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DOE OSTI2021

Poisson_CCD: A dedicated simulator for modeling CCDs

A dedicated simulator, Poisson_CCD, has been constructed which models astronomical CCDs by solving Poisson’s equation numerically and simulating charge transport within the CCD. The potentials and free carrier densities within the CCD are self-consistently solved for, giving realistic results for the charge distribution within the CCD storage wells. The simulator has been used to model the CCDs that are being used to construct the LSST digital camera. The simulator output has been validated by comparing its predictions with several different types of CCD measurements, including astrometric shifts, brighter-fatter induced pixel–pixel covariances, saturation effects, and diffusion spreading. The code is open source and freely available.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2022

Equilibrium reconstruction of DIII-D plasmas using predictive modeling of the pressure profile

New workflows have been developed for predictive modeling of magnetohydrodynamic (MHD) equilibrium in tokamak plasmas. The goal of this work is to predict the MHD equilibrium in tokamak discharges without having measurements of the kinetic profiles. The workflows include a cold start tool, which constructs all the profiles and power flows needed by transport codes; a Grad–Shafranov equilibrium solver; and various codes for the sources and sinks. For validation purposes, a database of DIII-D tokamak discharges has been constructed that is comprised of scans in the plasma current, toroidal magnetic field, and triangularity. Initial efforts focused on developing a workflow utilizing an empirically derived pressure model tuned to DIII-D discharges with monotonic safety factor profiles. This workflow shows good agreement with experimental kinetic equilibrium calculations, but is limited in that it is a single fluid (equal ion and electron temperatures) model and lacks H-mode pedestal predictions. The best agreement with the H-mode database is obtained using a theory-based workflow utilizing pressure profile predictions from a coupled TGLF turbulent transport and EPED pedestal models together with external magnetics and Motional Stark Effect (MSE) data to construct the equilibrium. Here, we obtain an average root mean square error of 5.1% in the safety factor profile when comparing the predicted and experimental kinetic equilibrium. We also find good agreement with the plasma stored energy, internal inductance, and pressure profiles. Including MSE data in the theory-based workflow results in noticeably improved agreement with the q-profiles in high triangularity discharges in comparison with the results obtained with magnetic data only. The predictive equilibrium workflow is expected to have wide applications in experimental planning, between-shot analysis, and reactor studies.

Kinsey, J. E. (ORCID:0000000193347473)↗

DOE OSTI2020

Multigroup Constant Calculation with Static α-Eigenvalue Monte Carlo for Time-Dependent Neutron Transport Simulations

Herein, multigroup constants for deterministic methods that preserve the time-dependent physics of the neutron transport equations are derived. Alternative multigroup constant weighting spectra are discussed: (1) the fundamental k-eigenfunction, (2) the fundamental α-eigenfunction, and (3) a composite of several α-modes. To generate the fundamental α-eigenfunction for calculating the multigroup constants, a static fundamental α-eigenvalue method is implemented into the open source Monte Carlo code OpenMC. Several static and kinetic problems are devised to verify the implementations and to investigate the relative performance of the alternative multigroup constant weighting spectra. Results emphasize that as a multigroup constant weighting spectrum, the fundamental α-eigenfunction offers physical characteristics that make it advantageous (in producing accurate solutions) over the typically used fundamental k-eigenfunction.

42 ENGINEERING↗

DOE OSTI2023

Parallel simulation via SPPARKS of on-lattice kinetic and Metropolis Monte Carlo models for materials processing

Abstract SPPARKS is an open-source parallel simulation code for developing and running various kinds of on-lattice Monte Carlo models at the atomic or meso scales. It can be used to study the properties of solid-state materials as well as model their dynamic evolution during processing. The modular nature of the code allows new models and diagnostic computations to be added without modification to its core functionality, including its parallel algorithms. A variety of models for microstructural evolution (grain growth), solid-state diffusion, thin film deposition, and additive manufacturing (AM) processes are included in the code. SPPARKS can also be used to implement grid-based algorithms such as phase field or cellular automata models, to run either in tandem with a Monte Carlo method or independently. For very large systems such as AM applications, the Stitch I/O library is included, which enables only a small portion of a huge system to be resident in memory. In this paper we describe SPPARKS and its parallel algorithms and performance, explain how new Monte Carlo models can be added, and highlight a variety of applications which have been developed within the code.

