Conformational control via sequence for a heteropeptoid in water: coupled NMR and Rosetta modelling
Structured water-soluble and hetero-oligomeric peptoids: the importance of peptoid-specific backbone restrictions.
SEARCH · Engineering Papers
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.
Structured water-soluble and hetero-oligomeric peptoids: the importance of peptoid-specific backbone restrictions.
Using the 2017 Hurricane Harvey flood event as a test case, this study set up a series of sensitivity analyses to highlight three challenges associated with large-scale flood inundation modeling, including (a) model parameterization, (b) errors in digital elevation models, and (c) effects of reservoir retention. Driven by radar-based hourly rainfall data, a series of hydrologic-hydraulic models including the VIC hydrologic model, RAPID routing model, and Flood2D-GPU hydrodynamic model are set up over Harris County, Texas, to simulate flood inundation and hazards. The results demonstrate the importance of hydrologic parameters in improving flood modeling. For a large flood event such as Hurricane Harvey, the effect of the initial water depths is insignificant. The Manning's n values may increase the peak water depth by ~1%, the flood extents by 65km 2 , and the high danger zone by ~6%. On the contrary, the bathymetry correction factors may reduce the flood extent by ~1.4% and the high-danger zone by ~4%. Reducing the reservoir storage capacity to 1% may increase the flood extent by ~4% and the high-danger zone by ~17%. This study may provide supporting information to guide and prioritize the development of future high-performance computing hydrodynamic large-scale flood simulations.
Abstract The Atlantic meridional overturning circulation (AMOC) is projected to slow down in climate models due to greenhouse gas emissions. However, the physical mechanisms determining the rate of the projected AMOC slowdown remain unclear. Accordingly, this study isolates the roles of oceanic advection and surface flux feedbacks that might accelerate or decelerate the AMOC’s weakening using carbon dioxide (CO 2 ) quadrupling simulations in the CESM1.2 model. Surface flux feedbacks are isolated in partially coupled experiments in which either all surface flux components or the momentum flux responses to AMOC’s weakening that might provide feedback are suppressed, while a tracer decomposition of ocean density anomalies isolates the advection feedbacks. Comparing the ocean density components in the experiments shows that the AMOC’s response is initially determined by CO 2 -induced anomalous surface heat fluxes, and afterward, feedbacks determine its response. In the fully coupled case, surface heat flux feedback strongly promotes AMOC slowdown and causes its near shutdown, while a weaker but active AMOC is maintained when the surface flux feedback is inhibited in the partially coupled case. The positive surface heat flux feedback works by canceling out the negative oceanic heat advection feedback on deep-water formation in the subpolar North Atlantic (SPNA). With the heat advection feedback thus reduced, the positive salinity advection feedback becomes the dominant contributor to SPNA density changes and deep-water formation. In the partially coupled case, negative ocean heat advection feedback and the CO 2 -induced subtropical Atlantic saline anomalies imported into the SPNA play a stabilizing role. The results highlight the importance of SPNA salinity gradients and gyre circulation strength in determining the AMOC’s response rate or recovery.
Our project has advanced the science of plant-soil-microbial dynamics across these areas: i) nutrient cycling and plant uptake; ii) root exudation and priming; and, iii) mycorrhizal dynamics. Our project has accomplished 5 main developments: 1) Incorporation of phosphorus cycling into the Fixation & Uptake of Nutrients (FUN 3.0) model. 2) Coupling of FUN 3.0 into the E3SM Land Model (ELM). 3) Data collection across a large mycorrhizal gradient in the US, as well data in the tropics, to parameterize, test, and validate the model. 4)Scaling up mycorrhizal association measurements across landscapes using airborne hyperspectral remote sensing data. 5) Evaluation of global carbon and nutrient cycle impacts in the Community Land Model (CLM5.0) from a suite of new global mycorrhizal association maps. Over 25 publications resulted from this project, with more continuing past the project funded lifetime. Paper highlights from most of these publications have already been submitted to the DOE paper submission online system. These publications include journals such as Science and PNAS, as well as top disciplinary journals from the Nature journals, Global Change Biology, New Phytologist, and Ecology Letters, for example. Our project also contributed to improving the process representation, capabilities, and accuracy of the DOE ELM. Overall, this project significantly advanced the science of belowground plant-soil-microbial interactions as well as technical capabilities from remote sensing to modeling.
Sandia National Laboratories has developed a capability to estimate parameters of epidemiological models from case reporting data to support responses to the COVID-19 pandemic. A differentiating feature of this work is the ability to simultaneously estimate county-specific disease transmission parameters in a nation-wide model that considers mobility between counties. The approach is focused on estimating parameters in a stochastic SEIR model that considers mobility between model patches (i.e., counties) as well as additional infectious compartments. The inference engine developed by Sandia includes (1) reconstruction and (2) transmission parameter inference. Reconstruction involves estimating current population counts within each of the compartments in a modified SEIR model from reported case data. Reconstruction produces input for the inference formulations, and it provides initial conditions that can be used in other modeling and planning efforts. Inference involves the solution of a large-scale optimization problem to estimate the time profiles for the transmission parameters in each county. These provide quantification of changes in the transmission parameter over time (e.g., due to impact of intervention strategies). This capability has been implemented in a Python-based software package, epi_inference, that makes extensive use of Pyomo [5] and IPOPT [10] to formulate and solve the inference formulations.
Abstract not provided.
Abstract not provided.
Abstract not provided.
Abstract not provided.
Abstract not provided.
Explore the source record for details and available documents.
Explore the source record for details and available documents.
Explore the source record for details and available documents.
Explore the source record for details and available documents.
Explore the source record for details and available documents.
Explore the source record for details and available documents.
Explore the source record for details and available documents.
Abstract not provided.