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At least 91 records · Page 5

Genetic diversity, population structure and anthracnose resistance response in a novel sweet sorghum diversity panel

Sweet sorghum is an attractive feedstock for the production of renewable chemicals and fuels due to the readily available fermentable sugars that can be extracted from the juice, and the additional stream of fermentable sugars that can be obtained from the cell wall polysaccharides in the bagasse. An important selection criterion for new sweet sorghum germplasm is resistance to anthracnose, a disease caused by the fungal pathogen Colletotrichum sublineolum. The identification of novel anthracnose-resistance sources present in sweet sorghum germplasm offers a fast track towards the development of new resistant sweet sorghum germplasm. We established a sweet sorghum diversity panel (SWDP) of 272 accessions from the USDA-ARS National Plant Germplasm (NPGS) collection that includes landraces from 22 countries and advanced breeding material, and that represents ~15% of the NPGS sweet sorghum collection. Genomic characterization of the SWDP identified 171,954 single nucleotide polymorphisms (SNPs) with an average of one SNP per 4,071 kb. Population structure analysis revealed that the SWDP could be stratified into four populations and one admixed group, and that this population structure could be aligned to sorghum’s racial classification. Results from a two-year replicated trial of the SWDP for anthracnose resistance response in Texas, Georgia, Florida, and Puerto Rico showed 27 accessions to be resistant across locations, while 145 accessions showed variable resistance response against local pathotypes. A genome-wide association study identified 16 novel genomic regions associated with anthracnose resistance. Four resistance loci on chromosomes 3, 6, 8 and 9 were identified against pathotypes from Puerto Rico, and two resistance loci on chromosomes 3 and 8 against pathotypes from Texas. In Georgia and Florida, three resistance loci were detected on chromosomes 4, 5, 6 and four on chromosomes 4, 5 (two loci) and 7, respectively. One resistance locus on chromosome 2 was effective against pathotypes from Texas and Puerto Rico and a genomic region of 41.6 kb at the tip of chromosome 8 was associated with resistance response observed in Georgia, Texas, and Puerto Rico. This publicly available SWDP and the extensive evaluation of anthracnose resistance represent a valuable genomic resource for the improvement of sorghum.

59 BASIC BIOLOGICAL SCIENCES↗

Integration of Complete Plasmids Containing Bont Genes into Chromosomes of Clostridium parabotulinum , Clostridium sporogenes , and Clostridium argentinense

At least 40 toxin subtypes of botulinum neurotoxins (BoNTs), a heterogenous group of bacterial proteins, are produced by seven different clostridial species. A key factor that drives the diversity of neurotoxigenic clostridia is the association of bont gene clusters with various genomic locations including plasmids, phages and the chromosome. Analysis of Clostridium sporogenes BoNT/B1 strain CDC 1632, C. argentinense BoNT/G strain CDC 2741, and Clostridium parabotulinum BoNT/B1 strain DFPST0006 genomes revealed bont gene clusters within plasmid-like sequences within the chromosome or nested in large contigs, with no evidence of extrachromosomal elements. A nucleotide sequence (255,474 bp) identified in CDC 1632 shared 99.5% identity (88% coverage) with bont/B1-containing plasmid pNPD7 of C. sporogenes CDC 67071; CDC 2741 contig AYSO01000020 (1.1 MB) contained a ~140 kb region which shared 99.99% identity (100% coverage) with plasmid pRSJ17_1 of C. argentinense BoNT/G strain 89G; and DFPST0006 contig JACBDK0100002 (573 kb) contained a region that shared 100% identity (99%) coverage with the bont/B1-containing plasmid pCLD of C. parabotulinum Okra. This is the first report of full-length plasmid DNA-carrying complete neurotoxin gene clusters integrated in three distinct neurotoxigenic species: C. parabotulinum, C. sporogenes and C. argentinense.

59 BASIC BIOLOGICAL SCIENCES↗

Impact breccias in carbonate rocks, Sierra Madera, Texas.

