Results for “Image-based modeling” — Page 5

DOE OSTI2023

Bridging Time-series Image Phenotyping and Functional–Structural Plant Modeling to Predict Adventitious Root System Architecture

Root system architecture (RSA) is an important measure of how plants navigate and interact with the soil environment. However, current methods in studying RSA must make tradeoffs between precision of data and proximity to natural conditions, with root growth in germination papers providing accessibility and high data resolution. Functional–structural plant models (FSPMs) can overcome this tradeoff, though parameterization and evaluation of FSPMs are traditionally based in manual measurements and visual comparison. Here, we applied a germination paper system to study the adventitious RSA and root phenology of Populus trichocarpa stem cuttings using time-series image-based phenotyping augmented by FSPM. We found a significant correlation between timing of root initiation and thermal time at cutting collection (P value = 0.0061, R 2 = 0.875), but little correlation with RSA. We also present a use of RhizoVision [1] for automatically extracting FSPM parameters from time series images and evaluating FSPM simulations. A high accuracy of the parameterization was achieved in predicting 2D growth with a sensitivity rate of 83.5%. This accuracy was lost when predicting 3D growth with sensitivity rates of 38.5% to 48.7%, while overall accuracy varied with phenotyping methods. Despite this loss in accuracy, the new method is amenable to high throughput FSPM parameterization and bridges the gap between advances in time-series phenotyping and FSPMs.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2023

When Spectral Modeling Meets Convolutional Networks: A Method for Discovering Reionization-era Lensed Quasars in Multiband Imaging Data

Over the last two decades, around 300 quasars have been discovered at z ≳ 6, yet only one has been identified as being strongly gravitationally lensed. We explore a new approach—enlarging the permitted spectral parameter space, while introducing a new spatial geometry veto criterion—which is implemented via image-based deep learning. We first apply this approach to a systematic search for reionization-era lensed quasars, using data from the Dark Energy Survey, the Visible and Infrared Survey Telescope for Astronomy Hemisphere Survey, and the Wide-field Infrared Survey Explorer. Our search method consists of two main parts: (i) the preselection of the candidates, based on their spectral energy distributions (SEDs), using catalog-level photometry; and (ii) relative probability calculations of the candidates being a lens or some contaminant, utilizing a convolutional neural network (CNN) classification. The training data sets are constructed by painting deflected point-source lights over actual galaxy images, to generate realistic galaxy–quasar lens models, optimized to find systems with small image separations, i.e., Einstein radii of θ E ≤ 1''. Visual inspection is then performed for sources with CNN scores of P lens > 0.1, which leads us to obtain 36 newly selected lens candidates, which are awaiting spectroscopic confirmation. These findings show that automated SED modeling and deep learning pipelines, supported by modest human input, are a promising route for detecting strong lenses from large catalogs, which can overcome the veto limitations of primarily dropout-based SED selection approaches.

High-redshift galaxies↗

NASA NTRS1987

Image based SAR product simulation for analysis

SAR product simulation serves to predict SAR image gray values for various flight paths. Input typically consists of a digital elevation model and backscatter curves. A new method is described of product simulation that employs also a real SAR input image for image simulation. This can be denoted as 'image-based simulation'. Different methods to perform this SAR prediction are presented and advantages and disadvantages discussed. Ascending and descending orbit images from NASA's SIR-B experiment were used for verification of the concept: input images from ascending orbits were converted into images from a descending orbit; the results are compared to the available real imagery to verify that the prediction technique produces meaningful image data.

Domik, G.↗

NASA NTRS1994

Interactive archives of scientific data

A focus on qualitative methods of presenting data shows that visualization provides a mechanism for browsing independent of the source of data and is an effective alternative to traditional image-based browsing of image data. To be generally applicable, such visualization methods, however, must be based upon an underlying data model with support for a broad class of data types and structures. Interactive, near-real-time browsing for data sets of interesting size today requires a browse server of considerable power. A symmetric multi-processor with very high internal and external bandwidth demonstrates the feasibility of this concept. Although this technology is likely to be available on the desktop within a few years, the increase in the size and complexity of achieved data will continue to exceed the capacity of 'worksation' systems. Hence, a higher class of performance, especially in bandwidth, will generally be required for on-demand browsing. A few experiments with differing digital compression techniques indicates that a MPEG-1 implementation within the context of a high-performance browse server (i.e., parallized) is a practical method of converting a browse product to a form suitable for network or CD-ROM distribution.

