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DOE OSTI2024

Developmental assembly of multi-component polymer systems through interconnected synthetic gene networks in vitro

Abstract Living cells regulate the dynamics of developmental events through interconnected signaling systems that activate and deactivate inert precursors. This suggests that similarly, synthetic biomaterials could be designed to develop over time by using chemical reaction networks to regulate the availability of assembling components. Here we demonstrate how the sequential activation or deactivation of distinct DNA building blocks can be modularly coordinated to form distinct populations of self-assembling polymers using a transcriptional signaling cascade of synthetic genes. Our building blocks are DNA tiles that polymerize into nanotubes, and whose assembly can be controlled by RNA molecules produced by synthetic genes that target the tile interaction domains. To achieve different RNA production rates, we use a strategy based on promoter “nicking” and strand displacement. By changing the way the genes are cascaded and the RNA levels, we demonstrate that we can obtain spatially and temporally different outcomes in nanotube assembly, including random DNA polymers, block polymers, and as well as distinct autonomous formation and dissolution of distinct polymer populations. Our work demonstrates a way to construct autonomous supramolecular materials whose properties depend on the timing of molecular instructions for self-assembly, and can be immediately extended to a variety of other nucleic acid circuits and assemblies.

Science & Technology - Other Topics↗

NASA NTRS1987

Simultaneous radio and white light observations of the 1984 June 27 coronal mass ejection event

Two-dimensional images of radio bursts in the 25-50-MHz frequency range obtained with the SMM Coronagraph/Polarimeter and Mauna Loa K-coronameter during a coronal mass ejection event on June 27, 1984 are discussed. The present event is shown to be spatially and temporally associated with precursors in the form of meter-decameter type III bursts, soft X-ray emission, and a H-alpha flare spray. The results suggest gyrosychrotron emission from a plasmoid containing a magnetic field of about 2.5 G and nonthermal electrons with a number density of about 100,000/cu cm and energy of greater than about 350 keV.

Gopalswamy, N.↗

NASA NTRS2005

Hematite Spherules in Basaltic Tephra Altered Under Aqueous, Acid-Sulfate Conditions on Mauna Kea Volcano, Hawaii: Possible Clues for the Occurrence of Hematite-Rich Spherules in the Burns Formation at Meridiani Planum, Mars

Iron-rich spherules (>90% Fe2O3 from electron microprobe analyses) approx.10-100 microns in diameter are found within sulfate-rich rocks formed by aqueous, acid-sulfate alteration of basaltic tephra on Mauna Kea volcano, Hawaii. Although some spherules are nearly pure Fe, most have two concentric compositional zones, with the core having a higher Fe/Al ratio than the rim. Oxide totals less than 100% (93-99%) suggest structural H2O and/or /OH. The transmission Moessbauer spectrum of a spherule-rich separate is dominated by a hematite (alpha-Fe2O3) sextet whose peaks are skewed toward zero velocity. Skewing is consistent with Al(3+) for Fe(3+) substitution and structural H2O and/or /OH. The grey color of the spherules implies specular hematite. Whole-rock powder X-ray diffraction spectra are dominated by peaks from smectite and the hydroxy sulfate mineral natroalunite as alteration products and plagioclase feldspar that was present in the precursor basaltic tephra. Whether spherule formation proceeded directly from basaltic material in one event (dissolution of basaltic material and precipitation of hematite spherules) or whether spherule formation required more than one event (formation of Fe-bearing sulfate rock and subsequent hydrolysis to hematite) is not currently constrained. By analogy, a formation pathway for the hematite spherules in sulfate-rich outcrops at Meridiani Planum on Mars (the Burns formation) is aqueous alteration of basaltic precursor material under acid-sulfate conditions. Although hydrothermal conditions are present on Mauna Kea, such conditions may not be required for spherule formation on Mars if the time interval for hydrolysis at lower temperatures is sufficiently long.

Morris, R. V.↗

NASA NTRS2007

Saharan Air and Atlantic Tropical Cyclone Suppression From a Global Modeling Perspective