Two main types of deformational breccia occur in the Sierra Madera cryptoexplosion structure: monolithologic breccias composed of shattered rock of a single lithology and mixed breccias composed of rocks of several lithologies. Monolithologic breccias generally show no mineralogic signs of shock deformation, but a few samples are shatter-coned in a manner suggesting simultaneous formation of breccias and shatter cones. Mixed breccias, forming irregular, cross-cutting bodies, consistently contain moderately to highly shocked material, with mineralogic evidence of shock pressures of 50 kb to more than 200 kb, which, with evidence from the structural geometry of Sierra Madera and orientation of shatter cones, indicate an impact origin of the breccias. The mode of occurrence of the breccias, petrographic characteristics, and association with shock features are shared by breccias in many other cryptoexplosion structures in both carbonate and crystalline rock terranes, suggesting that such breccias have a common origin.

Wilshire, H. G.↗

Hardness of kamacite and shock histories of 119 meteorites.

Use of metallographic and X-ray diffraction techniques to study the shock histories of 119 iron and stony-iron meteorites, and measurement of the hardness of kamacite in these specimens and in artificially shocked-unannealed and annealed meteorite specimens. Shock increases kamacite hardness, but complications introduced by other physical and chemical properties of meteorites limit its utility as a shock indicator. About 50% of the meteorites studied show evidence for preterrestrial shock loading to pressures of greater than or equal to 130 kb, and 40% have not been shocked to such high pressures. The remaining meteorites have been heat-altered in such a way that their shock histories cannot be determined explicitly. These results, together with those obtained previously, indicate that the plurality, if not the majority, of all iron and stony-iron meteorites sampled by the earth were shocked to pressures of greater than or equal to 130 kb during preterrestrial collisions between asteroidal-sized objects.

Jain, A. V.↗

Elastic wave velocities and thermal diffusivities of Apollo 14 rocks.

The compressional- and shear-wave velocities of Apollo 14 lunar rocks 14311,50 and 14313,27 as functions of pressure up to 10 kb and the thermal diffusivity of sample 14311,50 over the temperature range 100 to 550 K have been measured. Both samples 14311 and 14313 are polymict fragmental rocks. The overall elastic and anelastic behavior of the Apollo 14 samples are similar to those of Apollo 11 and 12 samples; low velocity and low Q at pressures below 1 kb and rapid increase of velocity and Q with pressure are also typical of the Apollo 14 rocks. The available data of P- and S-wave velocities of lunar rocks show that Birch's law holds for the lunar rocks. The thermal diffusivity of a lunar rock in vacuum is found to be significantly lower than that in air at one atmospheric pressure.

Mizutani, H.↗

Shock-induced transition of quartz to stishovite.

The transformation of quartz to stishovite has been studied by X-ray and optical examination of a series of experimentally shock-loaded specimens of a quartz-copper mixture. Shock pressures of 68 to 260 kb and peak temperatures of 320 to 870 K were achieved. Stishovite was identified from quartz shock-loaded above 90 kb; the quantity increases with increasing pressure, but is not dependent on temperature. The formation of stishovite under shock conditions appears to be intimately related to a short-range order phase.

Kleeman, J. D.↗

Rock elastic properties and near-surface structure at Taurus-Littrow

Linear strain measurements are presented for two lunar basalts, 14310,82 and 71055,15 and one breccia, 15498,23 to 5 kb hydrostatic pressure. Compressional and shear acoustic velocities to 5 kb are also presented for the basalts, 14310,82 and 71055,15. These elastic properties, along with geological, seismological and rock mechanics considerations are consistent with a model of the structure of the Taurus-Littrow valley as follows, a thin surface regolith overlying a fractured mixture of basalt flows and ejecta material which in turn overlies a coherent breccia of highland ejecta debris.

Trice, R.↗

Methods of sequential estimation for determining initial data in numerical weather prediction

Numerical weather prediction (NWP) is an initial-value problem for a system of nonlinear differential equations, in which initial values are known incompletely and inaccurately. Observational data available at the initial time must therefore be supplemented by data available prior to the initial time, a problem known as meteorological data assimilation. A further complication in NWP is that solutions of the governing equations evolve on two different time scales, a fast one and a slow one, whereas fast scale motions in the atmosphere are not reliably observed. This leads to the so called initialization problem: initial values must be constrained to result in a slowly evolving forecast. The theory of estimation of stochastic dynamic systems provides a natural approach to such problems. For linear stochastic dynamic models, the Kalman-Bucy (KB) sequential filter is the optimal data assimilation method, for linear models, the optimal combined data assimilation-initialization method is a modified version of the KB filter.

