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At least 91 records · Page 5

NASA GeneLab Space Omics Database: Expanding from Space to Ionizing Radiation Data on the Ground

NASA GeneLab is an open-access repository for omics datasets generated by biological experiments conducted in space or ground experiments relevant to spaceflight (e.g. simulated cosmic radiation, simulated microgravity, bed rest studies). The GeneLab Data Systems (GLDS) version 4.0 will be available on October 1st 2019, and will provide a state-of-the-art bioinformatics platform for the space biology and radiation communities to upload their data into an omics data commons, to process their data with vetted standard workflows and to compare with existing analyses. Started in 2015 as a repository designed to archive omics data from space experiments, GeneLab has expanded its scope to all ionizing radiation omics experiments conducted on the ground and has put considerable effort in providing carefully characterized radiation metadata on all datasets. GeneLab is also providing processed data derived from the raw data covering a large spectrum of omics (genome, epigenome, transcriptome, epitranscriptome, proteome, metabolome) to help users explore important questions: 1) Which genes or proteins are expressed differently in space for various living organisms? 2) What specific DNA mutations or epigenetic changes happen in space or after exposure to ionizing radiation? and 3) How does genetics affect these responses? Processed data available on GeneLab are derived by standard data analysis workflows vetted by hundreds of scientists who volunteered to join one of the four GeneLab Analysis Working Groups (Animal AWG, Plant AWG, Microbe AWG, Multi-Omics AWG). In this presentation, we will discuss how to bridge the gap between irradiation studies performed on earth and biological experiments conducted in space since the early 1990's. We will discuss how radiation dosimetry was estimated for datasets derived from samples collected during the Space Shuttle era on the International Space Station and on other orbiting platforms. Finally, we will address future strategies regarding dose monitoring in future missions into space, inter-agency efforts to unify data under one umbrella, and knowledge dissemination across the radiation research community and the space biology community.

open-science↗

"XMM/RXTE Observations of GX 339-4"

In March 2003, we performed two simultaneous XMM/RXTE observations of the black hole candidate GX 339-4. Our goal is to compare these data to our prior simultaneous RXTE/ASCA observations (Nowak, Wilms & Dove, 2002). These observations were carried out in timing mode, as opposed to burst mode, and are more complex to analyze than we expected. Specifically, the data suffered from a number of telemetry dropouts (in fact, the standard archive processing failed on these data, and more than a year passed from the time of the observations before the data was delivered to us). Furthermore, the core of the EPIC PSF suffers slightly from pileup and gain shifts. We continue to work on this data, however, and anticipate publishing it within the next academic year. Here we highlight our ongoing work and outline our plans for publication.

Nowak, M. A.↗

Risk of Performance and Behavioral Health Decrements Due to Inadequate Cooperation, Coordination, and Psychosocial Adaptions within a Team

