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At least 91 records · Page 5

Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses

Thermophily is a trait scattered across the fungal tree of life, with its highest prevalence within three fungal families (Chaetomiaceae, Thermoascaceae, and Trichocomaceae), as well as some members of the phylum Mucoromycota. We examined 37 thermophilic and thermotolerant species and 42 mesophilic species for this study and identified thermophily as the ancestral state of all three prominent families of thermophilic fungi. Thermophilic fungal genomes were found to encode various thermostable enzymes, including carbohydrate-active enzymes such as endoxylanases, which are useful for many industrial applications. At the same time, the overall gene counts, especially in gene families responsible for microbial defense such as secondary metabolism, are reduced in thermophiles compared to mesophiles. We also found a reduction in the core genome size of thermophiles in both the Chaetomiaceae family and the Eurotiomycetes class. The Gene Ontology terms lost in thermophilic fungi include primary metabolism, transporters, UV response, and O-methyltransferases. Comparative genomics analysis also revealed higher GC content in the third base of codons (GC3) and a lower effective number of codons in fungal thermophiles than in both thermotolerant and mesophilic fungi. Furthermore, using the Support Vector Machine classifier, we identified several Pfam domains capable of discriminating between genomes of thermophiles and mesophiles with 94% accuracy. Using AlphaFold2 to predict protein structures of endoxylanases (GH10), we built a similarity network based on the structures. We found that the number of disulfide bonds appears important for protein structure, and the network clusters based on protein structures correlate with the optimal activity temperature. Thus, comparative genomics offers new insights into the biology, adaptation, and evolutionary history of thermophilic fungi while providing a parts list for bioengineering applications.

59 BASIC BIOLOGICAL SCIENCES↗

Characterization and automated optimization of laser-driven proton beams from converging liquid sheet jet targets

Compact, stable, and versatile laser-driven ion sources hold great promise for applications ranging from medicine to materials science and fundamental physics. While single-shot sources have demonstrated favorable beam properties, including the peak fluxes necessary for several applications, high-repetition-rate operation will be necessary to generate and sustain the high average flux needed for many of the most exciting applications of laser-driven ion sources. Further, to navigate through the high-dimensional space of laser and target parameters toward experimental optima, it is essential to develop ion acceleration platforms compatible with machine learning techniques and capable of autonomous real-time optimization. Here, we present a multi-Hz ion acceleration platform employing a liquid sheet jet target. We characterize the laser-plasma interaction and the laser-driven proton beam across a variety of key parameters governing the interaction using an extensive suite of online diagnostics. We also demonstrate real-time, closed-loop optimization of the ion beam maximum energy by tuning the laser wave front using a Bayesian optimization scheme. This approach increased the maximum proton energy by 11% compared to a manually optimized wave front by enhancing the energy concentration within the laser focal spot, demonstrating the potential for closed-loop optimization schemes to tune future ion accelerators for robust high-repetition-rate operation.

Glenn, G. D. [SLAC National Accelerator Laboratory↗

The Role of Subcloud Mesoscale Convergence in Sculpting Convective Updraft Width and Depth

The initiation of deep moist convection is governed in part by the horizontal width of updrafts near cloud base, which limits the deleterious effects of entrainment-driven dilution on buoyant thermals ascending through the free troposphere. However, the factors controlling cloud-base updraft width, which in turn dictates cloud depth, are not well understood. We track the evolving three-dimensional structure of the mesoscale subcloud forcing for vertical motion and near-cloud thermodynamic ingredients within a high-resolution ensemble of simulations of seven realistic daytime orographic convection initiation events to determine their relative roles in controlling cloud width and depth. Statistical analysis of approximately 5000 cloudy updraft samples indicates that the most important contributors to the width of cloudy updrafts across the ensemble are the depth and magnitude of the subcloud mesoscale ascent. However, the depth achieved by clouds is more consistently predicted by the near-cloud ambient relative humidity within the lower to middle free troposphere and convective available potential energy. Therefore, although the width of cloudy updrafts may be partly set at low levels by the mesoscale vertical mass and moisture flux, the likelihood of deep moist convection is governed by the generation of positive buoyancy within cumulus thermals and entrainment-driven dilution that reduces it. The persistence of the low-level mesoscale vertical forcing locally consolidates and vertically transports boundary layer moisture, helping to reduce updraft dilution. However, these factors vary in relative impacts on cloudy updrafts across individual cases, indicating multiple pathways for deep convection initiation.