36 MATERIALS SCIENCE↗

DOE OSTI2020

Machine learning enabled discovery of application dependent design principles for two-dimensional materials

Abstract The unique electronic and mechanical properties of two-dimensional (2D) materials make them promising next-generation candidates for a variety of applications. Large-scale searches for high-performing 2D materials are limited to calculating descriptors with computationally demanding first-principles density functional theory. In this work, we alleviate this issue by extending and generalizing crystal graph convolutional neural networks to systems with planar periodicity and train an ensemble of models to predict thermodynamic, mechanical and electronic properties. We carry out a screening of nearly 45,000 structures for two separate applications: mechanical strength and photovoltaics. By collecting statistics of the screened candidates, we investigate structural and compositional design principles that impact the properties of the structures surveyed. Our approach recovers some well-accepted design rules: hybrid organic-inorganic perovskites with lead and tin tend to be good candidates for solar cell applications and titanium based MXenes usually have high stiffness coefficients. Interestingly, other members of the group 4 elements also contribute to increasing the mechanical strength of MXenes. For all-inorganic perovskites, we discover some compositions that have not been deeply studied in the field of photovoltaics and thus open up paths for further investigation. We open-source the code-base to spur further development in this space.

Venturi, Victor (ORCID:0000000156727549)↗

DOE OSTI2018

International Neuroscience Initiatives through the Lens of High-Performance Computing

Neuroscience initiatives aim to develop new technologies and tools to measure and manipulate neuronal circuits. In this paper, to deal with the massive amounts of data generated by these tools, the authors envision the co-location of open data repositories in standardized formats together with high-performance computing hardware utilizing open source optimized analysis codes.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2015

SU-E-T-608: Perturbation Corrections for Alanine Dosimeters in Different Phantom Materials in High-Energy Photon Beams

Purpose: Alanine dosimeters are often used for in-vivo dosimetry purposes in radiation therapy. In a Monte Carlo study the influence of 20 different surrounding/phantom materials for alanine dosimeters was investigated. The investigations were performed in high-energy photon beams, covering the whole range from {sup 60}Co up to 25 MV-X. The aim of the study is the introduction of a perturbation correction k{sub env} for alanine dosimeters accounting for the environmental material. Methods: The influence of different surrounding materials on the response of alanine dosimeters was investigated with Monte Carlo simulations using the EGSnrc code. The photon source was adapted with BEAMnrc to a {sup 60}Co unit and an Elekta (E{sub nom}=6, 10, 25 MV-X) linear accelerator. Different tissue-equivalent materials ranging from cortical bone to lung were investigated. In addition to available phantom materials, some material compositions were taken and scaled to different electron densities. The depth of the alanine detectors within the different phantom materials corresponds to 5 cm depth in water, i.e. the depth is scaled according to the electron density (n{sub e}/n{sub e,w}) of the corresponding phantom material. The dose was scored within the detector volume once for an alanine/paraffin mixture and once for a liquid water voxel. The relative response, the ratio of the absorbed dose to alanine to the absorbed dose to water, was calculated and compared to the corresponding ratio under reference conditions. Results: For each beam quality the relative response r and the correction factor for the environment kenv was calculated. k{sub env}=0.9991+0.0049 *((n{sub e}/n{sub e,w})−0.7659){sup 3} Conclusion: A perturbation correction factor k{sub env} accounting for the phantom environment has been introduced. The response of the alanine dosimeter can be considered independent of the surrounding material for relative electron densities (n{sub e}/n{sub e,w}) between 1 and 1.4. For denser materials such as bone or much less dense surroundings such as lung, a small correction would be appropriate.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

DOE OSTI2023

Machine Learning Benchmarks for the Classification of Equivalent Circuit Models from Electrochemical Impedance Spectra