Treinish, Lloyd A.↗

NASA NTRS1999

Global Geometric Properties of Martian Impact Craters: A Preliminary Assessment Using Mars Orbiter Laser Altimeter (MOLA)

Impact craters on Mars have been used to provide fundamental insights into the properties of the martian crust, the role of volatiles, the relative age of the surface, and on the physics of impact cratering in the Solar System. Before the three-dimensional information provided by the Mars Orbiter Laser Altimeter (MOLA) instrument which is currently operating in Mars orbit aboard the Mars Global Surveyor (MGS), impact features were characterized morphologically using orbital images from Mariner 9 and Viking. Fresh-appearing craters were identified and measurements of their geometric properties were derived from various image-based methods. MOLA measurements can now provide a global sample of topographic cross-sections of martian impact features as small as approx. 2 km in diameter, to basin-scale features. We have previously examined MOLA cross-sections of Northern Hemisphere and North Polar Region impact features, but were unable to consider the global characteristics of these ubiquitous landforms. Here we present our preliminary assessment of the geometric properties of a globally-distributed sample of martian impact craters, most of which were sampled during the initial stages of the MGS mapping mission (i.e., the first 600 orbits). Our aim is to develop a framework for reconsidering theories concerning impact cratering in the martian environment. This first global analysis is focused upon topographically-fresh impact craters, defined here on the basis of MOLA topographic profiles that cross the central cavities of craters that can be observed in Viking-based MDIM global image mosaics. We have considered crater depths, rim heights, ejecta topologies, cross-sectional "shapes", and simple physical models for ejecta emplacement. To date (May, 1999), we have measured the geometric properties of over 1300 impact craters in the 2 to 350 km diameter size interval. A large fraction of these measured craters were sampled with cavity-center cross-sections during the first two months of MGS mapping. Many of these craters are included in Nadine Barlow's Catalogue of Martian Impact Craters, although we have treated simple craters smaller than about 7 km in greater detail than all previous investigations. Additional information is contained in the original extended abstract.

Garvin, J. B.↗

NASA NTRS2000

Photogrammetry Applied to Wind Tunnel Testing

In image-based measurements, quantitative image data must be mapped to three-dimensional object space. Analytical photogrammetric methods, which may be used to accomplish this task, are discussed from the viewpoint of experimental fluid dynamicists. The Direct Linear Transformation (DLT) for camera calibration, used in pressure sensitive paint, is summarized. An optimization method for camera calibration is developed that can be used to determine the camera calibration parameters, including those describing lens distortion, from a single image. Combined with the DLT method, this method allows a rapid and comprehensive in-situ camera calibration and therefore is particularly useful for quantitative flow visualization and other measurements such as model attitude and deformation in production wind tunnels. The paper also includes a brief description of typical photogrammetric applications to temperature- and pressure-sensitive paint measurements and model deformation measurements in wind tunnels.

Liu, Tian-Shu↗

NASA NTRS2000

An architecture for a brain-image database

The widespread availability of methods for noninvasive assessment of brain structure has enabled researchers to investigate neuroimaging correlates of normal aging, cerebrovascular disease, and other processes; we designate such studies as image-based clinical trials (IBCTs). We propose an architecture for a brain-image database, which integrates image processing and statistical operators, and thus supports the implementation and analysis of IBCTs. The implementation of this architecture is described and results from the analysis of image and clinical data from two IBCTs are presented. We expect that systems such as this will play a central role in the management and analysis of complex research data sets.