Convective storms↗

Convergence of Emerging Technologies - OWL Test Results

The OWL GroundAware GA1360 2D radar system with advertised capability of advanced digital beam-forming radar technology, classification intelligence, reconfigurability, and easy integration with other security systems to bring 360° of real-time, all-weather situational awareness for the physical security of perimeters and other sensitive areas for critical infrastructure.

47 OTHER INSTRUMENTATION↗

Convergence of Emerging Technologies - Spotter Test Results

The SpotterRF CK5 is a low-power draw doppler radar, approximately the size of a book (7” x 9”, see Figure 1). It is intended to provide coverage over short ranges (125 m). The SpotterRF CK5B radar was tested in a two-fence perimeter environment and followed the vendor-recommended configuration (Figure 2), with the exception of rotating the radar 90 degrees about the horizontal axis. The radar is advertised to take approximately 10 minutes to set up.

47 OTHER INSTRUMENTATION↗

Convergence of Emerging Technologies - Magos Test Results

The Magos SR-1000 is a ground surveillance radar with an advertised detection range up to 1000 meters for a walker, vehicle, or boat at a low power consumption of 11 Watts. Figure 1 shows the Magos SR-1000 installed at Sandia’s Security Technology Test and Evaluation Center (STEC); testing was performed from May-July 2024. Figure 2 shows a close-up of the device.

47 OTHER INSTRUMENTATION↗

Convergence of Emerging Technologies - EAGL Test Information

The Emergency Automatic Gunshot Detection and Lockdown (EAGL) system provides automatic, autonomous, and timely gunshot detection in both indoor and outdoor environments. This system uses both wired and wireless devices. Self-contained wireless EAGL sensors passively “listen” for gunshot events. These devices also perform a single, daily supervisory heartbeat (HB) function to include a device self-check with reporting capability. Transmissions are received by an assigned EAGL Gateway, which translates the RF sensor data to a PoE network format solely for use by the EAGL system server. The server then performs additional processes after data receipt, which include but are not limited to: event validation and logging, GUI presentation, notifications, and other independent operations.

47 OTHER INSTRUMENTATION↗

Convergence of Emerging Technologies - Blickfeld Test Results

The Blickfeld Cube 1 Lidar is an inexpensive flash lidar being developed for autonomous navigation with an advertised maximum range of 75 meters that uses a Class 1 eye-safe laser. Figure 1 shows an example of the installation of the Cube 1 lidar and Figure 2 shows an example of the point cloud generated, with the red circle indicating an intruder. The Cube 1 lidar has a software adjustable field of view and as many as 5 lidars can be stitched together. (Figure 2 shows two Cube 1 lidars stitched together.)

47 OTHER INSTRUMENTATION↗

Overview of NLR Automated Mobility District Implementation Research - Phases I, II, and III. The Convergence of Automation, Electrification, and On-Demand Services: Enabling Resilient Automated Mobility Districts

A research program by the National Renewable Energy Laboratory has been investigating the implementation prospects for fully automated passenger transport systems that are deployed to operate within dense urban settings, referred to as Automated Mobility Districts (AMDs). An AMD emphasizes the deployment of automated vehicles (AV) passenger transport services within a dense urban setting and other major activity centers with intense passenger origin-destination demand patterns, such as those found in large business districts, airports, and university and medical campuses. Phase I and II surveyed 10 early deployment sites and subsequently collected and evaluated the lessons learned from these early deployment sites, with particular attention to fleet operations, impacts of service reliability, and vehicle technology evolution as the field of companies was being progressively winnowed by the challenges of full automation.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Planning for Seattle at the Convergence of Resilience and Energy