The Risk of Performance and Behavioral Health Decrements Due to Inadequate Cooperation, Coordination, Communication, and Psychosocial Adaptation within a Team (the Team Risk) is primarily performance-focused, with a secondary emphasis on behavioral health outcomes resulting from team performance and interpersonal interactions. Monitoring tools, measures, and countermeasures are aimed at enhancing team processes and team composition configurations to optimize team performance and functioning. Long-duration exploration missions (LDEMs) will include major challenges that could affect team performance, including social isolation, physical confinement, a small and diverse crew, communication delays between crew and ground, limited or no crew rotation or evacuation options, limited or no resupply, and a high-consequence environment. Each of these conditions will affect the crew’s coordination, cooperation, psychological well-being, and performance. Although the International Space Station (ISS) remains important for studies that require spaceflight testing and validation, the current conditions on the ISS do not adequately mimic the exploration environment that is required for National Aeronautics and Space Administration (NASA) teams research, and thus access to terrestrial or ground-based analogs of LDEM conditions is paramount. The emphasis on analogs for research is reflected in this updated evidence review of the Team Risk, and includes data from studies conducted at isolated, confined, extreme (ICE) environments (e.g., Antarctic stations), and from several mission simulation analogs such as the Human Exploration Research Analog (HERA) (HERA Experiment Information Package, 2014), also known as isolated, confined, controlled (ICC) environments. These studies have characterized many team factors regarding LDEMs, and the Team Risk has now matured from risk characterization to focusing more on countermeasure development. Because spaceflight evidence for team-level research is lacking, no reliable data is available to quantify the impact of team-level variables on individual and team-level outcomes during spaceflight missions. Until recently, no systematic attempt had been undertaken to measure the performance effects of team cohesion, team composition, team training, or team-related psychosocial adaptation during spaceflight. The Team Risk is a relatively young research area for NASA, with substantial growth only since the 2000s, and with limited access to spaceflight performance data. As a result, spaceflight evidence is lacking to identify specifically what team composition, level of training, amount of cohesion, or quality of psychosocial adaptation is necessary to reduce the risk of performance errors in space. However, astronaut journals and interviews and reports from spaceflight subject matter experts (SMEs) provide testimonies that team performance during spaceflight is important for mission success and to maintain crew health. Team spaceflight data is now being collected as part of the Spaceflight Standard Measures task (Clement, 2021)—a set of core measurements related to many human spaceflight risks that are collected from astronauts before, during, and after long-duration missions. The team-related standard measures focus on team cohesion, team performance, group living, team climate, and team processes. Collection of standard measures data is ongoing and published data is not yet available. Finally, although spaceflight evidence is lacking, evidence gleaned from ground studies and spaceflight analog studies will help close the gaps outlined in the Team Risk. Ground-based studies provide quantitative evidence for team functioning in ICE environments. Academic research on teams has produced dozens of meta-analyses that can be used to understand the general relationships among team inputs (e.g., team member characteristics and skills, job context), team processes, and emergent states (e.g., coordination, communication, cooperation, cohesion, trust, shared cognition), and team outcomes (e.g., effectiveness, errors, adaptation). Teams are complex, incorporating individual characteristics of team members, but also existing at a level that is greater than the sum of its parts. Therefore, the Team Risk must be integrated with other individual-focused NASA Human Research Program (HRP) risks, including Behavioral Medicine (BMed), Sleep, and Human-Systems Integration Architecture (HSIA), and emerging research indicates more integration may needed between the Team Risk and the physiologically oriented risks. Much of this integration occurs through the Human Systems Risk Board (HSRB). A lack of team functioning may be a stressor in some circumstances, but the team often acts as a countermeasure. For example, support for team leaders and teammates can facilitate individual functioning and encourage psychological and physically healthy behaviors and attitudes. However, more research is needed regarding teams during LDEMs and the remaining gaps in the research are described in the current report.

Lauren Blackwell Landon↗

Visualization tools for the processing of airglow data from RAIDS

In anticipation of large data sets associated with a number of atmospheric imaging instruments being prepared for long term global coverage, NRL is developing graphical interfaces for all aspects of the program. For the first of these projects, RAIDS (the Remote Atmospheric and Ionospheric Detection System), a graphical approach to data handling, visualization, and analysis is envisioned and will set the stage for the satellites that follow. An overall system of hardware and a set of software 'tools,' that will allow for both the routine handling of all data and the analysis of large data sets assembled by scientists and instrument engineers, are currently being developed. The software for standard processing and visualization of instrument data is independent of computer platform and will allow for easy adaptation from one experiment to another. The processing will produce data sets that have similar characteristics, allowing for easy comparison of data obtained under similar circumstances. The visualization of both the engineering and scientific data is an important part of the system. By creating graphical environments for engineering evaluations and for scientific analysis data sets can be viewed and analyzed rapidly. This rapid analysis of data will contribute towards a greater portion of the RAIDS data being utilized.

