohydrates during the 2015-2016 El Niño drought across a tropical forest precipitation gradient

Non-structural carbohydrates (NSCs) are essential for maintenance of plant metabolism, and may be sensitive to both short- and long-term climatic variation. The NSC variation in NSCs in moist tropical forests has only rarely been studied, however, so regulation of NSCs in these systems is poorly understood. We measured foliar and branch NSC content in 23 tree species at three sites located across a large precipitation gradient in Panama during the 2015-2016 El Niño to examine how short- and long-term climatic variation impacts carbohydrate dynamics. Across all sites, leaf NSCs increased over diurnal time-periods. There was no significant difference in total NSCs over as the progression of the drought progressed (leaf p=0.32, branch p=0.30), nor across the rainfall gradient (leaf p=0.91, branch p=0.96). The Foliar soluble sugars decreased while starch increased :starch ratio did decrease over the duration of the dry period, suggesting greater partitioning of NSCs to storage than metabolism or transport as drought progressed. There was large variation across species at all sites, but total foliar NSCs were positively correlated with leaf mass per area, while branch sugars were positively related to leaf temperature and negatively correlated with daily photosynthesis and wood density. The NSC homeostasis across a wide range of conditions suggests that NSCs are an allocation priority in moist tropical forests.

Dickman, Lee T.↗

Implementation of rapid diagnostics assays for detection of histoplasmosis and cryptococcosis in central american people living with HIV

Abstract Objectives Histoplasmosis and cryptococcosis are important public health problems in people living with HIV (PLHIV) in Central America. Conventional laboratory assays, based on microscopy and culture, are not optimal for the diagnosis of either disease. However, antigen (Ag) assays are rapid and highly accurate for the diagnosis of these infections. Methods Laboratory surveillance of PLHIV was carried out in four hospitals in Panama, Honduras and Nicaragua, between 2015 and 2019. Detection of Histoplasma antigens in urine was performed by enzyme immunoassay (EIA), and Cryptococcus antigen detection in sera and cerebrospinal fluid specimens was performed by lateral flow assay (LFA). Results A total of 4,453 PLHIV with clinical suspicion of histoplasmosis ( n = 1,343) or cryptococcosis ( n = 3,110; 2,721 sera and 389 CSF) were tested. Of 1,343 patients suspected of having histoplasmosis, 269 (20%) were Histoplasma Ag positive. Of 3,110 patients tested using the Cryptococcus Ag assay, 329 (11%) were positive. Honduras reported the highest positivity rates (32% for Histoplasma Ag, and 16% for Cryptococcus Ag); Panama reported the largest number of patients testing positive using the Histoplasma Ag assay ( n = 201); and Nicaragua reported the largest number of patients testing positive using the Cryptococcus Ag assay ( n = 170). Conclusion Here, we show how the implementation of rapid diagnostics assays impacted case detection and was useful for the care of people with advanced HIV. Rapid and accurate diagnosis could reduce mortality associated with histoplasmosis and cryptococcosis in PLHIV.

Caceres, Diego H.↗

Leaf turgor loss point shapes local and regional distributions of evergreen but not deciduous tropical trees

Summary The effects of climate change on tropical forests will depend on how diverse tropical tree species respond to drought. Current distributions of evergreen and deciduous tree species across local and regional moisture gradients reflect their ability to tolerate drought stress, and might be explained by functional traits. We measured leaf water potential at turgor loss (i.e. ‘wilting point’; π tlp ), wood density (WD) and leaf mass per area (LMA) on 50 of the most abundant tree species in central Panama. We then tested their ability to explain distributions of evergreen and deciduous species within a 50 ha plot on Barro Colorado Island and across a 70 km rainfall gradient spanning the Isthmus of Panama. Among evergreen trees, species with lower π tlp were associated with drier habitats, with π tlp explaining 28% and 32% of habitat association on local and regional scales, respectively, greatly exceeding the predictive power of WD and LMA. In contrast, π tlp did not predict habitat associations among deciduous species. Across spatial scales, π tlp is a useful indicator of habitat preference for tropical tree species that retain their leaves during periods of water stress, and holds the potential to predict vegetation responses to climate change.

