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DOE OSTI2024

Data and scripts associated with the manuscript "Organic Molecules are Deterministically Assembled in River Sediments"

This data package is associated with the publication "Organic Molecules are Deterministically Assembled in River Sediments" submitted to Scientific Reports (Stegen et al., 2024). The study applies community ecology methods to dissolved organic matter (DOM) chemistry from variably inundated riverbed sediments to uncover principles governing DOM composition at a reach-scale. This data package documents the workflow used to process and generate the main findings in the manuscript. The R scripts reference the raw, unprocessed Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) data from another data package, available on ESS-DIVE at https://data.ess-dive.lbl.gov/view/doi:10.15485/1834208. The scripts then process the raw FTICR-MS data and generate the findings and figures presented in the associated manuscript. In brief, this study demonstrates that DOM assemblages in variably inundated sediments are primarily governed by deterministic variable selection, including sediment moisture effecting the degree of deterministic assembly. See the manuscript for more details pertaining to interpretation and implications of the findings. This data package is associated with the GitHub repository found at https://github.com/WHONDRS-Hub/ECA_2020_Sed.This data package is comprised of 6 scripts and 7 folders. The file-level metadata file (file ending in "flmd.csv") lists all files contained in this data package and descriptions for each. The data dictionary (file ending in "dd.csv) describes all tabular data columns and their respective definitions and units. The FTICR_Processing_Scripts produce the outputs found in the "Processed_Data" folder. The remaining scripts (located in the parent directory) produce the outputs found in the following four folders: (1) "MCD_Dendrograms", "MCD_Randomizations", "MCD_bNTI_Outcomes", and "OM_Null_Modeling". The fifth script additionally takes the three comma-separated values (CSV) files found in the parent directory as input ("VGC_texture.csv", "merged_weights.csv", and "ECA2_FTICR_BetaDisp.csv"). The outputs of each of the five scripts serve as the input to the following script, with the final outputs stored in the folder "OM_Null_Modeling".

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Estimated capital costs of fish exclusion technologies for hydropower facilities

Hydropower is a reliable source of renewable energy, and its future expansion is likely to be in the form of either smaller new stream development (NSD) projects or powering existing non-powered dams. Thresholds for entrainment risk to fish and the requirements for fish exclusion at hydropower facilities often differ depending on the species involved, the characteristics of the facility, and the goals of stakeholders, but little quantitative information is present within the literature regarding the specific costs of fish exclusion measures. Cost data associated with protection, mitigation, and enhancement (PM&E) measures related to positive barrier screening were identified using keyword searches of an existing environmental mitigation cost data set and manual extraction from regulatory licensing documents available in the Federal Energy Regulatory Commission (FERC) eLibrary. This approach yielded a total of 50 p.m.&E mitigation measures with estimated capital construction costs pertaining to positive barrier screens and represented <10% of the 171 total FERC project dockets available in the data set. These data were highly skewed toward conventional relicensing projects, as <7% were associated with NSD projects. Results indicate highly variable costs are associated with fish screening, with flow-normalized costs one to two orders of magnitude higher for screening with the highest exclusion capability (≤0.09 in. spacing) compared with coarser screening (1–2 in.). These data provide an initial baseline for estimating exclusion costs for hydropower development and may help developers consider options for more fish-friendly generation technologies, though gaps remain relating to a lack of data, particularly for NSD projects.