Cohn, S. E.↗

The PDS-VAX intelligent plate scanning system of Trieste Astronomical Observatory

An intelligent subsystem for interfacing a PDS1010A digital microdensitometer to a DEC DR11W DMA 16 bit UNIBUS port in DEC VAX VMS environment was tested. The subsystem employs two MOTOROLA M68000 microprocessors with 128 KB data memory. The PDS primitives and the user defined high level scanning functions and preprocessing modules are loaded from the host computer into two 8 KB RAM memories in the microprocessors using a dedicated PDS control language. The subsystem is planned to employ a nonstandard photomultiplier electronics. Two design schemes were tested: (1) based on three amplifiers of gain 10 cascaded and multiplexed to a 12 bit AD converter, and (2) based on a single amplifier of gain 100 and two 14 bit AD converters.

Pucillo, M.↗

Retrograde, charnockite- gneiss relations in Southern India

The high-pressure charnockites (P = 8 to 9 Kb., T = 700 to 800 C CO2-rich fluid regime) of the Nilgiri hills show evidence of retrogression related to shear deformation within the Moyar and Bhavani shear belts. Two types of retrogression have been noticed: (1) retrogression along shear planes, and (2) retrogression along pegmatitic veins. Initial stages of retrogression results in the formation of irregular, 2 to 3 cm to one meter wide bleached zones with the removal of greasy grey color of charnockites. Minor structures which were earlier obscured in charnockites are clearly seen in bleached areas. In intensely shear areas, formation of highly fissile grey gneiss results often with the development of flaser and mylonitic structures. Fluid inclusion studies and geochemical investigations carried out for serial samples collected from charnockite to gneiss indicate following features: (1) there is a gradual decrease in density of CO2-rich fluids from 1.073 to 0.821 g/cu cm; (2) interestingly, in many sections of the gneisses studied, there is almost complete absence of fluid inclusions suggesting that they would have decrepitated (this may be due to large pressure difference (2 to 3 Kb.) created between the interior and exterior of the fluid inclusions); and (3) presence of mixed CO2-H2O inclusions were noticed.

Srikantappa, C.↗

The fundamentals and futures of removable mass storage alternatives

This article reflects my view of how the storage products have been introduced into the marketplace, where they came from, and where others will continue to come from in the future. My corporate goal is to be a resource for those searching for removable solutions to mass storage problems. My introduction to optical storage occurred a few months before signing a non-disclosure agreement with FileNet on 8 Aug. 1983. By 87 or 88, as the optical craze was getting more popular, I started looking for similar or complementary storage technologies. I am still looking and my research is constantly turning up new entrants into this field. Due to the scope of the coverage in this field, this article does not dwell on any single technology. The goal is to provide information that is not compiled in any other single source and focus on facts that are not commonly known. I have provided a few baseline assumptions to ensure the mathematical calculations remain consistent: (1) hard-copy 8.5 in x 11 in documents which are scanned at 200 dots per inch (dpi) and compressed at a ratio of 10:1 result in a document image which requires an average of 50 Kilobytes (KB) of storage; (2) an average ASCII page requires 2 KB of storage; (3) an average flle cabinet drawer can hold 2500 pieces of paper; (4) one GB of storage can hold an average of 20,000 document images (a reel of 6250 tape holds 180 Megabytes (MB)).