Analysis of Electrochemical Impedance Spectroscopy (EIS) data for electrochemical systems often consists of defining an Equivalent Circuit Model (ECM) using expert knowledge and then optimizing the model parameters to deconvolute various resistance, capacitive, inductive, or diffusion responses. For small data sets, this procedure can be conducted manually; however, it is not feasible to manually define a proper ECM for extensive data sets with a wide range of EIS responses. Automatic identification of an ECM would substantially accelerate the analysis of large sets of EIS data. We showcase machine learning methods to classify the ECMs of 9,300 impedance spectra provided by QuantumScape for the BatteryDEV hackathon. The best-performing approach is a gradient-boosted tree model utilizing a library to automatically generate features, followed by a random forest model using the raw spectral data. A convolutional neural network using boolean images of Nyquist representations is presented as an alternative, although it achieves a lower accuracy. We publish the data and open source the associated code. The approaches described in this article can serve as benchmarks for further studies. A key remaining challenge is the identifiability of the labels, underlined by the model performances and the comparison of misclassified spectra.

25 ENERGY STORAGE↗

DOE OSTI2020

GEOPHIRES v2.0

GEOPHIRES v2.0 is a geothermal techno-economic simulation tool upgraded from GEOPHIRES v1.2. The name stands for "GEOthermal energy for Production of Heat and electricity (“IR”) Economically Simulated". GEOPHIRES combines reservoir, wellbore, and surface plant technical models with cost correlations and levelized cost models to estimate the capital and operation and maintenance costs, instantaneous and lifetime energy production, and overall levelized cost of energy of a geothermal plant. In addition to electricity generation, direct-use heat applications and combined heat and power or cogeneration can be modeled. Various upgrades have been implemented to develop GEOPHIRES v2.0, including: updating the built-in cost correlations, coupling to the external reservoir simulator TOUGH2, enhancing the built-in wellbore simulator, converting the programming language to Python, and making the code open-source. Users are encouraged to build upon the tool, e.g. by implementing their own correlations or coupling to other simulators.

Beckers, Koenraad↗

DOE OSTI2021

Wrapper for the optimization of cross-section generation in OpenMC

The "Wrapper for the optimization of cross-section generation in OpenMC" is Python-based software that runs the open-source Monte Carlo code OpenMC (https://docs.openmc.org/en/stable/ ) to generate cross-sections for any reactor geometry. The wrapper then optimizes those cross sections. The optimization aims to choose an energy group structure and a scattering representation that maximize accuracy with respect to continuous-energy results while avoiding significant computational expense. It then outputs these cross-sections in an ISOXML format readable by the Idaho National Lab code suite MOOSE (Olin William Calvin, Mark D DeHart, “Architecture for the Performance of Nuclear Fuel Depletion Calculations”, Idaho National Laboratory report, November 2019). The expected use-cases of this software include: -finding the best group structure and scattering representation for a specific reactor -testing the appropriateness of energy group structures for different reactor types -comparing energy group structures and scattering representations to each other -generating cross sections for use in deterministic codes, including ones found in the MOOSE suite The example reactor geometry included in this release is a generic reactor design, not based on any reactor in existence or in development. It was fabricated for the sole purpose of being a “testbed-geometry” upon which to develop this tool. Since the tool is designed to be generic, the nature of the test geometry is not very important, however, it is valuable to include as an example for users who are unfamiliar with developing reactor geometries for OpenMC.

Kreher, Miriam↗

DOE OSTI2024

Exascale-Enabled Models and Algorithms for Microelectronics Applications (MicroEleX) v1

The MicroEleX code package contains a variety of models and algorithms for physical modeling of microelectronic circuitry, including electrostatics, electrodynamics, superconducting physics, micromagnetics, multi-ferroic systems, and quantum transport. MicroEleX leverages the AMReX software framework to provide scalability on GPU-based supercomputing architectures. The code is open source and designed to be algorithmically flexible so developers can incorporate enhanced or customized physics.