59 BASIC BIOLOGICAL SCIENCES↗

Soil properties and root characteristics across four lowland Panamanian forests from 0 - 1 m soil depths

Objectives:Fine roots significantly influence ecosystem-scale cycling of nutrients, carbon (C), and water, yet there is limited understanding of how fine root traits vary across and within tropical forests, some of Earth's most C-rich ecosystems. The biomass of fine roots can impact soil carbon storage, as root mortality is a primary source of new carbon to soils. A positive relationship has been observed between fine root biomass and soil carbon stocks in Panama (Cusack et al 2018). Beyond biomass, root characteristics like specific root length (SRL) could also influence soil carbon, as roots with higher SRL are less dense and thinner, potentially decomposing more easily or promoting soil aggregation. Understanding the effects of root morphology and tissue quality on soil carbon storage and with soil properties in general can improve predictions of landscape-scale carbon patterns. We aggregated new data of root biomass, morphology and nutrient content at 0-10 cm, 10-20 cm, 20-50 cm and 50-100 cm depth increments across four distinct lowland Panamanian forests and paired with already published datasets (Cusack et al 2018; Cusack and Turner 2020) of soil chemistry from the same sites and soil depths to explore relationship between soil carbon stocks and root characteristics.Datasets included:The datasets provided include .csv and .xlsx files for fine root characteristics and soil chemistry from four different forests across 0-10 cm, 10-20 cm, 20-50 cm, and 50-100 cm depth increments. Root characteristics include live fine root biomass, dead fine root biomass, coarse root biomass, specific root length, root diameter, root tissue density, specific root area, root %N, root %C, and root C/N ratio. Soil chemistry data includes total carbon (TC), dissolved organic carbon (DOC), bulk density, total phosphorus (TP), available phosphorus (AEM Pi), and various Mehlich-extractable elements such as aluminum, calcium, iron, potassium, manganese, phosphorus, and zinc. Nitrogen content measures include ammonium, nitrate, total dissolved nitrogen (TDN), dissolved inorganic nitrogen (DIN), and dissolved organic nitrogen (DON). The dataset also includes total exchangeable bases (TEB) and effective cation exchange capacity (ECEC) in both centimoles of charge per kilogram and micromoles of charge per gram. The soil chemistry data was obtained from Cusack et al (2018) and Cusack and Turner (2020) and paired with root characteristics data for the same depth increments and sites. Additionally, a .kml file is provided with coordinates for all 32 plots included in the study across four forests (n = 8 plots per site). Root data was averaged across these 8 plots per site and soil data was collected in one pit in each site. This dataset serves as baseline data before a throughfall exclusion experiment, Panama Rainforest Changes with Experimental Drying (PARCHED), was implemented. No special software is needed to open these files.

54 ENVIRONMENTAL SCIENCES↗

Team Massachusetts & Central America Solar Decathlon 2015 Final Technical Report

Our team was Team MASSCA (Massachusetts and Central America), which was a partnership of Western New England University (WNE) located in Massachusetts USA, The Technological University of Panama (UTP), and Central American Technological University (UNITEC) of Honduras. Together we had a group of 6 faculty members and approximately 30 undergraduate students. Our house is ‘The EASI’ House, which stands for Efficient, Affordable, Solar Innovation. The EASI house is rectangular with two bedrooms and one bath, and offers a total square footage of 680. Based on competition estimates, The EASI house costs roughly $121,000. The EASI house has a 5kW solar system. Faculty and students from all three institutions were represented at the competition in Irvine California. Team MASSCA did well considering this was our first entry in the Solar Decathlon competition. Team MASSCA won the following awards: First Place – Affordability Contest Second Place – Energy Balance Contest. The competition provided a great experience for our students (and faculty as well). This competition provided leadership, endurance, and technical knowledge/skills for our students, and was the single most important hands-on experience during their undergraduate years. We are extremely pleased with the awards we received. At the same time we have learned from our efforts and would do better if we were to compete in the future. Furthermore, as a result of our team’s Inter-Americas collaborative effort, UTP and WNE have partnered to form Team PANAMASS (PANAma and MASSachusetts) and have developed The 3 SMART House for the inaugural Solar Decathlon Latin America & Caribbean competition held in Colombia.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Laser network survey and orbit recovery