Grid reliability metrics obscure important temporal, spatial, and categorical considerations for increasing energy resilience. Systemwide or feeder-level outage metrics do not identify which kinds of services are affected by outages, where, and for how long. These outage metrics indicate the impacts of outages but cannot measure the consequences to customers that could result from those outages. The consequences of power outages for surrounding community members are caused by disruptions to electricity-dependent critical services, rather than to electricity itself. Power outages can decrease a community's access to healthcare, fuel, safe indoor temperatures, and provisions like food and water. This project developed critical service access, a new consequence-focused resilience metric that quantifies the relative access to critical services provided to households by distribution infrastructure during normal conditions and major disruptions. We use a spatially granular grid analysis that facilitates targeted resilience interventions; dividing feeders into isolatable sections and combining those sections with the critical service access metric allows us to identify where energy improvements like solar-plus-storage microgrids could create the most benefits for community members by protecting access to food, fuel, health, shelter, and public safety services. We identify locations in a South Seattle study area that could be high priorities for resilience investment and summarize their potential neighborhood-scale resilience benefits. This analysis was complemented by direct feedback from study area residents collect through a survey and focus groups. Results can help utilities understand how and where long power outages can create real consequences for customers, set strategic targets based on that understanding, and measure the potential benefits of energy resilience upgrades for more informed decisions.

14 SOLAR ENERGY↗

Estuarine hurricane wind can intensify surge-dominated extreme water level in shallow and converging coastal systems

Based on the projected increase in hurricane landfall frequency on the middle to lower US east coast, we examined the crucial role of the estuarine wind field in exacerbating coastal flooding. A regionally refined atmospheric and two high-resolution hydrology and ocean models are integrated to provide plausible and physically consistent ensembles of hurricane events and the associated flooding inside the Delaware Bay and River, a US mid-Atlantic estuary. Model results show that the hurricane propagation direction, estuarine geometry, remote surge from the open ocean, and direct nearshore upwind stress could magnify the flood magnitude. More specifically, inland-bound tracks that make landfall before reaching the mid-Atlantic coast produce a more significant surge within Delaware Bay than the shore-parallel tracks, where the estuarine wind direction plays the primary role in surge amplification. Ultimately, this study emphasized the need for integrated models to capture the nonlinear dynamics and interactions in flood hazard modeling.

54 ENVIRONMENTAL SCIENCES↗

Removing Basis Set Incompleteness Error in Finite-Temperature Electronic Structure Calculations: Two-Electron Systems

We investigate the basis-set-size dependence for quantities related to interacting electrons in the canonical ensemble. Calculations are performed using exact diagonalization (finite temperature full configuration interaction method) on two-electron model systems–the uniform electron gas (UEG) and the helium atom. Our data reproduce previous observations of a competition for how the internal energy converges between the ground-state correlation energy and the high-temperature kinetic energy. We explore how this can be related to component parts of the internal energy including kinetic, exchange, and correlation energies and show there is surprising nuance in how this can be broken down into mostly monotonically converging quantities. We also show that separation of the free energy into a free energy with/without correlation allows for monotonic convergence with basis set size due to the variational principle. We find that the free energy convergence matches the previously observed convergence properties of the internal energy. We discuss the free energy divergence that happens when converging a finite basis analytical hydrogen atom to the complete basis set limit and compare this to the energies of a helium atom in a large periodic box. Reducing the box size, we saw convergence trends for the helium atom that were similar to the UEG.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Microbiome dynamics in the congregate environment of U.S. Army Infantry training

Within military training and operational environments, individuals from diverse backgrounds share common spaces, follow structured routines and diets, and engage in physically demanding tasks. While there has been interest in leveraging microbiome features to predict and improve military health and performance, the longitudinal convergence of microbiomes in such constrained environments has not been established. To assess the degree of microbiome convergence, we performed shotgun metagenomic sequencing on swab samples from a military trainee cohort. Samples were taken across four different body sites, three timepoints, and two spatially distinct platoons. We observed evidence of convergence in one platoon, whereby similarity in microbiome composition increased over time, with numerous differentially abundant species. We found no indication of strain transfer between individuals, suggesting that convergence was influenced by external environmental factors, diet, and lifestyle. Microbial shifts observed in the convergence process included a decrease in fungal species, such as Malassezia restricta in nasal cavities, and a decrease in Prevotella species at inguinal regions across time. Shifts in multiple Corynebacterium species were also observed with varying magnitudes depending on the body site. Overall, we provide preliminary evidence of convergence of host microbial communities in military-associated environments that were distinguishable using shotgun metagenomic sequencing approaches. The data presented here on microbiome convergence, dynamics, and stability may inform risk-based mitigation in congregate military settings facilitating development of targeted microbial, dietary, or other interventions to optimize health and performance of military populations.

Biological and medical sciences↗