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At least 883 records · Page 49
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Monte Carlo method for constructing confidence intervals with unconstrained and constrained nuisance parameters in the NOvA experiment

Measuring observables to constrain models using maximum-likelihood estimation is fundamental to many physics experiments. Wilks' theorem provides a simple way to construct confidence intervals on model parameters, but it only applies under certain conditions. These conditions, such as nested hypotheses and unbounded parameters, are often violated in neutrino oscillation measurements and other experimental scenarios. Monte Carlo methods can address these issues, albeit at increased computational cost. In the presence of nuisance parameters, however, the best way to implement a Monte Carlo method is ambiguous. Furthermore, this paper documents the method selected by the NOvA experiment, the profile construction. It presents the toy studies that informed the choice of method, details of its implementation, and tests performed to validate it. It also includes some practical considerations which may be of use to others choosing to use the profile construction.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

DUNE Photon Detection System

The Deep Underground Neutrino Experiment (DUNE) aims to provide a broad physics program primarily addressed to probing CP violation in the neutrino sector and identifying the neutrino mass hierarchy. The search for proton decay, the observation of supernova neutrino bursts, and the investigation of solar neutrinos represent other additional goals of DUNE experiment, which can be enhanced by the use and the high performances of the Photon Detection System (PDS). Using the technology based on liquid argon Time Projection Chamber (LArTPC), the experiment plans to observe neutrino interactions inside detectors located 1300 km away from the Long Baseline Neutrino Facility (LBNF) at Fermi National Accelerator Laboratory (FNAL), where the neutrinos are produced. The experiment consists of two main parts, respectively the far and near detectors. The far site will comprise four detector modules. The first module is constituted by a vertical drift single-phase LArTPC, while the second module provides a horizontal drift single-phase LArTPC. The configurations of the other modules are still under definition. Neutrino detection in LArTPCs is achieved by identifying the charge and light generated from its interactions with liquid argon. The wire planes of the instrumented anode and the PDS detect these signals, respectively. The PDS in the first two modules, detailed in the present document, uses a modified version of the so-called ARAPUCA technology, named X-ARAPUCA. This system consisting of a highly reflecting box with an entrance window made by dichroic filters and wavelength shifters, creates a trap to detect the VUV (128 nm) scintillation photons. The X-ARAPUCA of the first module is called Supercell, and it has dimensions of 488×100 mm 2 , while Megacell is the second module version, with an active area of 60×60 cm 2 . This latter configuration also represents a significant technological advancement. Since half of the modules are placed on the cathode at high voltage, they are powered and read out using innovative power-over-fiber (PoF) and signal-over-fiber (SoF) technologies. Meanwhile, the other half are installed in a membrane behind the field cage, with a total transparency of around 70%.

Neutrino detectors↗
DOE OSTI2022

Benchmarking embedded chain breaking in quantum annealing*

Quantum annealing solves combinatorial optimization problems by finding the energetic ground states of an embedded Hamiltonian. However, quantum annealing dynamics under the embedded Hamiltonian may violate the principles of adiabatic evolution and generate excitations that correspond to errors in the computed solution. Here we empirically benchmark the probability of chain breaks and identify sweet spots for solving a suite of embedded Hamiltonians. We further correlate the physical location of chain breaks in the quantum annealing hardware with the underlying embedding technique and use these localized rates in a tailored post-processing strategies. Our results demonstrate how to use characterization of the quantum annealing hardware to tune the embedded Hamiltonian and remove computational errors.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2022

Robust and scalable uncertainty estimation with conformal prediction for machine-learned interatomic potentials

Abstract Uncertainty quantification (UQ) is important to machine learning (ML) force fields to assess the level of confidence during prediction, as ML models are not inherently physical and can therefore yield catastrophically incorrect predictions. Established a-posteriori UQ methods, including ensemble methods, the dropout method, the delta method, and various heuristic distance metrics, have limitations such as being computationally challenging for large models due to model re-training. In addition, the uncertainty estimates are often not rigorously calibrated. In this work, we propose combining the distribution-free UQ method, known as conformal prediction (CP), with the distances in the neural network’s latent space to estimate the uncertainty of energies predicted by neural network force fields. We evaluate this method (CP+latent) along with other UQ methods on two essential aspects, calibration, and sharpness, and find this method to be both calibrated and sharp under the assumption of independent and identically-distributed (i.i.d.) data. We show that the method is relatively insensitive to hyperparameters selected, and test the limitations of the method when the i.i.d. assumption is violated. Finally, we demonstrate that this method can be readily applied to trained neural network force fields with traditional and graph neural network architectures to obtain estimates of uncertainty with low computational costs on a training dataset of 1 million images to showcase its scalability and portability. Incorporating the CP method with latent distances offers a calibrated, sharp and efficient strategy to estimate the uncertainty of neural network force fields. In addition, the CP approach can also function as a promising strategy for calibrating uncertainty estimated by other approaches.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2024