Nonaka, Andy↗

DOE OSTI2022

Data for Responsiveness of Miscanthus and Switchgrass Yields to Stand Age and Nitrogen Fertilization: A Meta-regression Analysis

The compiled datasets include plot level observations of energy crops (miscanthus and switchgrass) from recent experimental field trials in the US including dry biomass yield, location, state, region, harvest year, growing season degree days (GDD), winter season heating degree days (HDD), growing season cumulative precipitation, annual nitrogen application rate, age of the pant when harvested, National Commodity Crop Productivity Index (NCCPI) values, and cultivar type (switchgrass) from various published and unpublished sources. The stata codes include estimation procedures for four different specifications, i.e., Model A includes deterministic effect without interaction terms; Model B includes deterministic effect with interaction terms (N2, age2, N × age, GDD2, precip2, N × NCCPI); Model C includes deterministic effect with interaction terms, study, and location random effect; Model D includes deterministic effect with interaction terms, harvest year augmented study, and location random effect.

Age↗

DOE OSTI2024

Preliminary Study of Iodine Gas Removal in Sodium Pools

Potential iodine gas release from failed fuel pins is a critical factor in the source term analysis of oxide fuel-loaded sodium fast reactors (SFRs). The accumulated iodine-containing gas mixtures inside pin plenums are expected to be ejected during pin failures and rise through sodium pool, with potential release of gaseous iodine to the cover gas region. Due to its potential radiological impacts, a proper assessment of iodine behavior is necessary for an accurate source term assessment. Throughout the bubble rise trajectory in the sodium pool, iodine gas is continuously removed or transformed at the bubble interface by diffusion, as the combining reaction between the iodine and sodium to form sodium iodide (NaI) is a chemically preferred process. As the final amount of iodine released from the facility is strongly influenced by the removal phenomenon inside the sodium pool, experiments were previously performed by PNC (Power Reactor and Nuclear Fuel Development Corporation) to provide insight into this phenomenon. To assess the accuracy of present methods for predicting iodine gas removal within sodium pools, several candidate approaches, available in source term analysis codes, have been summarized and evaluated in this study. Spherical cap bubbles and spherical bubbles are considered in accordance with the methods adopted in each approach, and different forms of correlations for major parameters have been implemented in accordance with the original adoptions. Based on the summarized results, important aspects to be considered have been derived.

Decontamination↗

DOE OSTI2016

Hot Rolling Scrap Reduction through Edge Cracking and Surface Defects Control

The design of future aircraft must address the combined demands for fuel efficiency, reduced emissions and lower operating costs. One contribution to these goals is weight savings through the development of new alloys and design techniques for airframe structures. This research contributes to the light-weighting through fabrication of monolithic components from advanced aluminum alloys by making a link between alloy processing history and in-service performance. Specifically, this research demonstrates the link between growing cracks with features of the alloy microstructure that follow from thermo-mechanical processing. This is achieved through a computer model of crack deviation. The model is validated against experimental data from production scale aluminum alloy plate, and demonstration of the effect of changes in processing history on crack growth is made. The model is cast in the open-source finite element code WARP3D, which is freely downloadable and well documented. This project provides benefit along several avenues. First, the technical contribution of the computer model offers the materials engineer a critical means of providing guidance both upstream, to process tuning to achieve optimal properties, and downstream, to enhance fault tolerance. Beyond the fuel savings and emissions reduction inherent in the light-weighting of aircraft structures, improved fault tolerance addresses demands for longer inspection intervals over baseline, and a lower life cycle cost.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2017

High-Performance First-Principles Molecular Dynamics for Predictive Theory and Modeling