13 HYDRO ENERGY↗

DOE OSTI2020

Data-driven model construction for industrial asset decision boundary classification

In some embodiments, a system model construction platform may receive, from a system node data store, system node data associated with an industrial asset. The system model construction platform may automatically construct a data-driven, dynamic system model for the industrial asset based on the received system node data. A synthetic attack platform may then inject at least one synthetic attack into the data-driven, dynamic system model to create, for each of a plurality of monitoring nodes, a series of synthetic attack monitoring node values over time that represent simulated attacked operation of the industrial asset. The synthetic attack platform may store, in a synthetic attack space data source, the series of synthetic attack monitoring node values over time that represent simulated attacked operation of the industrial asset. This information may then be used, for example, along with normal operational data to construct a threat detection model for the industrial asset.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

System and method for characterization of air leakage in building using data from communicating thermostats and/or interval meters

Systems and methods for characterization of retrofit opportunities are described. Some embodiments are directed to methods for determining the air leakage rate of a building, and accordingly, for determining suitability of sealing of air leaks to improve the energy efficiency of a building. The methods may comprise computing, using at least one computing device disposed remote from a building and based at least in part on heating, ventilation and air conditioning (HVAC) runtime data associated with the building, one or more thermal characteristics of the building. The HVAC runtime data may be computed based on data received from a thermostat or a meter, such as an electric or a gas meter. To isolate the impact of air leakage, subsets of the HVAC runtime data at time intervals selected to have substantially the same conditions, but different wind speeds, may be computed.

Zeifman, Michael↗

DOE OSTI2023

Automated analysis of lattice structures using computed tomography

Systems, methods, and computer-readable media for evaluating a set of computed tomography data associated with a lattice structure. The lattice structure may be additively manufactured. The computed tomography data may be segmented using a filter for identifying blob-like structures to identify nodes present within the lattice structure. A three-dimensional path traversal is applied to volumetric data to identify a plurality of struts within the lattice structure that are compared to corresponding struts within a set if three-dimensional mesh data of the lattice structure to identify defective struts. Further, two-dimensional slices may be extracted from each of the computed tomography data and the mesh data and compared to identify one or more inconsistencies indicative of defects within the lattice structure.

Schiefelbein, Bryan E.↗

DOE OSTI2024

Automated analysis of lattice structures using computed tomography

Schiefelbein, Bryan E.↗

DOE OSTI2024

AquaPV: Foundational Analysis and Industry Guidance on Floating PV Results

This dataset contains results of the technical potential analysis of floating photovoltaics (FPV) on federally owned or permitted reservoirs in the United States. Estimates of the area of reservoirs that is technically feasible for FPV development are provided for reservoirs that are owned by the US Army Corps of Engineers or the US Bureau of Reclamation, or are associated with hydropower dams licensed by the Federal Energy Regulatory Commission. Other associated data are included, such as estimates of the potential evaporative losses of FPV development, and whether the waterbody is associated with an energy community or disadvantaged community that could qualify it for investment or production tax credits. Data is provided both as a spreadsheet and in a geospatial format including the waterbody geometries. Please read the included readme for more detailed field definitions.

area↗

DOE OSTI2026

The South Pole Telescope AGN Monitoring Campaign: First Release of SPTpol Bright AGN Light Curves

The South Pole Telescope (SPT) collaboration has recently embarked upon a campaign to monitor the brightness of a sample of active galactic nuclei (AGN), both in real time and in archival SPT data. The original design of the SPT was optimized for observations of the cosmic microwave background (CMB) at arc-minute and larger angular scales, and it has been used for this purpose for nearly twenty years, using three generations of CMB cameras. Recently it has been recognized that data from CMB experiments have the potential to be used for AGN monitoring. In this paper, we present the first public release of data from a full sample of SPT-monitored AGN, comprising 158 AGN light curves and associated data from the SPTpol camera, which was operational from 2012-2016. These light curves were created using observations from the SPTpol 500 deg$^{2}$ survey, in which the instrument was used to scan a 500 deg$^2$ patch of the sky several times per day with detectors sensitive to radiation in bands centered at 90 and 150 GHz. We provide a comprehensive description of the observations, the data processing methods, and the resulting light curve catalog. As an example of analyses that these data enable, we searched for a correlation between variability and spectral index, and we looked for ``bluer-when-brighter'' trends in the sample. Our analysis finds $> 10 σ$ correlation between fractional intrinsic variance and mean spectral index in the sample, but no significant evidence for bluer-when-brighter trends. The datasets from this study can be accessed through the SPT Treasury Record of AGN With Historical Activity and Time-Series or STRAWHAT catalog. This initial data release includes SPTpol light curves at 90 and 150 GHz, focusing on total intensity. In later updates, SPTpol polarization data and new observations from the SPT-3G instrument at 90, 150, and 220 GHz will be included.