Kempster, Linda↗

Configuration-shape-size optimization of space structures by material redistribution

This project investigates the configuration-shape-size optimization (CSSO) of orbiting and planetary space structures. The project embodies three phases. In the first one the material-removal CSSO method introduced by Kikuchi and Bendsoe (KB) is further developed to gain understanding of finite element homogenization techniques as well as associated constrained optimization algorithms that must carry along a very large number (thousands) of design variables. In the CSSO-KB method an optimal structure is 'carved out' of a design domain initially filled with finite elements, by allowing perforations (microholes) to develop, grow and merge. The second phase involves 'materialization' of space structures from the void, thus reversing the carving process. The third phase involves analysis of these structures for construction and operational constraints, with emphasis in packaging and deployment. The present paper describes progress in selected areas of the first project phase and the start of the second one.

Vandenbelt, D. N.↗

A media maniac's guide to removable mass storage media

This paper addresses at a high level, the many individual technologies available today in the removable storage arena including removable magnetic tapes, magnetic floppies, optical disks and optical tape. Tape recorders represented below discuss logitudinal, serpantine, logitudinal serpantine,and helical scan technologies. The magnetic floppies discussed will be used for personal electronic in-box applications.Optical disks still fill the role for dense long-term storage. The media capacities quoted are for native data. In some cases, 2 KB ASC2 pages or 50 KB document images will be referenced.

Kempster, Linda S.↗

Computer Supported Indexing: A History and Evaluation of NASA's MAI System

Computer supported or machine aided indexing (MAI) can be categorized in multiple ways. The system used by the National Aeronautics and Space Administration's (NASA's) Center for AeroSpace Information (CASI) is described as semantic and computational. It's based on the co-occurrence of domain-specific terminology in parts of a sentence, and the probability that an indexer will assign a particular index term when a given word or phrase is encountered in text. The NASA CASI system is run on demand by the indexer and responds in 3 to 9 seconds with a list of suggested, authorized terms. The system was originally based on a syntactic system used in the late 1970's by the Defense Technical Information Center (DTIC). The NASA mainframe-supported system consists of three components: two programs and a knowledge base (KB). The evolution of the system is described and flow charts illustrate the MAI procedures. Tests used to evaluate NASA's MAI system were limited to those that would not slow production. A very early test indicated that MAI saved about 3 minutes and provided several additional terms for each document indexed. It also was determined that time and other resources spent in careful construction of the KB pay off with high-quality output and indexer acceptance of MAI results.

Silvester, June P.↗

Csa-19, a radiation-responsive human gene, identified by an unbiased two-gel cDNA library screening method in human cancer cells

A novel polymerase chain reaction (PCR)-based method was used to identify candidate genes whose expression is altered in cancer cells by ionizing radiation. Transcriptional induction of randomly selected genes in control versus irradiated human HL60 cells was compared. Among several complementary DNA (cDNA) clones recovered by this approach, one cDNA clone (CL68-5) was downregulated in X-irradiated HL60 cells but unaffected by 12-O-tetradecanoyl phorbol-13-acetate, forskolin, or cyclosporin-A. DNA sequencing of the CL68-5 cDNA revealed 100% nucleotide sequence homology to the reported human Csa-19 gene. Northern blot analysis of RNA from control and irradiated cells revealed the expression of a single 0.7-kilobase (kb) messenger RNA (mRNA) transcript. This 0.7-kb Csa-19 mRNA transcript was also expressed in a variety of human adult and corresponding fetal normal tissues. Moreover, when the effect of X- or fission neutron-irradiation on Csa-19 mRNA was compared in cultured human cells differing in p53 gene status (p53-/- versus p53+/+), downregulation of Csa-19 by X-rays or fission neutrons was similar in p53-wild type and p53-null cell lines. Our results provide the first known example of a radiation-responsive gene in human cancer cells whose expression is not associated with p53, adenylate cyclase or protein kinase C.