GWAS supported by computer vision identifies large numbers of candidate regulators of in planta regeneration in Populus trichocarpa

Plant regeneration is an important dimension of plant propagation and a key step in the production of transgenic plants. However, regeneration capacity varies widely among genotypes and species, the molecular basis of which is largely unknown. Association mapping methods such as genome-wide association studies (GWAS) have long demonstrated abilities to help uncover the genetic basis of trait variation in plants; however, the performance of these methods depends on the accuracy and scale of phenotyping. To enable a large-scale GWAS of in planta callus and shoot regeneration in the model tree Populus, we developed a phenomics workflow involving semantic segmentation to quantify regenerating plant tissues over time. We found that the resulting statistics were of highly non-normal distributions, and thus employed transformations or permutations to avoid violating assumptions of linear models used in GWAS. We report over 200 statistically supported quantitative trait loci (QTLs), with genes encompassing or near to top QTLs including regulators of cell adhesion, stress signaling, and hormone signaling pathways, as well as other diverse functions. Our results encourage models of hormonal signaling during plant regeneration to consider keystone roles of stress-related signaling (e.g. involving jasmonates and salicylic acid), in addition to the auxin and cytokinin pathways commonly considered. The putative regulatory genes and biological processes we identified provide new insights into the biological complexity of plant regeneration, and may serve as new reagents for improving regeneration and transformation of recalcitrant genotypes and species.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Axion structure formation – II. The wrath of collapse

ABSTRACT The first paper in this series showed that quantum chromodynamic axion dark matter, as a highly correlated Bose fluid, contains extra-classical physics on cosmological scales. The source of the derived extra-classical physics is exchange–correlation interactions induced by the constraints of symmetric particle exchange and interaxion correlations from self-gravitation. The paper also showed that the impact of extra-classical physics on early structure formation is marginal, as the exchange–correlation interaction is inherently non-linear. This paper continues the study of axion structure formation into the non-linear regime, considering the case of full collapse and virialization. The N-body method is chosen to study the collapse, and its algorithms are derived for a condensed Bose fluid. Simulations of isolated gravitational collapse are performed for both Bose and cold dark matter fluids using a prototype N-body code. Unique Bose structures are found to survive even the most violent collapses. Bose post-collapse features include dynamical changes to global structures, creation of new broad sub-structures, violations of classical binding energy conditions, and new fine structures. Effective models of the novel structures are constructed and possibilities for their observation are discussed.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Magnetic fields in the formation of the first stars – II. Results

ABSTRACT Beginning with cosmological initial conditions at z = 100, we simulate the effects of magnetic fields on the formation of Population III stars and compare our results with the predictions of Paper I. We use gadget-2 to follow the evolution of the system while the field is weak. We introduce a new method for treating kinematic fields by tracking the evolution of the deformation tensor. The growth rate in this stage of the simulation is lower than expected for diffuse astrophysical plasmas, which have a very low resistivity (high magnetic Prandtl number); we attribute this to the large numerical resistivity in simulations, corresponding to a magnetic Prandtl number of order unity. When the magnetic field begins to be dynamically significant in the core of the minihalo at z = 27, we map it on to a uniform grid and follow the evolution in an adaptive mesh refinement, MHD simulation in orion2. The non-linear evolution of the field in the orion2 simulation violates flux-freezing and is consistent with the theory proposed by Xu & Lazarian. The fields approach equipartition with kinetic energy at densities ∼1010–1012 cm−3. When the same calculation is carried out in orion2 with no magnetic fields, several protostars form, ranging in mass from ∼1 to 30 M⊙; with magnetic fields, only a single ∼30 M⊙ protostar forms by the end of the simulation. Magnetic fields thus suppress the formation of low-mass Pop III stars, yielding a top-heavy Pop III initial mass function and contributing to the absence of observed Pop III stars.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l