During summer 2006, the NASA African Monsoon Multidisciplinary Analysis (NAMMA) organized a field campaign in Africa called Special Observation Period (SOP-3), in which scientists in the field were involved in a number of surface network and aircraft measurements. One of the scientific goals of the campaign was to understand the nature and causes for tropical cyclogenesis originating out of African Easterly Waves (AEWs, westward propagating atmospheric disturbances sometimes associated with precursors of hurricanes), and the role that the Saharan Air Layer (SAL, a hot and dry air layer advecting large amounts of dust) can play in the formation or suppression of tropical cyclones. During the NAMMA campaign a high-resolution global model, the NASA GEOS-5, was operationally run by the NASA Global Modeling and Assimilation Office (GMAO) in support to the mission. The daily GEOS-5 forecasts were found to be very useful by decision-making scientists in the field as an aid to discriminate between developing and non-developing AEWs and plan the flight tracks. In the post-event analyses which were performed mostly by the Goddard Laboratory for Atmospheres, two events were highlighted: a non-developing AEW which appeared to have been suppressed by Saharan air, compared to a developing AEW which was the precursor of hurricane Helene. Both events were successfully predicted by the GEOS-5 during the real-time forecasts provided in support to the mission. In this work it is found that very steep moisture gradients and a strong thermal dipole, with relatively warm air in the mid-troposphere and cool air below, are associated with SAL in both the GEOS-5 forecasts and the NCEP analyses, even at -great distance- from the Sahara. The presence of these unusual thermodynamic features over the Atlantic Ocean, at several thousands of kilometers from the African coastline, is suggestive that SAL mixing is very minimal and that the model's capability of retaining the different properties of air masses during transport are important to represent effectively the role of dry air intrusions in the tropical circulation.

Reale, O.↗

DOE OSTI2020

The influence of wintertime SST variability in the Western North Pacific on ENSO diversity

Abstract Sea surface temperature anomalies (SSTa) in the Western North Pacific (WNP) have been linked to the development of El Niño Southern Oscillation (ENSO) events a full year in advance. However, the contribution of the WNP precursor to the temporal evolution and spatial complexity of ENSO remains unclear. Using the preindustrial experiment of the Community Earth System Model as the control climate, a partially coupled experiment is conducted in which WNP SSTa are restored to the model climatology. By comparing the perturbed experiment to the control, we are able to clearly characterize ENSO’s response to WNP SST variability. We find that the WNP is predominantly linked to eastern Pacific (EP) ENSO events. Without SST variability in the WNP, central Pacific (CP) ENSO events are more likely to develop. This variation in ENSO flavor is controlled by how the WNP projects onto wind stress anomalies in the western equatorial Pacific, which in turn impacts the discharge and recharge of ocean heat during the ENSO cycle. Specifically, the removal of SSTa in the WNP weakens the buildup of ocean heat in the western equatorial Pacific, which then hinders the development of EP-type events.

Meteorology & Atmospheric Sciences↗

NASA NTRS2011

30 WS North Base Wind Study

The 30 Weather Squadron (30 WS) is concerned about strong winds observed at their northern towers without advance warning. They state that terrain influences along the extreme northern fringes of Vandenberg Air Force Base (VAFB) make it difficult for forecasters to issue timely and accurate high wind warnings for northeasterly wind events. These events tend to occur during the winter or early spring when they are under the influence of the Great Basin high pressure weather regime. The Launch Weather Officers (LWOs) have seen these rapid wind increases in the current northern Towers 60, 70 and 71 in excess of their 35 kt operational warning threshold. For this task, the 30 WS requested the Applied Meteorology Unit (AMU) analyze data from days when these towers reported winds in excess of 35 kt and determine if there were any precursors in the observations that would allow the LWOs to better forecast and warn their operational customers for these wind events. The 30 WS provided wind tower data for the cool season (October - March) from the period January 2004-March 20 IO. The AMU decoded and evaluated the wind tower data for 66 days identified by the 30 WS as having high-wind events. Out of the 66 event days, only 30 had wind speed observations of > or =35 kt from at least one of the three northern towers. The AMU analyzed surface and upper air charts to determine the synoptic conditions for each event day along with tower peak wind speed and direction time series and wind rose charts for all 30 event days. The analysis revealed a trend on all event days in which the tower winds shifted to the northeast for a period of time before the first recorded > or =35 kt wind speed. The time periods for the 30 event days ranged from 20 minutes to several hours, with a median value of 110 minutes. This trend, if monitored, could give the 30 WS forecasters a precursor to assist in issuing an operational warning before a high wind event occurs. The AMU recommends developing a high-wind alert capability for VAFB using a local mesoscale model to forecast these wind events. The model should incorporate all of the VAFB local data sets and have a forecast capability of between 2 to 24 hours. Such a model would allow the meteorologists at VAFB to alert the operational customers of high wind events in a timely manner so protective action could be taken.

