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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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A new field of numerical astrophysics is introduced which addresses the solution of large, multidimensional structural or slowly-evolving problems (rotating stars, interacting binaries, thick advective accretion disks, four dimensional spacetimes, etc.), as well as rapidly evolving systems.
The Roll-Out Solar Array (ROSA) flight experiment was launched to the International Space Station (ISS) on June 3rd, 2017. ROSA is an innovative, lightweight solar array with a flexible substrate that makes use of the stored strain energy in its composite structural members to provide deployment without the use of motors. This paper discusses the effort to model the structural dynamics of ROSA using finite element modeling. Two distinct and agnostic approaches were used by separate teams to assess the structural dynamics of the solar array prior to ground vibrational testing and flight testing. Results from each approach are compared to measured dynamics from accelerometers and photogrammetry data gathered on orbit. Advantages and disadvantages of each approach are discussed as are preliminary efforts to calibrate the models to the empirical data for the benefit of future modeling efforts on similar space structures.
Numerical simulations of 2-D triple flames under gravity force have been implemented to identify the effects of gravity on triple flame structure and propagation properties and to understand the mechanisms of instabilities resulting from both heat release and buoyancy effects. A wide range of gravity conditions, heat release, and mixing widths for a scalar mixing layer are computed for downward-propagating (in the same direction with the gravity vector) and upward-propagating (in the opposite direction of the gravity vector) triple flames. Results of numerical simulations show that gravity strongly affects the triple flame speed through its contribution to the overall flow field. A simple analytical model for the triple flame speed, which accounts for both buoyancy and heat release, is developed. Comparisons of the proposed model with the numerical results for a wide range of gravity, heat release and mixing width conditions, yield very good agreement. The analysis shows that under neutral diffusion, downward propagation reduces the triple flame speed, while upward propagation enhances it. For the former condition, a critical Froude number may be evaluated, which corresponds to a vanishing triple flame speed. Downward-propagating triple flames at relatively strong gravity effects have exhibited instabilities. These instabilities are generated without any artificial forcing of the flow. Instead disturbances are initiated by minute round-off errors in the numerical simulations, and subsequently amplified by instabilities. A linear stability analysis on mean profiles of stable triple flame configurations have been performed to identify the most amplified frequency in spatially developed flows. The eigenfunction equations obtained from the linearized disturbance equations are solved using the shooting method. The linear stability analysis yields reasonably good agreements with the observed frequencies of the unstable triple flames. The frequencies and amplitudes of disturbances increase with the magnitude of the gravity vector. Moreover, disturbances appear to be most amplified just downstream of the premixed branches. The effects of mixing width and differential diffusion are investigated and their roles on the flame stability are studied.
CO maps of the Bok globule B335 are presented and used to derive its density profile, mass distribution, and rotational velocity structure. It is found that the cloud is in nearly hydrostatic equilibrium with a density profile that varies roughly as r to the -1 in the core and r to the -3 in the envelope. The observed rotation is unimportant in the force balance at the present stage of evolution.
Metal halide perovskites (MHPs) as one of the most active materials gained tremendous attention in the past decade because of their outstanding performance in optoelectronics. Owing to their perovskite structure, ferroelectricity is anticipated in this class of materials. However, whether MHPs are ferroelectric or not remains elusive. Recently, discussion regarding ferroelasticity in MHPs has been also raised. In addition, ionic motion and structural dynamics are well known in MHPs. Additionally, the interplay of these phenomena including electric polarization, strain, ionic motion, and structural dynamics can have a significant impact on optoelectronics. Therefore, understanding the mechanism behind these phenomena and their interactions is critical in addressing the controversy about ferroicity of MHPs and developing functional devices. Here, the current findings about MHP's ferroicity are summarized and evaluated and a perspective for the future is provided. It is suggested that ionic motion and associated phenomena, coupled with ferroic behavior, are the main drivers behind MHPs functionality. The challenges are also discussed in probing MHPs’ ferroicity and what new measurement modalities are needed to fully understand and characterize MHP behavior. Finally, it is discussed how ferroic and strain can affect the optoelectronic performance of MHPs and how they can be used for engineering of higher performance devices.