This project focused on developing high-performance software tools for First-Principles Molecular Dynamics (FPMD) simulations, and applying them in investigations of materials relevant to energy conversion processes. FPMD is an atomistic simulation method that combines a quantum-mechanical description of electronic structure with the statistical description provided by molecular dynamics (MD) simulations. This reliance on fundamental principles allows FPMD simulations to provide a consistent description of structural, dynamical and electronic properties of a material. This is particularly useful in systems for which reliable empirical models are lacking. FPMD simulations are increasingly used as a predictive tool for applications such as batteries, solar energy conversion, light-emitting devices, electro-chemical energy conversion devices and other materials. During the course of the project, several new features were developed and added to the open-source Qbox FPMD code. The code was further optimized for scalable operation of large-scale, Leadership-Class DOE computers. When combined with Many-Body Perturbation Theory (MBPT) calculations, this infrastructure was used to investigate structural and electronic properties of liquid water, ice, aqueous solutions, nanoparticles and solid-liquid interfaces. Computing both ionic trajectories and electronic structure in a consistent manner enabled the simulation of several spectroscopic properties, such as Raman spectra, infrared spectra, and sum-frequency generation spectra. The accuracy of the approximations used allowed for direct comparisons of results with experimental data such as optical spectra, X-ray and neutron diffraction spectra. The software infrastructure developed in this project, as applied to various investigations of solids, liquids and interfaces, demonstrates that FPMD simulations can provide a detailed, atomic-scale picture of structural, vibrational and electronic properties of complex systems relevant to energy conversion devices.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2017

First-Principles Simulations of Functional Materials for Energy Conversion

Computational modeling has become a very effective approach in predicting properties of materials, and in designing functional materials with targeted structural, thermal, or optical properties. Many electronic structure methods have been developed, including density functional theory. Among them, DFT has been widely used in physics and materials science because it is computationally cheaper than other methods but still gives desired accuracy. It also provides a good starting point for higher levels of theory, such as many-body perturbation theory and quantum Monte Carlo. In parallel to these electronic structure method developments, a dramatic increase in computing capabilities over the last decade has enabled large-scale electronic structure calculations to address leading-edge materials science problems. In particular, with Theta at the Argonne Leadership Computing Facility (ALCF), our early science project investigated large-scale nanostructured materials for energy conversion and storage using two open-source electronic structure codes Qbox (http://qboxcode.org) and WEST (http://west-code.org). Qbox is an ab-initio molecular dynamics code based on plane wave DFT, and WEST is a post-DFT code for excited state calculations within many-body perturbation theory.

36 MATERIALS SCIENCE↗

DOE OSTI2023

Design of a Cryogenic Scintillation Neutrino Detector at the Spallation Neutron Source

We successfully verified in the following three aspects the feasibility of using a cryogenic scintillating crystal-based neutrino detector at the Spallation Neutron Source (SNS), Oak Ridge National Laboratory, for the detection of low-mass dark matter particles and non-standard neutrino interactions (NSIs), as part of the detector R&D effort of the COHERENT experiment. First, we demonstrated the possibility of using silicon photomultipliers (SiPMs) at cryogenic temperatures to replace traditional photomultiplier tubes (PMTs) as light sensors. Second, we verified that the high light yield of undoped CsI crystals measured above 13 keVee at 77 K still holds down to 5.9 keVee. Third, we successfully measured nuclear quenching factor of undoped cryogenic CsI at the Triangle Universities Nuclear Laboratory with the help from our Duke collaborators. The first achievement resulted in a publication in European Physics Journal C. The second resulted in an arXiv pre-print, which is under journal review. The last one indicates that the performance of the proposed detector may be better than what was assumed in the literature. The analysis is in the final stage and will result in another journal publication. In addition, two graduate students involved in this project graduated with master’s degrees during the project period. Both decided to continue their research as PhD students. One open-source data analysis code package was created and is publicly available on GitHub. A set of tutorials about Monte Carlo simulation of radiation interacting with detectors were created on YouTube, receiving more than 100,000 views.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2023

An Overview of UME: Unstructured Mesh Explorations [Slides]

What is UME? UME extracts an important computational kernel from a large computational physics application, which is based on an unstructured mesh representation. The memory layout, indexing, data management, and communication patterns are as close to the original application as possible. The original application is a long-lived Fortran program, with ~750K source lines of code (sloc). UME is a C++17 implementation of a zone gradient operator, with about ~3K sloc.

97 MATHEMATICS AND COMPUTING↗