NASA Discipline Neuroscience↗

NASA NTRS2008

Mapping Snow Grain Size over Greenland from MODIS

This paper presents a new automatic algorithm to derive optical snow grain size (SGS) at 1 km resolution using Moderate Resolution Imaging Spectroradiometer (MODIS) measurements. Differently from previous approaches, snow grains are not assumed to be spherical but a fractal approach is used to account for their irregular shape. The retrieval is conceptually based on an analytical asymptotic radiative transfer model which predicts spectral bidirectional snow reflectance as a function of the grain size and ice absorption. The analytical form of solution leads to an explicit and fast retrieval algorithm. The time series analysis of derived SGS shows a good sensitivity to snow metamorphism, including melting and snow precipitation events. Preprocessing is performed by a Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm, which includes gridding MODIS data to 1 km resolution, water vapor retrieval, cloud masking and an atmospheric correction. MAIAC cloud mask (CM) is a new algorithm based on a time series of gridded MODIS measurements and an image-based rather than pixel-based processing. Extensive processing of MODIS TERRA data over Greenland shows a robust performance of CM algorithm in discrimination of clouds over bright snow and ice. As part of the validation analysis, SGS derived from MODIS over selected sites in 2004 was compared to the microwave brightness temperature measurements of SSM\I radiometer, which is sensitive to the amount of liquid water in the snowpack. The comparison showed a good qualitative agreement, with both datasets detecting two main periods of snowmelt. Additionally, MODIS SGS was compared with predictions of the snow model CROCUS driven by measurements of the automatic whether stations of the Greenland Climate Network. We found that CROCUS grain size is on average a factor of two larger than MODIS-derived SGS. Overall, the agreement between CROCUS and MODIS results was satisfactory, in particular before and during the first melting period in mid-June. Following detailed time series analysis of SGS for four permanent sites, the paper presents SGS maps over the Greenland ice sheet for the March-September period of 2004.

Lyapustin, Alexei↗

NASA NTRS2011

Planning Image-Based Measurements in Wind Tunnels by Virtual Imaging

Virtual imaging is routinely used at NASA Ames Research Center to plan the placement of cameras and light sources for image-based measurements in production wind tunnel tests. Virtual imaging allows users to quickly and comprehensively model a given test situation, well before the test occurs, in order to verify that all optical testing requirements will be met. It allows optimization of the placement of cameras and light sources and leads to faster set-up times, thereby decreasing tunnel occupancy costs. This paper describes how virtual imaging was used to plan optical measurements for three tests in production wind tunnels at NASA Ames.

Kushner, Laura Kathryn↗

NASA NTRS2011

Accelerated Adaptive MGS Phase Retrieval

The Modified Gerchberg-Saxton (MGS) algorithm is an image-based wavefront-sensing method that can turn any science instrument focal plane into a wavefront sensor. MGS characterizes optical systems by estimating the wavefront errors in the exit pupil using only intensity images of a star or other point source of light. This innovative implementation of MGS significantly accelerates the MGS phase retrieval algorithm by using stream-processing hardware on conventional graphics cards. Stream processing is a relatively new, yet powerful, paradigm to allow parallel processing of certain applications that apply single instructions to multiple data (SIMD). These stream processors are designed specifically to support large-scale parallel computing on a single graphics chip. Computationally intensive algorithms, such as the Fast Fourier Transform (FFT), are particularly well suited for this computing environment. This high-speed version of MGS exploits commercially available hardware to accomplish the same objective in a fraction of the original time. The exploit involves performing matrix calculations in nVidia graphic cards. The graphical processor unit (GPU) is hardware that is specialized for computationally intensive, highly parallel computation. From the software perspective, a parallel programming model is used, called CUDA, to transparently scale multicore parallelism in hardware. This technology gives computationally intensive applications access to the processing power of the nVidia GPUs through a C/C++ programming interface. The AAMGS (Accelerated Adaptive MGS) software takes advantage of these advanced technologies, to accelerate the optical phase error characterization. With a single PC that contains four nVidia GTX-280 graphic cards, the new implementation can process four images simultaneously to produce a JWST (James Webb Space Telescope) wavefront measurement 60 times faster than the previous code.

Lam, Raymond K.↗

NASA NTRS2016

Tree Canopy Light Interception Estimates in Almond and a Walnut Orchards Using Ground, Low Flying Aircraft, and Satellite Based Methods to Improve Irrigation Scheduling Programs

Canopy light interception is a main driver of water use and crop yield in almond and walnut production. Fractional green canopy cover (Fc) is a good indicator of light interception and can be estimated remotely from satellite using the normalized difference vegetation index (NDVI) data. Satellite-based Fc estimates could be used to inform crop evapotranspiration models, and hence support improvements in irrigation evaluation and management capabilities. Satellite estimates of Fc in almond and walnut orchards, however, need to be verified before incorporating them into irrigation scheduling or other crop water management programs. In this study, Landsat-based NDVI and Fc from NASA's Satellite Irrigation Management Support (SIMS) were compared with four estimates of canopy cover: 1. light bar measurement, 2. in-situ and image-based dimensional tree-crown analyses, 3. high-resolution NDVI data from low flying aircraft, and 4. orchard photos obtained via Google Earth and processed by an Image J thresholding routine. Correlations between the various estimates are discussed.