High and low intensity dynamic environments experienced by a spacecraft during launch and on-orbit operations, respectively, induce structural loads and motions, which are difficult to reliably predict. Structural dynamics in low- and mid-frequency bands are sensitive to component interface uncertainty and non-linearity as evidenced in laboratory testing and flight operations. Analytical tools for prediction of linear system response are not necessarily adequate for reliable prediction of mid-frequency band dynamics and analysis of measured laboratory and flight data. A new MATLAB toolbox, designed to address the key challenges of mid-frequency band dynamics, is introduced in this paper. Finite-element models of major subassemblies are defined following rational frequency-wavelength guidelines. For computational efficiency, these subassemblies are described as linear, component mode models. The complete structural system model is composed of component mode subassemblies and linear or non-linear joint descriptions. Computation and display of structural dynamic responses are accomplished employing well-established, stable numerical methods, modern signal processing procedures and descriptive graphical tools. Parametric sensitivity and Monte-Carlo based system identification tools are used to reconcile models with experimental data and investigate the effects of uncertainties. Models and dynamic responses are exported for employment in applications, such as detailed structural integrity and mechanical-optical-control performance analyses.
Bacterial microcompartments (BMCs) are protein-bound organelles found in some bacteria that encapsulate enzymes for enhanced catalytic activity. These compartments spatially sequester enzymes within semipermeable shell proteins, analogous to many membrane-bound organelles. The shell proteins assemble into multimeric tiles; hexamers, trimers, and pentamers, and these tiles self-assemble into larger assemblies with icosahedral symmetry. While icosahedral shells are the predominant form in vivo , the tiles can also form nanoscale cylinders or sheets. The individual multimeric tiles feature central pores that are key to regulating transport across the protein shell. Our primary interest is to quantify pore shape changes in response to alternative component morphologies at the nanoscale. We used molecular modeling tools to develop atomically detailed models for both planar sheets of tiles and curved structures representative of the complete shells found in vivo . Subsequently, these models were animated using classical molecular dynamics simulations. From the resulting trajectories, we analyzed the overall structural stability, water accessibility to individual residues, water residence time, and pore geometry for the hexameric and trimeric protein tiles from the Haliangium ochraceu m model BMC shell. These exhaustive analyses suggest no substantial variation in pore structure or solvent accessibility between the flat and curved shell geometries. We additionally compare our analysis to hydroxyl radical footprinting data to serve as a check against our simulation results, highlighting specific residues where water molecules are bound for a long time. Although with little variation in morphology or water interaction, we propose that the planar and capsular morphology can be used interchangeably when studying permeability through BMC pores.
Membrane-bound O-acyltransferases (MBOATs) are membrane-embedded enzymes that catalyze acyl chain transfer to a diverse group of substrates, including lipids, small molecules, and proteins. MBOATs share a conserved structural core, despite wide-ranging functional specificity across both prokaryotes and eukaryotes. The structural basis of catalytic specificity, regulation and interactions with the surrounding environment remain uncertain. Here, we combine comparative molecular dynamics (MD) simulations with bioinformatics to assess molecular and interactional divergence across the family. In simulations, MBOATs differentially distort the bilayer depending on their substrate type. Additionally, we identify lipid binding sites surrounding reactant gates in the surrounding membrane. Complementary bioinformatic analyses reveal a conserved role for re-entrant loop-2 in MBOAT fold stabilization and a key hydrogen bond bridging DGAT1 dimerization. Finally, we predict differences in MBOAT solvation and water gating properties. These data are pertinent to the design of MBOAT-specific inhibitors that encompass dynamic information within cellular mimetic environments.
This paper describes the dynamic stability evaluation of a constrained-motion dynamometer (CMD) with passive damping. The CMD’s flexure-based design offers an alternative to traditional piezoelectric cutting force dynamometers, which can exhibit adverse effects of the complex structural dynamics on the measurement accuracy. In contrast, the CMD system’s structural dynamics are nominally single degree of freedom and are conveniently altered by material selection, flexure element geometry, and element arrangement. In this research, a passive damping approach is applied to increase the viscous damping ratio and, subsequently, the stability limit. Cutting tests were completed and the in situ CMD displacement and velocity signals were sampled at the spindle rotating frequency. The periodic sampling approach was used to determine if the milling response was synchronous with the spindle rotation (stable) or not (chatter) by constructing Poincaré maps for both experiment and prediction (time-domain simulation). It was found that the viscous damping coefficient was increased by 130% and the critical stability limit was increased from 4.3 mm (no damping) to 15.4 mm (with damping).