Simulations were performed for the anticipated GEOS-C laser network stations at Goddard, Bermuda, and Florida to predict how well survey and orbit will be recovered. Lasers were added one at a time at Grand Turk, Antigua, and Panama to estimate the contribution from these additional sites. Time tag biases of 50 microseconds, survey uncertainties of 10 meters in each coordinate, laser range biases and noise estimates of 20 cm each, and conventional gravity uncertainties were included in the simulations. The results indicate that survey can be recovered to about 1 meter and Grand Turk can be recovered better than Antigua or Panama. Reducing the probably pessimistic assumed time tag biases and gravity field uncertainties improves the results. Using these survey recovery estimates, the short arc GEOS-C satellite heights for altimeter intercomparison orbits can be recovered within the calibration area to better than the required two meters.

Berbert, J. H.↗

Broad band airborne water vapor radiometry

An infrared radiometer with a pass band of 280 to 520/cm (35.7 to 19.2 microns) is employed on the NASA Ames Research Center U-2 and C-141A aircraft in the measurement of water vapor burden in the upper troposphere and stratosphere. Coincidentally with altitude changes the water vapor mass mixing ratio is also inferred by observing the change in optical depth over a known vertical distance. Data from the December 1980 U-2 Water Vapor Exchange Experiment over the Panama Canal Zone add to the concept that overshooting cumulonimbus towers 'moisten' the lower stratosphere. The average mass mixing ratio in close proximity to or above such towers ranges from 3.5 to 5.0 parts per million above 18 km while the average background mass mixing ratio is only 2.9 parts per million. Generally the lowest background mixing ratios, averaging 2.6 parts per million occurred in the 18 to 21 km layer. For the same levels background Panama mass mixing ratios averaged from 1.0 to 3.0 parts per million higher than in middle latitudes.

Kuhn, P. M.↗

Seasonal variations of troposheric ozone at Natal, Brazil

An analysis of ozone measurements from Natal, Brazil (6 deg S, 35 W), with a focus on the seasonal behavior in the troposphere, is presented. The amplitude of seasonal cycle at Natal is much larger than at Panama (9 deg N), the only other tropical site for which similar data are available. Concentrations of ozone in the middle troposphere in the southern spring are unexpectedly high, 60-70 ppb, similar to values found at northern midlatitudes in summer, and larger by 20-30 ppb than values found at Panama and at southern midlatitudes. It is suggested that photochemical production of ozone associated with emissions of CO, hydrocarbons, and NO(x) from biomass burning may contribute significantly to the high values of ozone, but note that stratospheric intrusions could also play a role. The data available at present do not permit a definitive evaluation of the relative importance of these two sources of ozone. The data from Natal, in combination with recent aircraft and surface data, show that tropical ozone exhibits strong spatial and temporal inhomogeneities. The distribution of tropospheric ozone appears to be considerably more complex than the traditional view, which suggested a northern midlatitude maximum and north/-south hemispheric asymmetry. The seasonal cycle in the total column of ozone at Natal appears to mirror the behavior of the tropospheric contribution to the ozone column rather than the stratospheric contribution, and this may account for differences in the annual cycle of the total column at Natal versus other tropical locations.