Hood, J.C., II [Chicago U., KICP; Chicago U., Astr↗

DOE OSTI2025

Data and scripts associated with “Allometric scaling of hyporheic respiration across basins in the Pacific Northwest USA"

This data package is associated with the publication “Allometric scaling of hyporheic respiration across basins in the Pacific Northwest USA” submitted to JGR-Biogeosciences (Regier et al. 2025).This study used reach-scale modeled estimates of hyporheic aerobic respiration made by the River Corridor Model (Fang et al. 2020) and watershed characteristics across the Willamette and Yakima River basins to explore potential allometric scaling (i.e., power-law relationships between size and function) of cumulative hyporheic respiration across catchment-to-basin scales. Scaling was explored quantitatively via the R2, slope, and y-intercept of relationships between cumulative hyporheic respiration and watershed area, divided into hyporheic exchange flux (HEF) quantiles. We also explored relationships between allometric scaling and other watershed characteristics through linear regression, spatial patterns, and mutual information analyses. Our results also suggest variability of hyporheic respiration allometry for middle exchange flux quantiles, and in relation to land-cover. Our findings provide initial evidence that allometric scaling may be useful for predicting hyporheic biogeochemical dynamics across watersheds from reach to basin scales. This data package is associated with the GitHub repository found at https://github.com/peterregier/rc_wrb_yrb_scaling. The data package is organized into several key directories. The “data” folder contains multiple CSV files, including landscape heterogeneity, scaling analysis, and watershed boundary data. The “figures” folder has all figure files in both PDF and PNG formats. Core analysis scripts and figure generation scripts are in the “scripts” directory, systematically numbered for sequential execution. The root directory includes essential project files; please see the file ending in “flmd.csv” for a list and description of all files contained in this data package and the file ending in “dd.csv” for data dictionaries used to describe tabular column headers.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Detailed space–time variations of the seismic response of the shallow crust to small earthquakes from analysis of dense array data

SUMMARY We compute high-resolution space–time variations of subsurface seismic properties from autocorrelation functions (ACF’s) of noise and local earthquakes, recorded by the Sage Brush Flat dense array deployed around the Clark branch of the San Jacinto fault. The resolved temporal changes are referred to as apparent velocity changes because they reflect both nonlinear response and variations of material properties such as cracking and damage. Apparent velocity changes are estimated at four frequency bands (10–15, 10–20, 15–30 and 20–40 Hz) for two local earthquake data sets. In one analysis, ACF’s from P- and S-wave windows of 31 small events with magnitudes below 3.1 are used to compute the apparent velocity variations with respect to the mean ACF of each phase, and we also use the mean ACF of noise data as reference to estimate the changes. In a further analysis, the temporal evolution of properties is computed using moving time windows in continuous waveform over one-hour long data with noise and earthquake signals. The apparent velocity changes and recovery times are frequency dependent and present a strong spatial variability across the array. The resolved changes are larger and recovery time shorter with data associated with higher frequencies. At frequencies larger than 15 Hz, and using the mean ACF of noise data as a reference, the apparent average velocity changes across the array during the passage of the P and S waves from the small local events are 2.5 per cent and 6 per cent, respectively. The apparent velocity changes decrease by one order of magnitude when the earthquake data are used as a reference. The relatively large changes in response to very low ground motion have important implications on nonlinear processes involving degradation and healing of the subsurface material during common earthquake shaking.