Satellite↗

NASA NTRS2018

Range and Intensity Image-Based Terrain and Vehicle Relative Pose Estimation System

A navigation system includes an image acquisition device for acquiring a range image of a target vehicle, at least one processor, a memory including a target vehicle model and computer readable program code, where the processor and the computer readable program code are configured to cause the navigation system to convert the range image to a point cloud having three dimensions, compute a transform from the target vehicle model to the point cloud, and use the transform to estimate the target vehicle's attitude and position for capturing the target vehicle.

Gill, Nathaniel↗

NASA NTRS2023

Measurements and Computations of Natural Transition on the NASA Juncture-Flow Model with a Symmetric Wing

Experiments were performed in the 14- by 22-Foot Subsonic Tunnel to assess natural transition on the symmetric-airfoil wings of the NASA Juncture-Flow Model. Infrared thermography was used to visualize the heating on the upper surface of both wings of the full-span model, and on the fuselage, for angles of incidence ranging from -10° to 10° at a fixed Reynolds number of 2.4E6 based on the chord length at the wing planform break. The fuselage boundary layer transitioned well upstream of the wing-root leading edge for all conditions. Transition fronts were identified by a steep rise in the surface temperature, and the transition coordinates were transformed from an image-based to a body-fixed system. Additionally, the state of the boundary layer was estimated at pressure ports distributed on the wings through observation of the pressure coefficient as a function of the angle of incidence. For increasing angles of incidence, the transition front was observed to advance upstream, in a mostly spanwise-uniform fashion, from near midchord at α = 0°; however, for increasingly negative angles of incidence, the transition front first receded and then advanced in a nonuniform jagged manner that is typically observed with stationary crossflow. The transition wedges first appeared inboard of the wing break and then spread outboard to near the tip by α = -6°. The upstream shift in transition at positive angles of incidence and the outboard progression of crossflow-dominated transition at increasingly negative angles of incidence are consistent with trends identified in a computational assessment of the boundary-layer transition based on both linear stability analysis and Reynolds-averaged-Navier-Stokes-based transition models. The stability results obtained from the Langley Stability and Transition Analysis Code were used to recalibrate a dual N-factor criterion, which allowed for the prediction of transition fronts that showed excellent agreement with the experiment. The Reynolds-averaged-Navier-Stokes-based models, from the NASA OVERFLOW 2.3 solver, that accounted for the crossflow instability showed mixed results in comparison with the experiment, with the helicity-based Langtry-Menter model performing the best. The experimental data, particularly the cases involving strong influence from both Tollmien-Schlichting and crossflow instabilities, will be valuable for the continued validation and improvement of transition models.

Boundary layer transition↗

NASA NTRS2023

Measurements and Computations of Natural Transition on the NASA Juncture-Flow Model with a Symmetric Wing