Logan, J. A.↗

NASA Experiment on Tropospheric-Stratospheric Water Vapor Transport in the Intertropical Convergence Zone

The following six papers report preliminary results obtained from a field experiment designed to study the role of tropical cumulo-nimbus clouds in the transfer of water vapor from the troposphere to the stratosphere over the region of Panama. The measurements were made utilizing special NOAA enhanced IR satellite images, radiosonde-ozonesondes and a NASA U-2 aircraft carrying. nine experiments. The experiments were provided by a group of NASA, NOAA, industry, and university scientists. Measurements included atmospheric humidity, air and cloud top temperatures, atmospheric tracer constituents, cloud particle characteristics and cloud morphology. The aircraft made a total of eleven flights from August 30 through September 18, 1980, from Howard Air Force Base, Panama; the pilots obtained horizontal and vertical profiles in and near convectively active regions and flew around and over cumulo-nimbus towers and through the extended anvils in the stratosphere. Cumulo-nimbus clouds in the tropics appear to play an important role in upward water vapor transport and may represent the principal source influencing the stratospheric water vapor budget. The clouds provide strong vertical circulation in the troposphere, mixing surface air and its trace materials (water vapor, CFM's sulfur compounds, etc.) quickly up to the tropopause. It is usually assumed that large scale mean motions or eddy scale motions transport the trace materials through the tropopause and into the stratosphere where they are further dispersed and react with other stratospheric constituents. The important step between the troposphere and stratosphere for water vapor appears to depend upon the processes occurring at or near the tropopause at the tops of the cumulo-nimbus towers. Several processes have been sugested: (1) The highest towers penetrate the tropopause and carry water in the form of small ice particles directly into the stratosphere. (2) Water vapor from the tops of the cumulonimbus clouds is transported somehow through the tropopause, the vapor pressure being controlled by the temperature at the tops of the clouds; the dryness of the stratosphere could be explained if most of the transport occurs in connection with very high clouds in regions with very high and cold tropopause. (3) Cumulo-nimbus anvils act as terrestrial-radiation shields allowing the ice particle temperatures near cloud tops to cool radiatively below the supersaturation point; this cooling would cause a vapor deposition on the ice particles which will settle out and thus act as water scavengers. The experiment was designed to collect information on these detailed physical processes near and above the tropopause in order to assess their importance and the role they play in controlling stratospheric water vapor humidity.

Page, William A.↗

Data from a throughfall exclusion experiment: Fine root dynamics, morphology, chemistry, and AMF colonization across four lowland Panamanian forests

Fine roots regulate forest nutrient, carbon, and water cycling, yet their variation within and among tropical forests remains under-characterized. We quantified root productivity, disappearance, and stocks to 1 m using minirhizotron imaging, and we measured morphology, elemental composition [root carbon (C), root nitrogen (N), root phosphorus (P)], and arbuscular mycorrhizal fungi (AMF) colonization to 20 cm using ingrowth cores and sequential coring. Sampling took place in four distinct lowland Panamanian forests (32 plots; 8 per forest) from 2018 through 2022 under control and throughfall-exclusion (drought) treatments in the Panama Rainforest Changes with Experimental Drying (PARCHED) experiment.The dataset is presented as an Excel workbook with six tabs. The first tab is the data dictionary. Tab S1 contains ingrowth-core production and mortality, morphology and soil moisture. Tab S2 contains sequential-coring standing stocks with associated morphology and soil moisture. Tab S3 contains minirhizotron row data records to 1 m depth, including per-frame root length and diameter, normalized length metrics, and session timing. Tab S4 contains AMF colonization. Tab S5 contains fine-root chemistry at 0–10 cm, reporting %P, %C, %N, and C:N for samples collected via ingrowth cores and sequential-coring standing stocks. CSV mirrors for each tab are provided, and a KML file supplies coordinates for all 32 plots.Key variables span live and dead fine-root biomass (and coarse fractions where applicable), specific root length (SRL) and area (SRA), diameter, root tissue density (RTD), soil moisture, AMF colonization, root %N, %C, %P, and C:N, along with minirhizotron root length and diameter. Depth, season, treatment, and plot/site identifiers are included to support cross-tab integration and analysis from 0–100 cm (minirhizotron) and 0–20 cm (cores).Units are reported in-column and missing values are coded as NA. No special software is required to open or use the files (Excel, CSV, and KML compatible).