Geochemistry & Geophysics↗

DOE OSTI2024

Faraday: A High-temperature Electrolysis Data Explorer

Faraday is a high-temperature electrolysis data visualization tool, which reveals the performance of various button cells under test conditions. These tests and the resulting analytics on their data constitute a state of the industry as the US Department of Energy pushes for the production of hydrogen. Faraday leverages the Idaho National Laboratory's DeepLynx data warehouse to standardize and query button cell data. Faraday programmatically accesses this data in DeepLynx by traversing the schema, represented by a custom ontology. The user interface queries DeepLynx for timeseries data associated with specific button cells in the warehouse, and renders them using JavaScript charts. Additional charting and data analysis techniques are made possible by an auxiliary Python server.

Woodruff, Nathan↗

DOE OSTI2022

Deep Lynx Unidirectional Network Connector

The Deep Lynx UNC is a small utility written in Python that uses only basic Python libraries and the Deep Lynx Python Software Development Kit (SDK). It queries Deep Lynx for tasks that indicate some data to be run in the UNC's environment. Once a task is acquired, the UNC retrieves the associated data and provides it to some other application for processing, waits for output, and sends the output from the other application to Deep Lynx. As data flows only from the UNC to Deep Lynx, this software solves the problem of connecting Deep Lynx with applications and resources that exist in a network where the network can reach Deep Lynx, but Deep Lynx cannot reach that network (unidirectional network).

Browning, JerenM↗

DOE OSTI2025

The Pan-Arctic Vegetation Cover (PAVC) database v1.1

The Pan-Arctic Vegetation Cover (PAVC) database contains synthesized field-data observations of vegetation cover from 978 Arctic Alaska plots with observations from 2010 to 2021. The cover datasets contain plot data at both the plant functional type (PFT) and species-level resolution, with standardized PFT definitions and species names. We synthesized publicly available point-intercept and visual estimate plots from the Arctic Vegetation Archive of Alaska, the Alaska Vegetation Plots Database, the North Slope Science Catalog, and the National Ecological Observatory Network; as well as previously unpublished data from the Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic).Users will find four synthesized datasets, 4 associated data descriptor (dd) files, and 1 metadata file in the PAVC database:synthesized_species_fcover.csv contains fractional cover (fcover) for unique accepted species names, where names include vegetation identified at the family, genus, species, subspecies, and variety levels, as well as general functional types across all 5 data sources. The synthesized_species_fcover_dd.csv accompanies this dataset with header information.synthesized_pft_fcover.csv contains fcover for the following PFTs: non-vascular plants with lichen and bryophyte subcategories, trees with deciduous and evergreen subcategories, shrubs with deciduous and evergreen subcategories, graminoids (grasses), and forbs (herbaceous flowering plants) measured as total cover. Litter and “other” cover are also included as total cover. Additional “types” include water and bare ground, which were measured as top cover. The synthesized_pft_fcover_dd.csv accompanies this dataset with header information.species_pft_checklist.csv is a lookup table containing the translation from a dataset species name to an accepted species name and to a PFT. This table can be used to clarify our species to PFT adjudications, and to aid users in assigning their own PFTs. Any issues found in this checklist should be reported in the Issues tab of our github.survey_unit_information.csv contains auxiliary information about the plots synthesized in this database. It contains useful information for filtering plots of interest based on temporal, geospatial, and contextual information about the plot surveys.flmd.csv contains metadata information about each file in the database.This research was performed as a part of the NGEE Arctic project. The NGEE Arctic project was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Assessment of Contaminant Bioaccumulation in Aquatic Biota on and Adjacent to the Oak Ridge Reservation—2020