Experiments were performed in the 14- by 22-Foot Subsonic Tunnel to assess natural transition on the symmetric-airfoil wings of the NASA Juncture-Flow Model. Infrared thermography was used to visualize the heating on the upper surface of both wings of the full-span model, and on the fuselage, for angles of incidence ranging from -10° to 10° at a fixed Reynolds number of 2.4E6 based on the chord length at the wing planform break. The fuselage boundary layer transitioned well upstream of the wing-root leading edge for all conditions. Transition fronts were identified by a steep rise in the surface temperature, and the transition coordinates were transformed from an image-based to a body-fixed system. Additionally, the state of the boundary layer was estimated at pressure ports distributed on the wings through observation of the pressure coefficient as a function of the angle of incidence. For increasing angles of incidence, the transition front was observed to advance upstream, in a mostly spanwise-uniform fashion, from near midchord at α = 0°; however, for increasingly negative angles of incidence, the transition front first receded and then advanced in a nonuniform jagged manner that is typically observed with stationary crossflow. The transition wedges first appeared inboard of the wing break and then spread outboard to near the tip by α = -6°. The upstream shift in transition at positive angles of incidence and the outboard progression of crossflow-dominated transition at increasingly negative angles of incidence are consistent with trends identified in a computational assessment of the boundary-layer transition based on both linear stability analysis and Reynolds-averaged-Navier-Stokes-based transition models. The stability results obtained from the Langley Stability and Transition Analysis Code were used to recalibrate a dual N-factor criterion, which allowed for the prediction of transition fronts that showed excellent agreement with the experiment. The Reynolds-averaged-Navier-Stokes-based models, from the NASA OVERFLOW 2.3 solver, that accounted for the crossflow instability showed mixed results in comparison with the experiment, with the helicity-based Langtry-Menter model performing the best. The experimental data, particularly the cases involving strong influence from both Tollmien-Schlichting and crossflow instabilities, will be valuable for the continued validation and improvement of transition models.

boundary layer transition↗

NASA NTRS2023

Measurements and Computations of Natural Transition on the NASA Juncture-Flow Model with a Symmetric Wing

Experiments were performed in the 14- by 22-Foot Subsonic Tunnel to assess natural transition on the symmetric-airfoil wings of the NASA Juncture-Flow Model. Infrared thermography was used to visualize the heating on the upper surface of both wings of the full-span model, and on the fuselage, for angles of incidence ranging from -10° to 10° at a fixed Reynolds number of 2.4E6 based on the chord length at the wing planform break. The fuselage boundary layer transitioned well upstream of the wing-root leading edge for all conditions. Transition fronts were identified by a steep rise in the surface temperature, and the transition coordinates were transformed from an image-based to a body-fixed system. Additionally, the state of the boundary layer was estimated at pressure ports distributed on the wings through observation of the pressure coefficient as a function of the angle of incidence. For increasing angles of incidence, the transition front was observed to advance upstream, in a mostly spanwise-uniform fashion, from near midchord at α = 0°; however, for increasingly negative angles of incidence, the transition front first receded and then advanced in a nonuniform jagged manner that is typically observed with stationary crossflow. The transition wedges first appeared inboard of the wing break and then spread outboard to near the tip by α = -6°. The upstream shift in transition at positive angles of incidence and the outboard progression of crossflow-dominated transition at increasingly negative angles of incidence are consistent with trends identified in a computational assessment of the boundary-layer transition based on both linear stability analysis and Reynolds-averaged-Navier-Stokes-based transition models. The stability results obtained from the Langley Stability and Transition Analysis Code were used to recalibrate a dual N-factor criterion, which allowed for the prediction of transition fronts that showed excellent agreement with the experiment. The Reynolds-averaged-Navier-Stokes-based models, from the NASA OVERFLOW 2.3 solver, that accounted for the crossflow instability showed mixed results in comparison with the experiment, with the helicity-based Langtry-Menter model performing the best. The experimental data, particularly the cases involving strong influence from both Tollmien-Schlichting and crossflow instabilities, will be valuable for the continued validation and improvement of transition models.

boundary layer transition↗

NASA NTRS2023

Users' Guide to Vinci: Personal Computer Software for Planning Image-based Measurements in Wind Tunnels

Vinci is software that can be used to plan image-based measurements in wind tunnels. It allows the user to plan the placement of cameras and the choice of lenses well in advance of a test, thereby reducing the set-up time and cost when tunnel occupancy begins. It can also be used post-test to display data (pressure-sensitive paint, particle image velocimetry, model deformation) in context with the test article. Vinci is self-contained and runs on personal computers under Windows operating systems. No other software is required. Test articles are represented by CFD-like surface grids that may be read from an external file or created within the program as a combination of simple geometric shapes. The user controls the position and orientation of the test article through a Graphical User Interface (GUI) and may add many additional objects, including tunnel walls and windows, a wide variety of simple geometric shapes, mirrors, lamps, and laser sheets. The application computes simulated images from up to 40 cameras. Images are based on pinhole projection. Each camera is defined by the sensor size and the focal length of the lens. All camera parameters, including position and point angles, are controlled through the GUI. Simulated images are displayed in a window of the GUI and may be saved as bitmaps.