Miller, Gordon J.↗

A sophisticated, multi-channel data acquisition and processing system for high frequency noise research

A sophisticated, multi-channel computerized data acquisition and processing system was developed at the NASA LeRC for use in noise experiments. This technology, which is available for transfer to industry, provides a convenient, cost-effective alternative to analog tape recording for high frequency acoustic measurements. This system provides 32-channel acquisition of microphone signals with an analysis bandwidth up to 100 kHz per channel. Cost was minimized through the use of off-the-shelf components. Requirements to allow for future expansion were met by choosing equipment which adheres to established industry standards for hardware and software. Data processing capabilities include narrow band and 1/3 octave spectral analysis, compensation for microphone frequency response/directivity, and correction of acoustic data to standard day conditions. The system was used successfully in a major wind tunnel test program at NASA LeRC to acquire and analyze jet noise data in support of the High Speed Civil Transport (HSCT) program.

Hall, David G.↗

The Global Precipitation Measurement (GPM) Project

The Global Precipitation Measurement (GP!v1) mission is an international cooperative effort to advance the understanding of the physics of the Earth's water and energy cycle. Accurate and timely knowledge of global precipitation is essential for understanding the weather/climate/ecological system, for improving our ability to manage freshwater resources, and for predicting high-impact natural hazard events including floods, droughts, extreme weather events, and landslides. The GPM Core Observatory will be a reference standard to uniformly calibrate data from a constellation of spacecraft with passive microwave sensors. GPM is being developed under a partnership between the United States (US) National Aeronautics and Space Administration (NASA) and the Japanese Aerospace and Exploration Agency (JAXA). NASA's Goddard Space Flight Center (GSFC), in Greenbelt, MD is developing the Core Observatory, two GPM Microwave Imager (GMI) instruments, Ground Validation System and Precipitation Processing System for the GPM mission. JAXA will provide a Dual-frequency Precipitation Radar (DPR) for installation on the Core satellite and launch services for the Core Observatory. The second GMI instrument will be flown on a partner-provided spacecraft. Other US agencies and international partners contribute to the GPM mission by providing precipitation measurements obtained from their own spacecraft and/or providing ground-based precipitation measurements to support ground validation activities. The Precipitation Processing System will provide standard data products for the mission.

Azarbarzin, Ardeshir↗

Experiment in Onboard Synthetic Aperture Radar Data Processing

Single event upsets (SEUs) are a threat to any computing system running on hardware that has not been physically radiation hardened. In addition to mandating the use of performance-limited, hardened heritage equipment, prior techniques for dealing with the SEU problem often involved hardware-based error detection and correction (EDAC). With limited computing resources, software- based EDAC, or any more elaborate recovery methods, were often not feasible. Synthetic aperture radars (SARs), when operated in the space environment, are interesting due to their relevance to NASAs objectives, but problematic in the sense of producing prodigious amounts of raw data. Prior implementations of the SAR data processing algorithm have been too slow, too computationally intensive, and require too much application memory for onboard execution to be a realistic option when using the type of heritage processing technology described above. This standard C-language implementation of SAR data processing is distributed over many cores of a Tilera Multicore Processor, and employs novel Radiation Hardening by Software (RHBS) techniques designed to protect the component processes (one per core) and their shared application memory from the sort of SEUs expected in the space environment. The source code includes calls to Tilera APIs, and a specialized Tilera compiler is required to produce a Tilera executable. The compiled application reads input data describing the position and orientation of a radar platform, as well as its radar-burst data, over time and writes out processed data in a form that is useful for analysis of the radar observations.

Holland, Matthew↗

Application of IRIG 106 Digital Data Recorder Standards for Flight Test

During flight tests, data is acquired from different sources and in different formats. Sensor data, aircraft avionics bus data, time, voice and video are essential for analysis of these flight tests. IRIG 106 standards exist for recording and transferring these data types. However, to enhance interoperability of flight test data between (multinational) test teams, a standard was needed to encapsulate all these data types. For this purpose the Telemetry Group of the Range Commanders Council (RCC) first published in 2004 the IRIG 106 Chapter 10 Standard, “Solid-State On-Board Recorder Standard”. This standard is evolving up to present. This AGARDograph gives an introduction to the standard, explains how the standard is positioned among other relevant standards, and describes the equipment and their application in flight tests with some examples. The topics covered include IRIG 106 Chapter 10 compatible recording of (multiple) data streams, synchronization of data, data recorders, data retrieval, data processing, and examples of flight test programs. Further development of the standard, originally published for on-board recorders, is described for extending the requirements for ground-based data recorders. The last chapter addresses a number of issues related to the application of the Chapter 10 standard with references to information and possible solutions. This document shows how data acquisition and data processing in accordance to IRIG 106 Chapter 10 standard can be applied in NATO flight tests and will thereby contribute to collaboration and cost efficiency.