This report provides information on contaminant concentrations in multiple wildlife prey species inhabiting or associated with water bodies on and downstream from the Oak Ridge Reservation (ORR), including regional reference sites. This information can be used to understand the nature and extent of contaminant exposure and transfer through the food web and to provide a baseline for evaluating temporal trends in contaminant exposure and accumulation. This information was gathered as part of the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) Five-Year Review (FYR) process, and it also addresses regulator comments on the annual Remediation Effectiveness Report (RER). This report summarizes the results of biological sampling completed in the spring and summer of 2020, prior to the 2021 FYR. Sampled locations included key sites upstream from the point sources of contaminants, along with watershed integration points on and off the ORR. Integration points are spatially the most important sampling sites because they capture biological responses to upstream contaminant inputs from both aqueous and groundwater sources, as well as responses to various remedial actions. These sites are most often located at a watershed administration unit boundary and may have regulatory significance for performance measures. In many cases, there are long-term biological and other monitoring data associated with these sites; these data generally fall within the areas of exposure and effects.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Nevada Higher Education Benefits from US Department of Energy (DOE) Environmental Management (EM) Nevada Program's Transfer of Geologic Samples - 20442

The Nevada National Security Site (NNSS), formerly the Nevada Test Site, was the location of 100 historic atmospheric and 828 historic underground nuclear tests from 1951 to 1992. Related to this historic nuclear testing, geologic and hydrologic studies of the site were conducted utilizing the skills and the expertise of the U.S. Geological Survey (USGS) and national laboratories (Los Alamos National Laboratory, Lawrence Livermore National Laboratory), who were principal in leading the development of weapons and were responsible for specific underground testing programs. The subsurface samples and technical/scientific data associated with NNSS geologic studies (past and present) are preserved and stored at the USGS Mercury Core Library and Data Center located at the NNSS. Currently, the facility stores over 2,000,000 linear feet of cores and cuttings from more than 2,600 drill holes that can be accessed for study. Most of the samples and historic geologic work was focused directly on subsurface geologic settings that relate directly to historic underground nuclear testing. Since 1992, the United States has observed a unilateral moratorium on full-scale nuclear testing, and the U.S. Department of Energy (DOE) Environmental Management (EM) Nevada Program is now responsible for hydrogeologic characterization of the potential impacts to the natural groundwater systems that may have resulted from historic underground nuclear tests. As part of this effort, the EM Nevada Program Underground Test Area (UGTA) Activity has drilled and completed over 58 deep (2,000 - 7,000 ft.) characterization wells, totaling in excess of 170,000 linear feet of cuttings and core samples. Cutting samples were collected as triplicate samples for each respective depth interval, to account for potential later nondestructive/destructive analysis and to preserve samples for regulatory purposes. Recently, it was recognized by the EM Nevada Program that opportunities may exist to reduce the cost and floor space required for the storage of geologic samples at the Mercury Core Library without impacting the integrity and representative nature of the samples necessary for project execution. An initiative was sponsored by EM Nevada Program to evaluate several options: 1) disposal of a portion of cuttings and cores in a land fill setting; 2) reduction in sample volume through skeletonizing core and cuttings from wells to a representative but much smaller number of samples; and 3) solicit potential interest in the academic community where other geoscientists could freely access the samples for studies. The Nevada state university system through the Nevada Bureau of Mines and Geology responded positively to the opportunity to receive these NNSS samples from the EM Nevada Program. In June 2019, approximately 17,000 geologic samples, representing greater than 170,000 linear feet of drilling and weighing over 20,000 pounds, were shipped from the NNSS to the Great Basin Science Sample and Records Library located in Reno, Nevada. The benefits resulting from this transfer were realized by the EM Nevada Program in terms of cost and space savings for geologic sample storage at the NNSS. The transfer did not impact the EM Nevada Program mission as access to representative geologic samples for regulatory and scientific purposes was preserved. Moreover, the Nevada Bureau of Mines and Geology acquired a significant resource of subsurface geologic samples and supporting technical data to support academic and scientific studies in a complex volcanic setting in southwest Nevada. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2024

Data and scripts associated with “Riverine dissolved organic matter transformations increase with watershed area, water residence time, and Damköhler numbers in nested watersheds” (v2)

