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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Machine Learning script to predict groundwater ages based on auxiliary features in a publicly available dataset, based on publicly available software libraries. Code applied to data from the Groundwater Ambient Monitoring and Assessment (GAMA) program in California, including well location and construction information, chemical constituents and isotopic tracers, and land use metrics.
This package includes three parts, (1) gov.bnl.nndc.ensdf, (2) gov.nist.xray and (3) gov.nist.physics.n42, which are utilized in the development of Radiation Detector Simulator (RadSim) project. RadSim is being developed to provide the capability to: (1) simulate radiation source emissions, (2) interpolate results from radiation transport tools into a common format to prepare incident flux, and (3) model radiation detector response to rapidly produce synthetic radiation measurement templates. RadSim is targeted for open-source release, which will enable researchers and industry partners to model gamma-ray detectors response to simulated flux from the transport tool of their choice. The first tool of the package, gov.bnl.nndc.ensdf, includes functionality to parse and split publicly available decay records in ENSDF format, and pull the relevant information from ENSDF libraries. The second tool, gov.nist.xray, provides Xray information using the public NIST database. Lastly, gov.nist.physics.n42, is a tool used to convert an N42 xml file into a Java object that can be interfaced within a Java program.
Increases in sequencing capacity, combined with rapid accumulation of publications and associated data resources, have increased the complexity of maintaining associations between literature and genomic data. As the volume of literature and data have exceeded the capacity of manual curation, automated approaches to maintaining and confirming associations among these resources have become necessary. Here we present the Data Citation Explorer (DCE), which discovers literature incorporating genomic data whether or not provenance was clearly indicated. This service provides advantages over manual curation methods including consistent resource coverage, metadata enrichment, documentation of new use cases, and identification of conflicting metadata. The service reduces labor costs associated with manual review, improves the quality of genome metadata maintained by the U.S. Department of Energy Joint Genome Institute (JGI), and increases the number of known publications that incorporate its data products. The DCE facilitates an understanding of JGI impact, improves credit attribution for data generators, and can encourage data sharing by allowing scientists to see how reuse amplifies the impact of their original studies.
This Python package implements a high-level interface to access the data published by the Particle Data Group (PDG) in the Review of Particle Physics (the "Review"). The Particle Data Group is an international collaboration led by the PDG group at LBNL. The PDG summarizes the established knowledge in the field of particle physics in a single publication, the Review of Particle Physics. The Review is published and updated online (see https://pdg.lbl.gov) each year, and published in a scientific journal every other year. It is currently licensed under a CC BY-NC 4.0 license. In 2021 PDG was designated by the Office of Science as a SC PuRe Data Resource. The Review is one of the most highly cited publications in the field of particle physics. The PDG Python API is part of PDG's efforts to make all data provided in the Review available in machine-readable format. This data includes the PDG world averages (or best limits) on particle masses, widths or lifetimes, branching fractions, magnetic moments, form factors, coupling constant ratios, and searches, as well as particle quantum numbers. It also includes detailed information on how PDG arrived at its averages, such as e.g. tables of published measurements with comments and footnotes, information on the consistency of published measurements, and detailed fit information.
This library is a collection of python modules that define, train, and analyze vision-transformer (ViT) machine learning models. The code implements, with mild modifications, ViT models that have been made publicly available through publication and GitHub code. The training data for these models is hydrodynamic simulation output in the form of numpy arrays. This library contains code to train these ViT models on the hydrodynamic simulation output with a variety of hyperparameters, and to compare the results of such models. Furthermore, the library contains definitions of simple convolutional neural network (CNN) machine learning architectures which can be trained on the same hydrodynamic simulation output. These are included as a reference point to compare the ViT models to. Additionally, the library includes trained ViT and CNN models and example input data for demonstration purposes. The code is based on the PyTorch python library.