Histidinol-phosphate aminotransferase is the sixth protein (hence HISN6) in the histidine biosynthetic pathway in plants. HISN6 is a pyridoxal 5'-phosphate (PLP)-dependent enzyme that catalyzes the reversible conversion of imidazole acetol phosphate into L-histidinol phosphate (HOLP). Here, we show that plant HISN6 enzymes are closely related to the orthologs from Chloroflexota. The studied example, HISN6 from Medicago truncatula (MtHISN6), exhibits a surprisingly high affinity for HOLP, which is much higher than reported for bacterial homologs. Moreover, unlike the latter, MtHISN6 does not transaminate phenylalanine. High-resolution crystal structures of MtHISN6 in the open and closed states, as well as the complex with HOLP and the apo structure without PLP, bring new insights into the enzyme dynamics, pointing at a particular role of a string-like fragment that oscillates near the active site and participates in the HOLP binding. When MtHISN6 is compared to bacterial orthologs with known structures, significant differences arise in or near the string region. The high affinity of MtHISN6 appears linked to the particularly tight active site cavity. Finally, a virtual screening against a library of over 1.3 mln compounds revealed three sites in the MtHISN6 structure with the potential to bind small molecules. Such compounds could be developed into herbicides inhibiting plant HISN6 enzymes absent in animals, which makes them a potential target for weed control agents.
A hallmark of retrovirus replication is the translation of two different polyproteins from one RNA through programmed –1 frameshifting. This is a mechanism in which the actively translating ribosome is induced to slip in the 5′ direction at a defined codon and then continues translating in the new reading frame. Programmed frameshifting controls the stoichiometry of viral proteins and is therefore under stringent evolutionary selection. Forty years ago, the first frameshifting stimulatory element was discovered in the Rous sarcoma virus. The ~120 nt RNA segment was predicted to contain a pseudoknot, but its 3D structure has remained elusive. Now, we have determined cryoEM and X-ray crystallographic structures of this classic retroviral element, finding that it adopts a butterfly-like double-pseudoknot fold. One “wing” contains a dynamic pyrimidine-rich helix, observed crystallographically in two conformations and in a third conformation via cryoEM. The other wing encompasses the predicted pseudoknot, which interacts with a second unexpected pseudoknot through a toggle residue, A2546. This key purine switches conformations between structural states and tunes the stability of interacting residues in the two wings. We find that its mutation can modulate frameshifting by as much as 50-fold, likely by altering the relative abundance of different structural states in the conformational ensemble of the RNA. Taken together, our structure–function analyses reveal how a dynamic double pseudoknot junction stimulates frameshifting by taking advantage of conformational heterogeneity, supporting a multistate model in which high Shannon entropy enhances frameshifting efficiency.
High-fidelity replication of the large RNA genome of coronaviruses (CoVs) is mediated by a 3'-to-5' exoribonuclease (ExoN) in nonstructural protein 14 (nsp14), which excises nucleotides including antiviral drugs misincorporated by the low-fidelity viral RNA-dependent RNA polymerase (RdRp) and has also been implicated in viral RNA recombination and resistance to innate immunity. Here, we determined a 1.6-Å resolution crystal structure of severe acute respiratory syndrome CoV 2 (SARS-CoV-2) ExoN in complex with its essential cofactor, nsp10. The structure shows a highly basic and concave surface flanking the active site, comprising several Lys residues of nsp14 and the N-terminal amino group of nsp10. Modeling suggests that this basic patch binds to the template strand of double-stranded RNA substrates to position the 3' end of the nascent strand in the ExoN active site, which is corroborated by mutational and computational analyses. We also show that the ExoN activity can rescue a stalled RNA primer poisoned with sofosbuvir and allow RdRp to continue its extension in the presence of the chain-terminating drug, biochemically recapitulating proofreading in SARS-CoV-2 replication. Molecular dynamics simulations further show remarkable flexibility of multidomain nsp14 and suggest that nsp10 stabilizes ExoN for substrate RNA binding to support its exonuclease activity. Our high-resolution structure of the SARS-CoV-2 ExoN–nsp10 complex serves as a platform for future development of anticoronaviral drugs or strategies to attenuate the viral virulence.