This data package is associated with the publication “Riverine dissolved organic matter transformations increase with watershed area, water residence time, and Damköhler numbers in nested watersheds” submitted to Biogeochemistry by Ryan et al., 2024 (DOI: https://doi.org/10.1007/s10533-024-01169-5). This study aims to investigate fundamental and transferable drivers of dissolved organic matter (DOM) diversity across five nested watersheds within the contiguous United States. DOM diversity was explored using ultrahigh-resolution Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS). The samples and the unprocessed FTICR-MS data used in this study are publicly available on the Environmental System Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE) data repository (see DOIs below). The data for the Willamette, Gunnison, Connecticut, and Deschutes basins were collected as part of a collaboration between the Watershed Rules of Life (WROL) project and Worldwide Hydrobiogeochemistry Observation Network for Dynamic River Systems (WHONDRS). The data for the Yakima River basin (YRB) was collected by the PNNL River Corridor SFA. The raw, unprocessed FTICR-MS data with additional (meta)data can be found at doi:10.15485/1895159 for WROL samples and doi:10.15485/1898912 for YRB samples. This data package contains the processed data used in the associated manuscript. This package also contains ancillary geospatial, hydrological, and geochemical information that supports the interpretation of the FTICR-MS data within Ryan et al., 2024. This data package is associated with the GitHub repository found at https://github.com/WHONDRS-Hub/rcsfa-RC4-WROL-YRB_DOM_Diversity. This data package was originally published August 2024. It was updated January 2025 (modified files). See the change history in the readme more details. At the directory level, the data package is comprised of three folders: (1) data, (2) output, and (3) src; and five additional files including the data dictionary (file ending in "_dd.csv”) and file-level metadata (file ending in “_flmd.csv”). The “src” folder contains the scripts used to process the FTICR data, conduct the analyses, and produce the manuscript figures. The inputs for these scripts are in the “data” folder and the returned outputs in the “output” folder. Inputs include temporal and spatial metadata associated with the sampling efforts, processed FTICR data, and total and normalized putative biochemical transformations per sample. Outputs include cleaned and combined data presented as tables, descriptive statistics, and plots. The file-level metadata file lists all files contained in this data package and descriptions for each. The data dictionary describes the units and definitions for each tabular data column or row header.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Aspen ploidy level and cover maps from NEON Airborne Observation Platform, 2018, Crested Butte, Colorado

Maps of aspen ploidy (diploid or triploid) developed using National Ecological Observatory Network (NEON) Airborne Observation Platform visible to shortwave infrared imaging spectroscopy data that were acquired over the Upper East River, Colorado in 2018. Maps of aspen distribution, as well as other land cover types that were used to screen for aspen dominated pixels are also provided. Each image file is provided as a GeoTiff with internal tiling and LZW compression. For use of ploidy maps, it is necessary to mask out non-aspen and shaded pixels. Shaded pixels are provided in an associated data package. For full details, please see associated publication and methods description. This dataset is associated with the publication in Ecological Applications.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2026

GenomeDepot: data management system for microbial comparative genomics

Summary GenomeDepot is an open-source web-based platform for annotation, management, and comparative analysis of microbial genomic sequences and associated data including ortholog families, protein domains, operons, regulatory interactions, strain taxonomy, and sample metadata. GenomeDepot supports rapid creation of websites for user-defined genome collections that include bioinformatic tools for interactive genome browsing, Basic Local Alignment Search Tool (BLAST) search, annotation search, comparative genomic neighborhood visualization, and sequence download. Gene function annotations are generated by a customizable annotation pipeline. The pipeline runs annotation tools in Conda environments and can be easily extended with additional user-specified tools. Availability and implementation GenomeDepot is open source and distributed under the GNU General Public License via GitHub (https://github.com/aekazakov/genome-depot). GenomeDepot is implemented in Python and was tested in Ubuntu Linux. Full installation instructions and documentation are available at https://aekazakov.github.io/genome-depot/. GenomeDepot demo server is freely accessible at https://iseq.lbl.gov/demogd/.

Kazakov, Alexey [Lawrence Berkeley National Labora↗