Wheeler, Mark↗

NASA NTRS1994

The analysis of rapidly developing fog at the Kennedy Space Center

This report documents fog precursors and fog climatology at Kennedy Space Center (KSC) Florida from 1986 to 1990. The major emphasis of this report focuses on rapidly developing fog events that would affect the less than 7-statute mile visibility rule for End-Of-Mission (EOM) Shuttle landing at KSC (Rule 4-64(A)). The Applied Meteorology Unit's (AMU's) work is to: develop a data base for study of fog associated weather conditions relating to violations of this landing constraint; develop forecast techniques or rules-of-thumb to determine whether or not current conditions are likely to result in an acceptable condition at landing; validate the forecast techniques; and transition techniques to operational use. As part of the analysis the fog events were categorized as either advection, pre-frontal or radiation. As a result of these analyses, the AMU developed a fog climatological data base, identified fog precursors and developed forecaster tools and decision trees. The fog climatological analysis indicates that during the fog season (October to April) there is a higher risk for a visibility violation at KSC during the early morning hours (0700 to 1200 UTC), while 95 percent of all fog events have dissipated by 1600 UTC. A high number of fog events are characterized by a westerly component to the surface wind at KSC (92 percent) and 83 percent of the fog events had fog develop west of KSC first (up to 2 hours). The AMU developed fog decision trees and forecaster tools that would help the forecaster identify fog precursors up to 12 hours in advance. Using the decision trees as process tools ensures the important meteorological data are not overlooked in the forecast process. With these tools and a better understanding of fog formation in the local KSC area, the Shuttle weather support forecaster should be able to give the Launch and Flight Directors a better KSC fog forecast with more confidence.

Wheeler, Mark M.↗

DOE OSTI2020

Large contribution of organics to condensational growth and formation of cloud condensation nuclei (CCN) in the remote marine boundary layer

Marine low clouds strongly influence global climate, and their radiative effects are particularly susceptible to the concentration of cloud condensation nuclei (CCN). One major source of CCN is the condensational growth of pre-CCN particles, and sulfate has long been considered the major condensing species in the remote marine boundary layer. While some studies have suggested that secondary organic species can contribute to particle growth, its importance remains unclear. Here we present the first long-term observational evidence that organics play an important role in particle growth over remote oceans. To the contrary of traditional thinking, sulfate dominated condensational growth for only a small (~18 %) fraction of the 62 observed growth events, even fewer than the organic-dominated events (24 %). During most (58 %) growth events, the major condensing species included both organics and sulfate. Potential precursors of the secondary organics are volatile organic compounds from ocean biological activities and those produced by the air–sea interfacial oxidation. Our results indicate that the condensation of secondary organics contributes strongly to the growth of pre-CCN particles and thereby the CCN population over remote oceans.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2003

Genetic control of Drosophila nerve cord development

The Drosophila ventral nerve cord has been a central model system for studying the molecular genetic mechanisms that control CNS development. Studies show that the generation of neural diversity is a multistep process initiated by the patterning and segmentation of the neuroectoderm. These events act together with the process of lateral inhibition to generate precursor cells (neuroblasts) with specific identities, distinguished by the expression of unique combinations of regulatory genes. The expression of these genes in a given neuroblast restricts the fate of its progeny, by activating specific combinations of downstream genes. These genes in turn specify the identity of any given postmitotic cell, which is evident by its cellular morphology and choice of neurotransmitter.

Review↗

NASA NTRS1984

Precipitation and kinematic structure of microburst producing storms

Single Doppler radar techniques are used to study the precipitation and kinematic structure of microburst-producing storms. Radar data collected by NCAR radars during the Joint Airport Weather Studies (JAWS) experiment are presented along with rawinsonde data taken at Denver, Colorado near the times of microburst occurrence. The radar reflectivity and velocity structure of the storms exhibited great variability, with no unique signature indicating a microburst was imminent. Detection of descending divergent flow is probably not a microburst forecasting tool, nor can the presence of rotation be used as a precursor at present. Convergent flow aloft was a prominent feature in all events. Its occurrence with a descending precipitation shaft and/or at high altitudes is a good indicator of a downdraft. It is concluded that convergent flow is a very important microburst forecasting clue, particularly when coupled with the entrainment of Theta(e) air and a dry-adiabatic lapse rate below cloud base.

Roberts, R. D.↗

NASA NTRS1992

Great magnetic storms

The five largest magnetic storms that occurred between 1971 to 1986 are studied to determine their solar and interplanetary causes. All of the events are found to be associated with high speed solar wind streams led by collisionless shocks. The high speed streams are clearly related to identifiable solar flares. It is found that: (1) it is the extreme values of the southward interplanetary magnetic fields rather than solar wind speeds that are the primary causes of great magnetic storms, (2) shocked and draped sheath fields preceding the driver gas (magnetic cloud) are at least as effective in causing the onset of great magnetic storms (3 of 5 events) as the strong fields within the driver gas itself, and (3) precursor southward fields ahead of the high speed streams allow the shock compression mechanism (item 2) to be particularly geoeffective.