Users’ Guide, Image Planning, Wind Tunnels, Softwa↗

NASA NTRSDate not supplied

Recent Developments to the Porous Microstructure Analysis (PuMA) Software

Introduction The Porous Microstructure Analysis (PuMA) software is an open source framework for image-based simulation, primarily used to determine effective properties based on material microstructure. PuMA was originally developed for the study of NASA thermal protection materials; however, many of the solvers in PuMA have applicability to a broad range of materials science applications. PuMA version 3.2 computes material surface area, pore diameters, effective thermal conductivity, continuum and rarefied tortuosity, and permeability. For anisotropic materials, PuMA can estimate material orientation and compute anisotropic thermal conductivity and elasticity. In this talk, a brief overview of the PuMA software and underlying methods will be presented, as well as some recent and ongoing developments, including the use of immersed boundary methods for image-based simulation and the development of a new weave segmentation tool, called TomoSAM. Cut-Cell method for heat and mass transfer For simulations on complex microstructures, traditional unstructured meshing techniques often prove to be difficult and time-intensive. Voxel-based solvers, which represent the surface as a staircase structure, are relatively simple to implement but can lose accuracy when feature resolution is poor. In this work, we present a novel 3D cut-cell method for solving the variable coefficient Poisson equation on complex microstructures, suitable for the determination of effective thermal conductivity or tortuosity of a material. The method uses a Marching Cubes/Marching Squares surface reconstruction to create cut-cells and determine geometric quantities. A flux-correction method is extended to 3D, with least squares gradient reconstruction, to solve for the boundary fluxes in the cut-cells. Verification cases show the solver achieves globally 2nd order accuracy on complex microstructures. TomoSAM TomoSAM, a module of the PuMA software, has been developed as a plugin for 3D Slicer, a software platform used for 3D image processing and visualization. It utilizes the Segment Anything Model (SAM), a deep learning model capable of identifying objects and generating image masks based on minimal user input. This feature enables efficient segmentation of complex 3D datasets, particularly of woven materials, from tomography or similar imaging methods, reducing the need for manual segmentation.

Tomography↗

NASA NTRSDate not supplied

Recent Developments to the Porous Microstructure Analysis (PuMA) Software

The Porous Microstructure Analysis (PuMA) software is an open source framework for image-based simulation, primarily used to determine effective properties based on material microstructure. PuMA was originally developed for the study of NASA thermal protection materials; however, many of the solvers in PuMA have applicability to a broad range of materials science applications. PuMA version 3.2 computes material surface area, pore diameters, effective thermal conductivity, continuum and rarefied tortuosity, and permeability. For anisotropic materials, PuMA can estimate material orientation and compute anisotropic thermal conductivity and elasticity. In this talk, a brief overview of the PuMA software and underlying methods will be presented, as well as some recent and ongoing developments, including the use of immersed boundary methods for image-based simulation and the development of a new weave segmentation tool, called TomoSAM. Cut-Cell method for heat and mass transfer For simulations on complex microstructures, traditional unstructured meshing techniques often prove to be difficult and time-intensive. Voxel-based solvers, which represent the surface as a staircase structure, are relatively simple to implement but can lose accuracy when feature resolution is poor. In this work, we present a novel 3D cut-cell method for solving the variable coefficient Poisson equation on complex microstructures, suitable for the determination of effective thermal conductivity or tortuosity of a material. The method uses a Marching Cubes/Marching Squares surface reconstruction to create cut-cells and determine geometric quantities. A flux-correction method is extended to 3D, with least squares gradient reconstruction, to solve for the boundary fluxes in the cut-cells. Verification cases show the solver achieves globally 2nd order accuracy on complex microstructures. TomoSAM TomoSAM, a module of the PuMA software, has been developed as a plugin for 3D Slicer, a software platform used for 3D image processing and visualization. It utilizes the Segment Anything Model (SAM), a deep learning model capable of identifying objects and generating image masks based on minimal user input. This feature enables efficient segmentation of complex 3D datasets, particularly of woven materials, from tomography or similar imaging methods, reducing the need for manual segmentation.

Tomography↗