flight test instrumentation↗

Advanced techniques and technology for efficient data storage, access, and transfer

Advanced techniques for efficiently representing most forms of data are being implemented in practical hardware and software form through the joint efforts of three NASA centers. These techniques adapt to local statistical variations to continually provide near optimum code efficiency when representing data without error. Demonstrated in several earlier space applications, these techniques are the basis of initial NASA data compression standards specifications. Since the techniques clearly apply to most NASA science data, NASA invested in the development of both hardware and software implementations for general use. This investment includes high-speed single-chip very large scale integration (VLSI) coding and decoding modules as well as machine-transferrable software routines. The hardware chips were tested in the laboratory at data rates as high as 700 Mbits/s. A coding module's definition includes a predictive preprocessing stage and a powerful adaptive coding stage. The function of the preprocessor is to optimally process incoming data into a standard form data source that the second stage can handle.The built-in preprocessor of the VLSI coder chips is ideal for high-speed sampled data applications such as imaging and high-quality audio, but additionally, the second stage adaptive coder can be used separately with any source that can be externally preprocessed into the 'standard form'. This generic functionality assures that the applicability of these techniques and their recent high-speed implementations should be equally broad outside of NASA.

Rice, Robert F.↗

The Parallel System for Integrating Impact Models and Sectors (pSIMS)

We present a framework for massively parallel climate impact simulations: the parallel System for Integrating Impact Models and Sectors (pSIMS). This framework comprises a) tools for ingesting and converting large amounts of data to a versatile datatype based on a common geospatial grid; b) tools for translating this datatype into custom formats for site-based models; c) a scalable parallel framework for performing large ensemble simulations, using any one of a number of different impacts models, on clusters, supercomputers, distributed grids, or clouds; d) tools and data standards for reformatting outputs to common datatypes for analysis and visualization; and e) methodologies for aggregating these datatypes to arbitrary spatial scales such as administrative and environmental demarcations. By automating many time-consuming and error-prone aspects of large-scale climate impacts studies, pSIMS accelerates computational research, encourages model intercomparison, and enhances reproducibility of simulation results. We present the pSIMS design and use example assessments to demonstrate its multi-model, multi-scale, and multi-sector versatility.

crop modeling↗

TRMM Data Mining Service at the Goddard Earth Sciences (GES) DISC DAAC Tropical Rainfall Measuring Mission (TRMM)

TRMM has acquired more than four years of data since its launch in November 1997. All TRMM standard products are processed by the TRMM Science Data and Information System (TSDIS) and archived and distributed to general users by the GES DAAC. Table 1 shows the total archive and distribution as of February 28, 2002. The Utilization Ratio (UR), defined as the ratio of the number of distributed files to the number of archived files, of the TRMM standard products has been steadily increasing since 1998 and is currently at 6.98.

Source record↗

Application of analytical redundancy management to Shuttle crafts

The study involves the bank of filters approach to analytical redundancy management since this is amenable to microelectronic implementation. Attention is given to a study of the UD factorized filter to determine if it gives more accurate estimates than the standard Kalman filter when data processing word size is reduced. It is reported that, as the word size is reduced, the effect of modeling error dominates the filter performance of the two filters. However, the UD filter is shown to maintain a slight advantage in tracking performance. It is concluded that because of the UD filter's stability in the serial processing mode, it remains the leading candidate for microelectronic implementation.