Gene tree discordance in large genomic data sets can be caused by evolutionary processes such as incomplete lineage sorting and hybridization, as well as model violation, and errors in data processing, orthology inference, and gene tree estimation. Species tree methods that identify and accommodate all sources of conflict are not available, but a combination of multiple approaches can help tease apart alternative sources of conflict. Here, using a phylotranscriptomic analysis in combination with reference genomes, we test a hypothesis of ancient hybridization events within the plant family Amaranthaceae s.l. that was previously supported by morphological, ecological, and Sanger-based molecular data. The data set included seven genomes and 88 transcriptomes, 17 generated for this study. We examined gene-tree discordance using coalescent-based species trees and network inference, gene tree discordance analyses, site pattern tests of introgression, topology tests, synteny analyses, and simulations. We found that a combination of processes might have generated the high levels of gene tree discordance in the backbone of Amaranthaceae s.l. Furthermore, we found evidence that three consecutive short internal branches produce anomalous trees contributing to the discordance. Overall, our results suggest that Amaranthaceae s.l. might be a product of an ancient and rapid lineage diversification, and remains, and probably will remain, unresolved. This work highlights the potential problems of identifiability associated with the sources of gene tree discordance including, in particular, phylogenetic network methods. Our results also demonstrate the importance of thoroughly testing for multiple sources of conflict in phylogenomic analyses, especially in the context of ancient, rapid radiations. We provide several recommendations for exploring conflicting signals in such situations.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Recombination smooths the time-signal disrupted by latency in within-host HIV phylogenies

Within-host HIV evolution involves several features that may disrupt standard phylogenetic reconstruction. One important feature is re-activation of latently integrated provirus, which has the potential to disrupt the temporal signal, leading to variation in the branch lengths and apparent evolutionary rates in a tree. Yet, real within-host HIV phylogenies tend to show clear, ladder-like trees structured by the time of sampling. Another important feature is recombination, which violates the fundamental assumption that evolutionary history can be represented by a single bifurcating tree. Thus, recombination complicates the within-host HIV dynamic by mixing genomes and creating evolutionary loop structures that cannot be represented in bifurcating trees. In this paper, we develop a coalescent-based simulator of within-host HIV evolution that includes latency, recombination, and effective population size dynamics that allows us to study the relationship between the true, complex genealogy of within-host HIV evolution, encoded as an Ancestral Recombination Graph (ARG), and the observed phylogenetic tree. To compare our ARG results to the familiar phylogeny format, we calculate the expected bifurcating tree after decomposing the ARG into all unique site trees, their combined distance matrix, and the overall corresponding bifurcating tree. While latency and recombination separately disrupt the phylogenetic signal, remarkably, we find that recombination recovers the temporal signal of within-host HIV evolution caused by latency by mixing fragments of old, latent genomes into the contemporary population. In effect, recombination averages over extant heterogeneity, whether it stems from mixed time-signals or population bottlenecks. Further, we establish that the signals of latency and recombination can be observed in phylogenetic trees despite being an incorrect representation of the true evolutionary history. Using an Approximate Bayesian Computation method, we develop a set of statistical probes to tune our simulation model to nine longitudinally-sampled within-host HIV phylogenies. Because ARGs are exceedingly difficult to infer from real HIV data, our simulation system allows investigating effects of latency, recombination, and population size bottlenecks by matching decomposed ARGs to real data as observed in standard phylogenies.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Exploring quantum statistics for massive Dirac and Majorana neutrinos using spinor-helicity techniques

Recently, there has been interest in the applicability of quantum statistics to distinguish Dirac from Majorana neutrinos in multineutrino final states. In particular, debate has arisen over the validity of the Dirac-Majorana confusion theorem in these processes, i.e., that any distinction between the Dirac and Majorana processes goes to zero as the neutrino mass goes to zero. Here we approach this problem equipped with spinor-helicity methods generalized for massive Dirac and Majorana fermions. We explicitly calculate all helicity amplitudes, and their squares, for the decay of a light scalar particle to two neutrinos and two oppositely charged leptons. This allows us to pinpoint the crucial steps which could lead to claims of a violation of the confusion theorem. We show that, if the correct antisymmetrization of Dirac to Majorana amplitudes is used, identification of which is clear in this framework, and all relevant contributions are appropriately summed, a scalar decay into two charged leptons and two neutrinos satisfies the Dirac-Majorana confusion theorem.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2025

Time-Dependent Density Functional Theory Description of 238 U⁡(n,f), 240,242 Pu⁢(n,f), and 237 Np(n,f) Reactions