54 ENVIRONMENTAL SCIENCES↗

From the top: surface-derived carbon fuels greenhouse gas production at depth in a peatland

Tropical peatlands play an important role in global carbon (C) cycling, but little is known about factors driving carbon dioxide (CO 2 ) and methane (CH 4 ) emissions from these ecosystems, especially production in deeper soils. This study aimed to identify source material and processes regulating C emissions originating deep in three sites in a peatland on the Caribbean coast of Panama. We hypothesized that (1) surface-derived organic matter transported down the soil profile is the primary C source for respiration products at depth and that (2) high lignin content results in hydrogenotrophic methanogenesis as the dominant CH 4 production pathway throughout the profile. We used radiocarbon isotopic values to determine whether CO 2 and CH 4 at depth are produced from modern substrates or ancient deep peat, and we used stable C isotopes to identify the dominant CH 4 production pathway. Peat organic chemistry was characterized using 13 C solid-state nuclear magnetic resonance spectroscopy ( 13 C-NMR). We found that deep peat respiration products had radiocarbon signatures that were more similar to surface dissolved organic C (DOC) than deep solid peat. These results indicate that surface-derived organic matter was the dominant source for gas production at depth in this peatland, likely because of vertical transport of DOC from the surface to depth. Lignin, which was the most abundant compound (55 %–70 % of C), increased with depth across these sites, whereas other C compounds like carbohydrates did not vary with depth. These results suggest that there is no preferential decomposition of carbohydrates but instead preferential retention of lignin. Stable isotope signatures of respiration products indicated that hydrogenotrophic rather than acetoclastic methanogenesis was the dominant production pathway of CH 4 throughout the peat profile. These results show that deep C in tropical peatlands does not contribute greatly to surface fluxes of carbon dioxide, with compounds like lignin preferentially retained. This protection of deep C helps explain how peatland C is retained over thousands of years and points to the vulnerability of this C should anaerobic conditions in these wet ecosystems change.

54 ENVIRONMENTAL SCIENCES↗

Fine Root and Soil Organic Carbon Depth Distributions are Inversely Related Across Fertility and Rainfall Gradients in Lowland Tropical Forests

Humid tropical forests contain some of the largest soil organic carbon (SOC) stocks on Earth. Much of this SOC is in subsoil, yet variation in the distribution of SOC through the soil profile remains poorly characterized across tropical forests. We used a correlative approach to quantify relationships among depth distributions of SOC, fine root biomass, nutrients and texture to 1 m depths across 43 lowland tropical forests in Panama. The sites span rainfall and soil fertility gradients, and these are largely uncorrelated for these sites. We used fitted b parameters to characterize depth distributions, where b is a numerical index based on an asymptotic relationship, such that larger b values indicate greater concentrations of root biomass or SOC at depth in the profile. Root b values ranged from 0.82 to 0.95 and were best predicted by soil pH and extractable potassium (K) stocks. For example, the three most acidic (pH < 4) and Kpoor (< 20 g K m -2 ) soils contained 76 ± 5% of fine root biomass from 0 to 10 cm depth, while the three least acidic (pH > 6.0) and most K-rich (> 50 g K m -2 ) soils contained only 41 ± 9% of fine root biomass at this depth. Root b and SOC b values were inversely related, such that a large fine root biomass in surface soils corresponded to large SOC stocks in subsoils (50–100 cm). SOC b values were best predicted by soil pH and base cation stocks, with the three most base-poor soils containing 34 ± 8% of SOC from 50 to 100 cm depth, and the three most base-rich soils containing just 9 ± 2% of SOC at this depth. Nutrient depth distributions were not related to Root b or SOC b values. Here, these data show that large surface root biomass stocks are associated with large subsoil C stocks in strongly weathered tropical soils. Further studies are required to evaluate why this occurs, and whether changes in surface root biomass, as may occur with global change, could in turn influence SOC storage in tropical forest subsoils.

54 ENVIRONMENTAL SCIENCES↗