Montgomery, R. C.↗

The moderate resolution imaging spectrometer data system

Science requirements for a moderate resolution imaging spectrometer (MODIS) data system are outlined, as well as the operations concept and system specifications based on these requirements. Two systems are considered - MODIS-N for a 40-channel nadir-viewing scanner and MODIS-T for a 64-channel tiltable scanner. The first system collects data from 15 thermal-infrared channels at all times and from 25 reflected-energy channels during daytime, while MODIS-T will take data from 64 channels on a 100-percent duty cycle during daytime only. Standard data products, data acquisition and processing, and requirements on data are discussed. Emphasis is placed on the interfaces between the science data processing facilities and the scientific users.

Han, Daesoo↗

Time and frequency measuring metrological equipment in the USSR

The complex of the means of providing time and frequency traceability in the USSR includes the system of time and frequency standards of the National Time and Frequency Calibration Service, time and frequency transfer facilities and local time and frequency standards. Control on measurement correctness is performed by the All-Union State Standard calibration service. The hardware of most of the above-mentioned systems is provided by the instruments developed by our institute. A common scientific and technological approach allowed us to create a unified system of time-frequency equipment composed of widely used serial instruments, sets, automated systems and complexes. Primary frequency standards of different classes, time and frequency references and instruments are based on the unified system. CH1-70 hydrogen frequency standard and its CH1-70A, CH1-80 modifications are used in the group time and frequency standards. Measuring time and data processing techniques, and also instrumentation specifications on the results of 10-year operation are given. The existing system provides time-frequency measurements with 2 times 10(exp -13) plus or minus 1 times 10(exp -14) accuracy.

Uljanov, Adolph A.↗

Future Concepts for Realtime Data Interfaces for Control Centers

Existing methods of exchanging realtime data between the major control centers in the International Space Station program have resulted in a patchwork of local formats being imposed on each Mission Control Center. This puts the burden on a data customer to comply with the proprietary data formats of each data supplier. This has increased the cost and complexity for each participant, limited access to mission data and hampered the development of efficient and flexible operations concepts. Ideally, a universal format should be promoted in the industry to prevent the unnecessary burden of each center processing a different data format standard for every external interface with another center. With the broad acceptance of XML and other conventions used in other industries, it is now time for the Aerospace industry to fully engage and establish such a standard. This paper will briefly consider the components that would be required by such a standard (XML schema, data dictionaries, etc.) in order to accomplish the goal of a universal low-cost interface, and acquire broad industry acceptance. We will then examine current approaches being developed by standards bodies and other groups. The current state of CCSDS panel work will be reviewed, with a survey of the degree of industry acceptance. Other widely accepted commercial approaches will be considered, sometimes complimentary to the standards work, but sometimes not. The question is whether de facto industry standards are in concert with, or in conflict with the direction of the standards bodies. And given that state of affairs, the author will consider whether a new program establishing its Mission Control Center should implement a data interface based on those standards. The author proposes that broad industry support to unify the various efforts will enable collaboration between control centers and space programs to a wider degree than is currently available. This will reduce the cost for programs to provide realtime access to their data, hence reducing the cost of access to space, and benefiting the industry as a whole.

Kearney, Mike W., III↗

Compensation of Oxygen Transmittance Effects for Proximal Sensing Retrieval of Canopy-Leaving Sun-Induced Chlorophyll Fluorescence