Urban heat is a growing concern, particularly in dense metropolitan areas where high temperatures increase the risk of heat-related illness and drive energy expenses for cooling. Estimating the effects of urban heat remains a challenge due to limitations in describing the built environment, computational constraints, and the need for high-resolution data. This software presents open-source, computationally efficient machine learning methods that enhance the accuracy of urban temperature estimates compared to historical reanalysis data. Models trained using this software have been applied to urban microclimates in Los Angeles and Seattle showing greater accuracy and less bias when compared to low-resolution reanalysis datasets like ERA5 and even when compared to high-resolution mesoscale numerical weather models like WRF with an urban canopy model. Initial findings highlight how machine learning can support urban heat resilience planning by enabling improved assessments of local heat islands, mitigation strategies, and their energy implications. This software is an extension of (sup3r). This software supports the following publication: Buster, Grant, et al. Tackling Extreme Urban Heat: A Machine Learning Approach to Assess the Impacts of Climate Change and the Efficacy of Climate Adaptation Strategies in Urban Microclimates. arXiv:2411.05952, arXiv, 8 Nov. 2024. arXiv.org, https://doi.org/10.48550/arXiv.2411.05952. And has related public data records available at: Buster, Grant, Cox, Jordan, Benton, Brandon, and King, Ryan. Super-Resolution for Renewable Resource Data and Urban Heat Islands (Sup3rUHI). United States: N.p., 16 Oct, 2024. Web. https://data.openei.org/submissions/6220.
This codebase houses a suite of statistical and descriptive analyses of NERC GADS data of interest to grid modelers and planners. This repository is envisioned to house a collection of statistical and descriptive summaries of NERC GADS data, particularly summaries that on their own might be insufficient to warrant publication. In addition, it is intended to disseminate results rather than to enable reproduction as GADS is non-public.
This code applies publicly available Hidden Markov Model (HMM) profiles to publicly available reference genomes of viruses. It parses the output of these searches to determine bitscore cut-offs for viral taxonomic lineages that may be represented by each HMM. Subsequently, the code will allow the user to classify novel viral sequences using these bitscore cut-offs. This code is a work-in-progress.
We plan to release the code used to perform the experiment described in our upcoming publication, entitled “Bayesian Tensor Modeling for Distribution-on-Distribution Regression.” This code a Bayesian regression model with a multi-way Dirichlet prior to tensor input distributions. All code to be released implements a new model that is intended for open-source publication.
Code developed for Studying-Polymers-on a-Chip (SPOC) project LDRD-LW-006. Public release needed for sharing code for publication.
This software contains the code and results for the paper Reducing Memory Usage of Reverse Mode AD by Compression. In particular, the code includes implementation of the necessary structures and functions for using the Singular Value Decomposition (SVD) to compress forward pass values needed for reverse mode AD as well as the necessary numerical solvers for Burgers’ Equation and numerical solution of a control problem. In addition to the code, the repository also contains the scripts, results, and logs used in the aforementioned publication. This repository is meant to enable the reproducibility of the results in the publication.
The code is written in Python and consists of the following pipeline that is implemented in Apache Airflow. This pipeline intends to understand the companies that are directly or indirectly involved with a type of critical infrastructure system at some point in that system's lifecycle. The pipeline takes a configuration file that specifies a list of initial companies to consider, a geographic region of interest, and a set of SEC form types as well as other data sources (e.g. CrunchBase) from which to extract entities and relations. There are four main components to this pipeline as currently implemented: Entity Extraction, Network Construction, Analysis, and Visualization. First, Entity Extraction, is implemented as the `topear-extract_organizations` Apache Airflow workflow. Given an initial query that specifies a geographic region of interest and a time interval, the software will extract CI facilities of interest and organizations that have a direct influence relationship to those facilities (e.g. ownership). During the course of the LDRD, we focused on Electric Vehicle charging stations and this information is available via the Department of Energy (DOE) database on fueling stations maintained by NREL. Within the context of the DOE CESER project, we have focused on Battery Energy Storage Systems (BESS). Second, the Network Extraction component will iteratively construct a social network graph given the set of organizations and people extracted in the previous step. Organizations (and eventually People if desired) are then fed as a query to the `topgear-construct_social_network` Apache Airflow workflow which given a set of initial companies and data sets (e.g. SEC EDGAR form types, OpenCorporates, Crunchbase). This Airflow workflow will iteratively query such data sources to discover relationships with new organizations and people. For example, this module can iteratively query SEC EDGAR for metadata that documents the number of each type of form for the given set of companies and their location. This forms metadata represents a catalog of data sources from SEC EDGAR for the extracted social network knowledge graph. The pipeline then