NASA Discipline Radiation Health↗

Sense and antisense transcripts of the developmentally regulated murine hsp70.2 gene are expressed in distinct and only partially overlapping areas in the adult brain

We have examined the spatial pattern of expression of a member of the hsp70 gene family, hsp70.2, in the mouse central nervous system. Surprisingly, RNA blot analysis and in situ hybridization revealed abundant expression of an 'antisense' hsp70.2 transcript in several areas of adult mouse brain. Two different transcripts recognized by sense and antisense riboprobes for the hsp70.2 gene were expressed in distinct and only partially overlapping neuronal populations. RNA blot analysis revealed low levels of the 2.7 kb transcript of hsp70.2 in several areas of the brain, with highest signal in the hippocampus. Abundant expression of a slightly larger (approximately 2.8 kb) 'antisense' transcript was detected in several brain regions, notably in the brainstem, cerebellum, mesencephalic tectum, thalamus, cortex, and hippocampus. In situ hybridization revealed that the sense and antisense transcripts were both predominantly neuronal and localized to the same cell types in the granular layer of the cerebellum, trapezoid nucleus of the superior olivary complex, locus coeruleus and hippocampus. The hsp70.2 antisense transcripts were particularly abundant in the frontal cortex, dentate gyrus, subthalamic nucleus, zona incerta, superior and inferior colliculi, central gray, brainstem, and cerebellar Purkinje cells. Our findings have revealed a distinct cellular and spatial localization of both sense and antisense transcripts, demonstrating a new level of complexity in the function of the heat shock genes.

NASA Discipline Developmental Biology↗

Internet Protocol Enhanced over Satellite Networks

Extensive research conducted by the Satellite Networks and Architectures Branch of the NASA Lewis Research Center led to an experimental change to the Internet's Transmission Control Protocol (TCP) that will increase performance over satellite channels. The change raises the size of the initial burst of data TCP can send from 1 packet to 4 packets or roughly 4 kilobytes (kB), whichever is less. TCP is used daily by everyone on the Internet for e-mail and World Wide Web access, as well as other services. TCP is one of the feature protocols used in computer communications for reliable data delivery and file transfer. Increasing TCP's initial data burst from the previously specified single segment to approximately 4 kB may improve data transfer rates by up to 27 percent for very small files. This is significant because most file transfers in wide-area networks today are small files, 4 kilobytes or less. In addition, because data transfers over geostationary satellites can take 5 to 20 times longer than over typical terrestrial connections, increasing the initial burst of data that can be sent is extremely important. This research along with research from other institutions has led to the release of two new Request for Comments from the Internet Engineering Task Force (IETF, the international body that sets Internet standards). In addition, two studies of the implications of this mechanism were also funded by NASA Lewis.

Ivancic, William D.↗

MicroShell Minimalist Shell for Xilinx Microprocessors

MicroShell is a lightweight shell environment for engineers and software developers working with embedded microprocessors in Xilinx FPGAs. (MicroShell has also been successfully ported to run on ARM Cortex-M1 microprocessors in Actel ProASIC3 FPGAs, but without project-integration support.) Micro Shell decreases the time spent performing initial tests of field-programmable gate array (FPGA) designs, simplifies running customizable one-time-only experiments, and provides a familiar-feeling command-line interface. The program comes with a collection of useful functions and enables the designer to add an unlimited number of custom commands, which are callable from the command-line. The commands are parameterizable (using the C-based command-line parameter idiom), so the designer can use one function to exercise hardware with different values. Also, since many hardware peripherals instantiated in FPGAs have reasonably simple register-mapped I/O interfaces, the engineer can edit and view hardware parameter settings at any time without stopping the processor. MicroShell comes with a set of support scripts that interface seamlessly with Xilinx's EDK tool. Adding an instance of MicroShell to a project is as simple as marking a check box in a library configuration dialog box and specifying a software project directory. The support scripts then examine the hardware design, build design-specific functions, conditionally include processor-specific functions, and complete the compilation process. For code-size constrained designs, most of the stock functionality can be excluded from the compiled library. When all of the configurable options are removed from the binary, MicroShell has an unoptimized memory footprint of about 4.8 kB and a size-optimized footprint of about 2.3 kB. Since MicroShell allows unfettered access to all processor-accessible memory locations, it is possible to perform live patching on a running system. This can be useful, for instance, if a bug is discovered in a routine but the system cannot be rebooted: Shell allows a skilled operator to directly edit the binary executable in memory. With some forethought, MicroShell code can be located in a different memory location from custom code, permitting the custom functionality to be overwritten at any time without stopping the controlling shell.

Werne, Thomas A.↗