Tsurutani, Bruce T.↗

NASA NTRS1994

Particle and field signatures during pseudobreakup and major expansion onset

The temporal and spatial scales of the onset of two types of substorm events are investigated. These substorms were cases where the expansion onset had precursor localized auroral activation without significant negative bay enhancement, that is, 'pseudobreakup'. High-resolution energetic particle and magnetic field data at synchronous orbit are used for the analysis together with auroral and magnetic field data simultaneously taken from ground-based instrumentation. The auroral structure following the pseudobreakup significantly resembled the major expansion aurora, except in its spatial scale. Typical magnetospheric onset signatures such as tail current diversion, dipolarization, and injection were observed associated with some of the pseudobreakups. The major expansion, on the other hand, consisted of a number of rather localized injections and expansions, each of which had timescales of 2-8 min, a comparable timescale to that of pseudobreakups. This study shows that there does not appear to be any phenomenological differences between pseudobreakups and major expansion onsets. The major difference between pseudobreakups and major expansion onsets would be the number of occurrences, as well as the intensity and the scale size of the magnetospheric source.

Nakamura, Rumi↗

NASA NTRS2006

Non-nebular Origin of Dark Mantles Around Chondrules and Inclusions in CM Chondrites

Our examination of nine CM chondrites that span the aqueous alteration sequence leads us to conclude that compact dark fine mantles surrounding chondrules and inclusions in CM chondrites are not discrete fine-grained rims acquired in the solar nebula as modeled by Metzler et al. [Accretionary dust mantles in CM chondrites: evidence for solar nebula processes. Geochim. Cosmochim. Acta 56, 1992, 2873-28971. Nebular processes that lead to agglomeration produce materials with porosities far higher than those in the dark mantles. We infer that the mantles were produced from porous nebular materials on the CM parent asteroid by impact-compaction (a process that produces the lowest porosity adjacent to chondrules and inclusions). Compaction was followed by aqueous alteration that formed tochilinite, serpentine, Ni-bearing sulfide, and other secondary products in voids in the interchondrule regions. Metzler et al. reported a correlation between mantle thickness and the radius of the enclosed object. In Yamato 791 198 we find no correlation when all sizes of central objects and dark lumps are included but a significant correlation (r(sup 2) = 0.44) if we limit consideration to central objects with radii >35 microns; a moderate correlation is also found in QUE 97990. We suggest that impact-induced shear of a plum-pudding-like precursor produced the observed "mantles"; these were shielded from comminution during impact events by the adjacent stronger chondrules and inclusions. Some mantles in CM chondrites with low degrees of alteration show distinct layers that may largely reflect differences in porosity. Typically, a gray, uniform inner layer is surrounded by an outer layer consisting of darker silicates with BSE-bright speckles. The CM-chondrite objects characterized as "primary accretionary rocks" by Metzler et al. did not form in the nebula, but rather on the parent body. The absence of solar-flare particle tracks and solar-wind-implanted rare gases in these clasts reflect their lithified nature and low surface/volume ratios during the period when they resided in the regolith and were subject to irradiation by solar particles. The clasts are analogous to the light-colored metamorphosed clasts in ordinary-chondrite regolith breccias (which also lack solar-flare particle tracks and solar-wind gas).

Trigo-Rodriquez, Josep M.↗

DOE OSTI2021

Progress Towards Interpretable Machine Learning-based Disruption Predictors Across Tokamaks

In this paper we lay the groundwork for a robust cross-device comparison of data-driven disruption prediction algorithms on DIII-D and JET tokamaks. In order to consistently carry on a comparative analysis, we define physics-based indicators of disruption precursors based on temperature, density, and radiation profiles that are currently missing for DIII-D data. These profile-based indicators are shown to well-describe impurity accumulation events in both DIII-D and JET discharges that eventually disrupt. Thanks to the univariate analysis on the features used in such data-driven applications on both tokamaks, we are able to statistically highlight differences in the dominant disruption precursors: JET with its ITER-like wall is more prone to impurity accumulation events, while DIII-D is more subject to edge cooling mechanisms that destabilize dangerous MHD modes. Even though the analyzed datasets are characterized by such intrinsic differences, we show how data-driven algorithms trained on one device can be used to predict and interpret disruptive scenarios on the other. As long as the destabilizing precursors are diagnosed in a device-independent way, the knowledge that data-driven algorithms learn on one device can be used to explain a disruptive behavior on another device.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2025