downloads these forms from the website and saves them in a build directory for further processing. These documents are then parsed for entities and relations. Again, we note that in additional to SEC data sources, this step can also pull in information on organizations via API services such as CrunchBase and OpenCorporates or bulk data sources. At the end of this step, the resultant social network, the Critical Infrastructure network, and the edges that encode relationships between organizations and CI facilities, form the Adversarial Socio-Technical Network (ASTN) that informs the analysis. Third, the Analysis component processes these generated ASTN. Previously, that has included the ability to compare prevalence of different vendors for a given infrastructure component type across different regions as well as identify common public and private investors across those vendors. This was demonstrated for EV Charging Stations across several different metropolitan areas within an IEEE PES GridEdge publication. More recently, we have looked at ways to identify infrastructure owners and operators of BESS with the most nameplate capacity across different states as well as other indictors of risk resulting from changes in ownership over time. Finally, the Visualization component consists of an HTML/CSS/JS framework by which users can interact geospatial, operational, and organizational relationships across a given portfolio of Critical Infrastructure facilities. The objective is to provide a library of UI/UX modules that can be repurposed for stakeholder-specific dashboards. All of the modules are related via a common event model that enables UI actions in one view to percolate across the other views.
CyOTE Insights leverages React, Vite, Typescript, Tailwind, and Daisy UI for the Graphical User Interface. It was designed in a particular style with a dark mode and a light mode. All code is broken down into components and reusable wrapper components for efficiency. All data is stored in Deep Lynx as a central data repository using an ontology based schema. The application serves as a main endpoint for the data in the COREII and CyOTE programs. The main purpose of the application is to display historical attack data in the Operational Technology space. At the time of this writing, it supports 27 historical attack reports compiled from OSINT sources. All of the data is publicly available, but what this application offers is the ability to see many years worth of publications in a detailed dashboard. It will also support future reports that are written using the other applications in the COREII program.
The output of a molecular dynamics simulation is a data file containing properties of the motion of the simulated particles as a function of time (e.g., positions, velocities). From this output, scientists can extract various properties which give insight into the physics of the system; for example, the radial distribution function can be computed from the particle positions, which gives insight into how close the system is to melting or freezing. Many publicly available codes to perform molecular dynamics simulations exist and have been well adopted by the scientific community (e.g., LAMMPS, VASP). However, it remains standard practice for scientists to write their own post-processing scripts to extract various properties of interest from the molecular dynamics simulation data. Since in many cases scientists are interested in the same set of “textbook” properties, there is a large duplication of effort in writing these post-processing scripts. Our proposed code, FP-Tools, is a C++ toolkit designed to help scientists extract and analyze quantities of interest from the output of a molecular dynamics simulation, eliminating the need for them to write these codes themselves and thus reducing this duplication of effort. The quantities which are computed by our code are well documented in the literature (either in publications or textbooks), and the algorithms we implement to compute these properties are also well known in the field. We are not introducing new science or methods here; rather, our primary goal is to provide a useful tool to the community in the form of a well-documented, easy to use package.
In this article, we provide an overview of the experimental design, execution, education and public outreach, data collection, and initial scientific results from the Remote Sensing of Electrification, Lightning, and Mesoscale/Microscale Processes with Adaptive Ground Observations (RELAMPAGO) field campaign. RELAMPAGO was a major field campaign conducted in the Córdoba and Mendoza provinces in Argentina and western Rio Grande do Sul State in Brazil in 2018–19 that involved more than 200 scientists and students from the United States, Argentina, and Brazil. This campaign was motivated by the physical processes and societal impacts of deep convection that frequently initiates in this region, often along the complex terrain of the Sierras de Córdoba and Andes, and often grows rapidly upscale into dangerous storms that impact society. Observed storms during the experiment produced copious hail, intense flash flooding, extreme lightning flash rates, and other unusual lightning phenomena, but few tornadoes. The five distinct scientific foci of RELAMPAGO—convection initiation, severe weather, upscale growth, hydrometeorology, and lightning and electrification—are described, as are the deployment strategies to observe physical processes relevant to these foci. The campaign’s international cooperation, forecasting efforts, and mission planning strategies enabled a successful data collection effort. In addition, the legacy of RELAMPAGO in South America, including extensive multinational education, public outreach, and social media data gathering associated with the campaign, is summarized.