In nuclei with an odd nucleon number the nonvanishing spin number density is the source of a pseudomagnetic field, which favors the splitting of the nucleon Cooper pairs. Such a pseudomagnetic field is generated always in the dynamics of any nucleus, but its effects on Cooper pairs are significantly enhanced in the dynamic evolution of nuclei with an odd number of nucleons. We present for the first time a microscopic study of the induced fission of the odd neutron compound nuclei 239 U, 241,243 Pu, and the odd proton, odd neutron compound nucleus 238 Np, performed within the time-dependent density functional theory extended to superfluid fermion systems, without any simplifying assumptions, with controlled numerical approximations, and for a very large number of initial conditions. Because of the presence of the unpaired odd nucleon(s), the time-reversal symmetry of the fission compound nucleus is spontaneously broken, an aspect routinely neglected in the most advanced microscopic approaches of the past. The emerging fission fragment properties are quite similar to the properties of fission fragments of neighboring even-even nuclei. The time from saddle-to-scission is often significantly longer in odd-odd or odd-mass nuclei than for even-even nuclei, since systems with unpaired nucleons are easier to excite and the potential energy surfaces of these nuclei have more structure, often resembling a very complicated obstacle course, rather than a more direct evolution of the nuclear shape from the top of the outer fission barrier to the scission configuration. The Pauli blocking approximation, often invoked in the literature, expected to inhibit the fission of nuclei with unpaired nucleons, is surprisingly strongly violated during the fission dynamics.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2025

Onset of Constituent Quark Number Scaling in Heavy-Ion Collisions at RHIC

Partonic collectivity is one of the necessary signatures for the formation of quark-gluon plasma in high-energy nuclear collisions. Number of constituent quarks (NCQ) scaling has been observed for hadron elliptic flow 𝑣2 in top energy nuclear collisions at the Relativistic Heavy Ion Collider and the LHC, and this has been theoretically suggested as strong evidence for partonic collectivity. In this Letter, a systematic analysis of 𝑣 2 of 𝜋 ± , 𝐾 ± , 𝐾$^{0}_{𝑆}$, 𝑝, and Λ in Au+Au collisions at $\sqrt{s_{NN}}$ = 3.2, 3.5, 3.9, and 4.5 GeV, with the STAR experiment at the Relativistic Heavy Ion Collider, is presented. NCQ scaling is markedly violated at 3.2 GeV, consistent with a hadronic-interaction dominated equation of state. However, as the collision energy increases, a gradual evolution to NCQ scaling is observed. In conclusion, this beam-energy dependence of 𝑣 2 for all hadrons studied provides evidence for the onset of dominant partonic interactions by $\sqrt{s_{NN}}$ = 4.5 GeV.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2025

Low-Density Parity-Check Codes as Stable Phases of Quantum Matter

Phases of matter with robust ground-state degeneracy, such as the quantum toric code, are known to be capable of robust quantum information storage. Here, we address the converse question: given a quantum error-correcting code, when does it define a stable gapped quantum phase of matter, whose ground-state degeneracy is robust against perturbations in the thermodynamic limit? We prove that a low-density parity-check (LDPC) code defines such a phase, robust against all few-body perturbations, if its code distance grows at least logarithmically in the number of degrees of freedom, and it exhibits “check soundness.” Many constant-rate quantum LDPC expander codes have such properties, and define stable phases of matter with a constant zero-temperature entropy density, violating the third law of thermodynamics. Our results also show that quantum toric-code phases are robust to spatially nonlocal few-body perturbations. Similarly, phases of matter defined by classical codes are stable against symmetric perturbations. In the classical setting, we present improved locality bounds on the quasiadiabatic evolution operator between two nearby states in the same code phase.

quantum error correction↗
DOE OSTI2025

Search for a Dark Higgs Boson Produced in Association with Inelastic Dark Matter at the Belle II Experiment

Inelastic dark matter models that have two dark matter particles and a massive dark photon can reproduce the observed relic dark matter density without violating cosmological limits. The mass splitting between the two dark matter particles 𝜒 1 and 𝜒 2 , with 𝑚⁡(𝜒 2 ) >𝑚⁡(𝜒 1 ), is induced by a dark Higgs field and a corresponding dark Higgs boson ℎ′. We present a search for dark matter in events with two vertices, at least one of which must be displaced from the interaction region, and missing energy. Using a 365 fb −1 data sample collected at Belle II, which operates at the SuperKEKB 𝑒 + ⁢𝑒 − collider, we observe no evidence for a signal. We set upper limits on the product of the production cross section 𝜎⁡(𝑒 + ⁢𝑒 − → ℎ′⁡𝜒 1 ⁢𝜒 2 ), and the product of branching fractions ℬ⁡(𝜒 2 → 𝜒 1⁢ 𝑒 + ⁢𝑒 − ) ×ℬ⁡(ℎ′ → 𝑥 + ⁢𝑥 − ), where 𝑥 + ⁢𝑥 − indicates 𝜇 + ⁢𝜇 − , 𝜋 + ⁢𝜋 − , or 𝐾 + ⁢𝐾 − , as functions of ℎ′ mass and lifetime at the level of 10 −1 fb. We set model-dependent upper limits on the dark Higgs mixing angle at the level of 10 −5 and on the dark photon kinetic mixing parameter at the level of 10 −3 . This is the first search for dark Higgs bosons in association with inelastic dark matter.