Estimates of Sun-Induced vegetation chlorophyll Fluorescence (SIF) using remote sensing techniques are commonly determined by exploiting solar and/or telluric absorption features. When SIF is retrieved in the strong oxygen (O2) absorption features, atmospheric effects must always be compensated. Whereas correction of atmospheric effects is a standard airborne or satellite data processing step, there is no consensus regarding whether it is required for SIF proximal-sensing measurements nor what is the best strategy to be followed. Thus, by using simulated data, this work provides a comprehensive analysis about how atmospheric effects impact SIF estimations on proximal sensing, regarding: (1) the sensor height above the vegetated canopy; (2) the SIF retrieval technique used, e.g., Fraunhofer Line Discriminator (FLD) family or Spectral Fitting Methods (SFM); and (3) the instrument's spectral resolution. We demonstrate that for proximal-sensing scenarios compensating for atmospheric effects by simply introducing the O2 transmittance function into the FLD or SFM formulations improves SIF estimations. However, these simplistic corrections still lead to inaccurate SIF estimations due to the multiplication of spectrally convolved atmospheric transfer functions with absorption features. Consequently, a more rigorous oxygen compensation strategy is proposed and assessed by following a classic airborne atmospheric correction scheme adapted to proximal sensing. This approach allows compensating for the O2 absorption effects and, at the same time, convolving the high spectral resolution data according to the corresponding Instrumental Spectral Response Function (ISRF) through the use of an atmospheric radiative transfer model. Finally, due to the key role of O2 absorption on the evaluated proximal-sensing SIF retrieval strategies, its dependency on surface pressure (p) and air temperature (T) was also assessed. we combined simulated spectral data with p and T measurements obtained for a one-year period in the Hyytiala Forestry Field Station in Finland. Of importance hereby is that seasonal dynamics in terms of T and p, if not appropriately considered as part of the retrieval strategy, can result in erroneous SIF seasonal trends that mimic those of known dynamics for temperature-dependent physiological responses of vegetation.

"sun–induced chlorophyll fluorescence (SIF); pro↗

Evaluation of vicarious calibration for airborne sensors using RadCalNet

Vicarious calibration approaches using in-situ measurements are key techniques applied to on-orbit remote sensors. The in-situ measurements have advantages in terms of traceability and quantifiable accuracy that make them ideal for inter-consistency studies of on-orbit sensors. The Committee on Earth Observation Satellites Working Group on Calibration and Validation Infrared Visible Optical Sensors initiated the Radiometric Calibration Network (RadCalNet) to provide automated surface and top-of-atmosphere (TOA) reflectance data from multiple participating ground sites to the worldwide user community. RadCalNet standardizes protocols for collecting data, processes TOA reflectance, and provides International System of Units traceable uncertainty budgets for the five currently operating sites. RadCalNet data from the Railroad Valley Playa, Nevada, site was used to provide an SI-traceable, absolute radiometric calibration of the Enhanced MODIS Airborne Simulator as part of an overflight of opportunity during the FIREX-AQ campaign. The results shown here demonstrate the utility of RadCalNet data for absolute radiometric calibration of airborne imagers making flights of opportunity without the need for coordination with a field validation team.

Sensors↗

GeneLab: A Systems Biology Platform for Omics Analysis

NASA's GeneLab includes an open-access repository of some 200+ omics datasets generated by biological experiments relevant to spaceflight (including simulated cosmic radiation and microgravity). In order to maximize the intelligibility of these data, particularly for users with limited bioinformatics knowledge, GeneLab is now transforming the data in the repository into actual biological and physiological knowledge of the genetic and proteomic signatures found in these samples. This processed data is being derived by establishing standard data analysis workflows vetted by 114 scientists who are members of the four GeneLab Analysis Working Groups (Animal AWG, Plant AWG, Microbe AWG, Multi-Omics AWG). AWG members from institutes spanning the U.S. and four other countries participate on a voluntary basis. The AWGs meet monthly to discuss data mining, compare results and interpretations, and test forthcoming releases of the GeneLab Data Systems (GLDS). GLDS version 3.0 has been available to the general public since October 1st 2018, and has been providing a professional state-of-the-art bioinformatics platform for everyone in the space biology community to upload their data into a space biology omics data commons, to process their data with vetted standard workflows and to compare to existing analyses. The user interface for the platform is being designed to be accessible to a broad variety of users including those with limited bioinformatics experience, including high school and college students who can use it to learn about omics data analysis and space biology. As such, Genelab will constitute a powerful general public outreach capability of NASA and the Space Biology community at large. Data mining of the GeneLab database by the AWG has already started generating very interesting findings, including reports linking specific spaceflight conditions such as radiation, microgravity or carbon dioxide levels to molecular changes seen across various species. In this presentation, we will report on the current and future objectives for GeneLab, and review recent studies reported by the various AWGs relating molecular changes observed in various animal models and tissue with microgravity, radiation, circadian rhythm, hydration and carbon dioxide conditions.

Omics↗