Precursors to Extreme Wintertime Cold in the Midwest United States

ABSTRACT Cold air outbreaks (CAOs) are extreme weather events that affect millions of people every winter, including those in the US Midwest. Per our criteria (a sufficiently cold event over a wide area and a long period), we identified 43 wintertime CAOs in the Midwest region using data from 1980 to 2021 (approximately one per year). These occurred in the Midwest during three of five North American weather regimes. Two regimes' CAOs are related to a weak stratospheric polar vortex, consistent with previous research on CAOs in the neighbouring Great Plains region. A different regime, characterised by anomalous ridging along the west coast of North America, is the most common for Midwest CAOs, unlike in regions further to the west. Unlike the other two regimes, these so‐called West Coast Ridge CAOs have no clear stratospheric connection. West Coast Ridge CAOs are instead linked to tropospheric processes on synoptic timescales, usually preceded by a weaker than average mid‐tropospheric height gradient in the western Pacific about 10 days prior to CAO onset. Our results demonstrate a particular challenge for predicting some extreme events in the Midwest, with important implications for early warning systems.

Ryan, James M. [Department of Earth and Atmospheri↗

NASA NTRSDate not supplied

Capturing Complex Multivariate Time Series Interactions to Detect High-Risk Adverse Events During Flight

The reduction of aviation safety metrics below target thresholds continue to drive down the number of aviation fatalities and accidents. To meet future safety demands, sustained efforts by aviation agencies promoting safety assurance processes and systems have prompted ongoing research on identifying and mitigating in-flight risks. With the projected increase in passenger load factor and rollout of more autonomous systems into the national airspace, the need to detect high-risk events in-time or ahead-of-time is becoming increasingly crucial. New anomaly detection and precursor identification algorithms will need to scale to different airframes, levels of autonomy, and system complexity. While the pervasiveness of deep learning has resulted in the development of performant anomaly detection methods, these sophisticated models currently suffer from low end-user interpretability. Building off our previous work on identifying adverse events in multivariate flight data during descent, we propose a data-driven approach for detecting in-flight adverse events caused by the complex interplay of flight variables. Our approach utilizes ordinal patterns of important aircraft stability variables (e.g., airspeed and descent rate) to capture multivariate flight dynamics that can be used to predict the onset of unstable approaches, a high-risk adverse event that can occur during approach. Through the use of ordinal patterns, we aim to create more interpretable detection models of in-flight adverse events that can be translated to future autonomous systems without difficulty. Our analysis shows the presence of distinct ordinal pattern distributions that can be used to predict unstable approaches 1 minute ahead of time with an accuracy of 0.69 and a recall of 0.73 and 30 seconds ahead with an accuracy of 0.70 and a recall of 0.86.

Risk detection↗

NASA NTRSDate not supplied

Capturing Multivariate Time Series Interactions to Detect High‑Risk Instability During Approach

Risk detection↗

DOE OSTI2026

High Time Resolution Modelled and Measured New Particle Formation Rates During the 2023 Pittsburgh, PA Campaign

Particle size distributions are used to calculate nucleation rates during new particle formation (NPF). However, the low time resolution and poor sensitivity of instruments deployed to observe particle size distributions can lead to inaccurate estimates of nucleation rates. We calculated nucleation rates in Pittsburgh, PA from particle size distributions measured with the new high time resolution Condensation Particle Counters For Atmospheric Rapid Measurements (CPC FARM) and from gas precursor concentrations measured with a chemical ionization mass spectrometer. The CPC FARM nucleation rates were calculated by examining the appearance rate of particles in the smallest size bin at 1.6 nm. The nucleation rate of 1.6 nm determined every second resulted in positive and negative rates, indicating the influence of inhomogeneous mixing and advection of precursor gases and clusters. These effects are not currently considered when estimating nucleation rates from measurements. The nucleation rates from the CPC FARM were compared to the nucleation rates determined from a transient acid‐base reaction model using measured sulfuric acid concentration, strong base concentrations, and CPC detection efficiencies. The transient form of the model allowed the advection of heterogeneously mixed precursors to influence the nucleation rate. Good agreement between particle and gas‐based nucleation rates is observed during sulfuric acid‐driven NPF events. This study demonstrates that high time resolution measurements of short‐lived and rapidly formed particles are needed to accurately capture nucleation rates, which are likely influenced by advection of nucleation precursors and clusters in heterogeneous environments such as urban areas.

Cheng, D. [Carnegie Mellon Univ., Pittsburgh, PA (↗