Space Station Freedom will be a platform for microgravity research. For superior microgravity science, the experiment locations must experience very little acceleration in the quasi-steady, structural dynamic, and vibroacoustic frequency ranges. This paper presents the methods that were developed for evaluation of the microgravity environment in the structural dynamic range. An integrated finite element model of the space station was used to conduct analysis for the on-orbit microgravity environment. Methods were developed to evaluate sinusoidal, random, and transient disturbances. Sources of disturbances aboard the Space Station were quantified and forcing functions were assembled. The resulting acceleration levels at the experiment locations due to these disturbances were computed and assessed against the microgravity acceleration requirement curve.
A review of 1980s to early 2010s research supporting and documenting successful missions for on-orbit assembly of large space structures was conducted to bring together flexible space structure dynamics challenges and progress toward solutions. Research in this period focused on issues ranging from ground validation via unique test beds to in-space modal characterization and model adjustment. The phased assembly of the International Space Station (ISS), along with its evolving structural loads and dynamics, provides the central example, with ground and on-orbit tests of other systems providing contributing and contrasting examples of potential value for researchers facing today’s challenges.
The intensity of dynamics in a flexible structure is characterized by its Hankel singular values. Low level dynamics may be caused by generic properties of a structure or by its actuator and sensor configurations. In the latter case, it is shown that the dynamics can significantly be amplified by small perturbations of actuator and/or sensor configurations. In the presented examples, the variations of sensor configuration of 0.05 or less caused an increase of Hankel singular values of order 1000. This approach is useful for model reduction and model order determination in the presence of noise.
Large spacecraft such as Space Station Freedom employ large trusses in their construction. The structural dynamics of such trusses often exhibit nonlinear behavior and little damping which can impact significantly the performance of control systems. The Mini-MAST truss was constructed to research such structural dynamics and control systems. The Mini-MAST truss is an object of study for the guest investigator program as part of NASA's controls-structures interaction program. The Mini-MAST truss is deployable and about 65 ft long. Although the bending characteristics of the Mini-MAST truss are essentially linear, the angular deflection under torsional loading has exhibited significant hysteresis and nonlinear stiffness. It is the purpose to develop nonlinear and distributed parameter models of the truss and to compare the model dynamics with actual measurements. Distributed parameter models have the advantage of requiring fewer model parameters. A tangent function is used to describe the nonlinear stiffness in torsion, partly because of the convenience of its easily expressed inverse. Hysteretic slip elements are introduced and extended to a continuum to account for the observed hysteresis in torsion. The contribution of slipping to the structural damping is analyzed and found to be strongly dependent on the applied loads. Because of the many factors which affect the damping and stiffness in a truss, it is risky to assume linearity.
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T-box riboswitches are unique riboregulators where gene regulation is mediated through interactions between two highly structured RNAs. Despite extensive structural insights, how RNA-RNA interactions drive the folding and structural transitions of T-box to achieve functional conformations remains unclear. Here, by combining SAXS, single-molecule FRET and computational modeling, we elaborate the folding energy landscape of a translational T-box aptamer consisting of stems I, II and IIA/B, which Mg 2+ -induced global folding and tRNA binding are cooperatively coupled. smFRET measurements reveal that high Mg 2+ stabilizes IIA/B and its stacking on II, which drives the pre-docking of I and II into a competent conformation, subsequent tRNA binding promotes docking of I and II to form a high-affinity tRNA binding groove, of which the essentiality of IIA/B and S-turn in II is substantiated with mutational analysis. We highlight a delicate balance among Mg 2+ , the intra- and intermolecular RNA-RNA interactions in modulating RNA folding and function.