Here, this case study presents findings from an analysis of the emergency preparation and response for Hurricane Irma, the most recent hurricane impacting the Tampa Bay region. The Tampa Bay region, in particular, is considered one of the most vulnerable areas in the United States to hurricanes and severe tropical weather. A particular vulnerability stems from how all petroleum fuel comes to the area by marine transport through Port Tampa Bay, which can be (and has been in the past) impacted by hurricanes and tropical storms. The case study discussed in this paper covers previous fuel challenges, vulnerabilities, and lessons learned by key Tampa Bay public agency fleets during the past 10 years (mainly as a result of the most recent 2017 Hurricane Irma) to explore ways to improve the area’s resilience to natural disasters. Some of the strategies for fuel-supply resiliency include maintaining emergency fuel supply, prioritizing fuel use, strategically placing the assets around the region to help with recovery, investing in backup generators (including generators powered by alternative fuels), planning for redundancies in fuel supply networks, developing more efficient communication procedures between public fleets, hurricane preparedness-planning, and upgrading street drainage systems to reduce the threat of local flooding.
Safety issues associated with transporting crude oil by rail have been a concern since the boom of the U.S. domestic shale oil production in 2012. During the last decade, over 300 crude-oil-by-rail incidents have occurred in the United States. Some of them have caused adverse consequences including fire and hazardous materials leakage. However, only limited information on crude-on-rail routes and their associated risks is available to the public. To this end, this study proposed an unconventional way to reconstruct crude-on-rail routes using geotagged photos harvested from the Flickr website. The proposed method linked the geotagged photos of crude oil trains posted online with national railway networks to identify potential railway segments that those crude oil trains were traveling on. Here, a shortest path-based method was applied to infer the complete crude-on-rail routes, by utilizing the confirmed railway segments as well as their directional information. Validation of the inferred routes was performed using a public map and official crude oil incident data. The results suggested that the inferred routes based on geotagged photos had high coverage, with approximately 96% of the documented crude oil incidents aligned with the reconstructed crude-on-rail network. The inferred crude oil train routes were found to pass through several metropolitan areas of high population density, who were exposed to potential risk. These findings could improve situational awareness for policy makers and transportation planners. In addition, with the inferred routes, this study has established a good foundation for future crude oil train risk-analyses along the rail route.
Here, this article characterizes the performance and ridership patterns of an on-demand transit (ODT) service utilizing lightweight electric vehicles (EVs) in New Rochelle, New York. Ridership sociodemographics, travel patterns (both temporal and spatiotemporal), and energy use from the service were explored using travel and survey data from September 2019 through December 2023. The ODT service was found to be used more by women (nearly 60%) and younger demographics (>65% under the age of 42), with peak use in the middle of the day and a grocery store as a top origin and destination. The service was utilized primarily for short trips (86% under 2 mi), with approximately one-third of riders using the ODT service to connect to a train or bus. The costs associated with fueling/charging were compared for different types of fleet vehicles, and the small, right-sized EVs were found to have annual charging costs that were roughly half of the refueling costs for conventional hybrid vans, and 24 times lower than a fleet of diesel buses. Evaluating the vehicle fleet and mapping current socio-spatial travel demand can inform system performance, guide service area development, and support future planning such as expansion to nearby communities and transit hubs. The findings in this case study suggest that on-demand electric transit may be a significant and growing space for advancing highly valued public mobility services. Public transport interventions that consider right-sized, electric, on-demand vehicles can help improve mobility access and reduce energy use and refueling costs.