dark matter↗
DOE OSTI2025

Search for New Physics in Jet Multiplicity Patterns of Multilepton Events at $\sqrt{s}$ = 13 TeV

A first search for beyond the standard model physics in jet multiplicity patterns of multilepton events is presented, using a data sample corresponding to an integrated luminosity of 138 fb −1 of 13 TeV proton-proton collisions recorded by the CMS detector at the LHC. The search uses observed jet multiplicity distributions in one-, two-, and four-lepton events to explore possible enhancements in jet production rate in three-lepton events with and without bottom quarks. The data are found to be consistent with the standard model expectation. The results are interpreted in terms of supersymmetric production of electroweak chargino-neutralino superpartners with cascade decays terminating in prompt hadronic 𝑅-parity violating interactions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

Long-lived axionlike particles from tau decays

Axionlike particles (ALPs) are well-motivated examples of light, weakly coupled particles in theories beyond the Standard Model. In this work, we study long-lived ALPs coupled exclusively to leptons in the mass range between 2⁢𝑚 𝑒 and 𝑚 𝜏 − 𝑚 𝑒 . For anarchic flavor structure the leptophilic ALP production in tau decays or from ALP-tau bremsstrahlung is enhanced thanks to derivative couplings of the ALP and can surpass production from electron and muon channels, especially for ALPs heavier than 𝑚 𝜇 . Using past data from high-energy fixed-target experiments such as CHARM and BEBC we place new constraints on the ALP decay constant 𝑓 𝑎 , reaching scales as high as 𝒪⁡(10 8 ) GeV in lepton-flavor-violating channels and 𝑓 𝑎 ∼ 𝒪⁡(10 2 ) GeV in lepton-flavor-conserving ones. We also present projections for the event-rate sensitivity of current and future detectors to ALPs produced at the Fermilab Main Injector, the CERN SPS, and in the forward direction of the LHC. We show that SHiP will be sensitive to 𝑓 𝑎 values that are over an order of magnitude above the existing constraints.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2026

Photon calibration techniques for high resolution cryogenic detectors

Monoenergetic photons from a pulsed laser diode or LED are commonly used to calibrate the detector response of high-resolution calorimetric detectors. However, when the detector’s resolution is larger than the energy of a single photon, a calibration is normally derived using Poisson statistics. In this paper, we clarify the assumptions implicit in this calibration method, before considering how a more realistic model of a detector’s performance will violate these assumptions, biasing the calibration. Lastly, we judge the individual impact of specific detector parameters on our calibration, and conclude with discussion of both the limits of our calculations and the implications for state-of-the art detectors.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

Off forward non- s -channel helicity conserving contributions to exclusive vector quarkonium production from the spin dependent BFKL Pomeron

A novel contribution to off forward, exclusive vector quarkonium production, γ(*)+p → V+p, at high energy is derived which corresponds to a t-channel exchange of a Balitsky-Fadin-Kuraev-Lipatov (BFKL) hard Pomeron, with a helicity flip of the proton. This “spin-dependent BFKL Pomeron” is required in a consistent expansion in powers of the momentum transfer t ≈−Δ$^{2}_{⊥}$ beyond first order. The spin-dependent Pomeron violates s-channel helicity conservation at O(Δ$^{2}_{⊥}$), and beyond. Expanding to leading twist only, it corresponds to generalized parton distributions E g (x,t) for vanishing skewness. We derive explicit expressions for the eikonal BFKL amplitudes, to all orders in dipole size times momentum transfer, for all helicity configurations of the particles in the initial and final states. We also provide numerical estimates of the helicity flip two gluon exchange amplitude at moderate x from a light cone quark model of the proton. The spin dependent BFKL Pomeron could, in principle, be discovered via double spin asymmetries in e+p → e+p+J/ψ with a transversely polarized proton and longitudinally polarized electron in the initial state.

Deep inelastic scattering↗