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DOE OSTI2022

Picoliter droplet sample processing and deposition for mass spectrometry

Disclosed herein include systems, devices, and methods for droplet deposition for mass spectrometry. In some embodiments, a microfluidic device comprising wells is reversibly sealed to a mass spectrometry surface and used to deposit contents of droplets (e.g., enzymes and substrates), or products thereof, onto the mass spectrometry surface. The contents of droplets can be analyzed by laser desorption/ionization to, for example, identify a substrate of an enzyme or an enzyme capable of catalyzing a substrate to a product.

Ha, Noel↗

DOE OSTI2024

Measuring Economy-Wide Circularity of the United States: An Input-Output Model in Mass Units

The ideal of creating closed material cycles by transforming the way we make, use and repurpose goods has become known as the circular economy. Besides its visionary appeal, material efficiency strategies central to circular economy can allow us to meet decarbonization goals that are otherwise out of reach. Production of basic materials such as cement, iron and steel and petrochemicals is one of the largest drivers of greenhouse gas emissions. Measuring circularity, and understanding its relationship with other sustainability metrics, however, is still difficult due to lack of data in mass units covering the entire economic system. Input-output (I-O) tables were originally created as a means of tracking the monetary flows that represent exchanges of goods and services within an economy, but have found additional uses in life cycle assessment and material flow accounts. In the traditional approach of environmentally extended I-O tables, emissions and energy data augment monetary flows. This approach can lead to price effects that distort physical quantities. Also, circular economy strategies and their goals relate to mass, not monetary flows. Therefore, it is best to simulate them using physical quantities. With these issues in mind, we have developed I-O tables in mass units to measure the flow of goods in the U.S. economy. This allows us to better measure how circular the economy really is, and how policy changes to affect this circularity may also affect decarbonization goals. Improving knowledge of these linkages could allow manufacturers to make changes in their production to achieve their sustainability and decarbonization targets. Our tool also provides a standard approach and public repository for data in physical units, making such data more available, useful, and meaningful. Following an established set of material flow metrics used by the European Union, we have used our tool to calculate material footprints over time differentiated by oil and gas versus other extractive industries. This approach also shows the relative trade balances of the U.S. in materials. We have developed a case study for the iron and steel sector, showing how different decarbonization scenarios affect not only economy-wide greenhouse gas emissions, but also total material use.

circular economy↗

DOE OSTI2023

Validation of Hadron Mass Correction Schemes in Deep Inelastic Scattering at Low Energy Transfer

One method of describing the quark-gluon of the structure proton relies on factorizing its cross-section into a process-dependent short distance element and an independent long distance element that quantifies the quark and gluon momentum distributions within the proton. This research focuses on validating the kinematic range at which factorization theorems still accurately describe the cross-section, in particular for events that simulate scattering on large momentum quarks, that are sensitive to the details of the color mechanism. In this regime, effects which otherwise scale away at large energies, become non-negligible at low energies. The goal of this research is to assess the viability of an extended version of ?collinear factorization? recently proposed by J. Guerrero and A. Accardi, which includes kinematic corrections at quark level, known as ?hadron mass corrections?, to account for the masses of the quarks and the target. To accomplish this, deep inelastic scattering events are simulated using a realistic model of deep inelastic scattering, in which one may analytically calculate both the structure functions and the quark distribution functions. These simulated experiments are then used to test the viability of the proposed factorization theorem by fitting the quark distributions and comparing these to the analytically calculable ones. It is found that the viability of hadron mass corrections in low energy scattering experiments, such as those at Jefferson Lab, extends beyond the kinematic range suggested by analytic calculations alone, provided that residual higher twist corrections are simultaneously fitted to the data.

Krause, Andrew↗

DOE OSTI2022

An analysis of the hybrid internal mass modeling approach in EnergyPlus

Accurate simulation of building system dynamics is particularly important for understanding building energy flexibility. Among all dynamics in a building, a zone temperature’s variation is especially important, as it significantly affects a building’s electricity load profile when its heating, ventilating, and air conditioning (HVAC) system is controlled with on/off cycles or setpoint reset strategies. To accurately simulate a zone temperature’s dynamics, internal mass needs to be modeled carefully. In this paper, we compare the two internal mass modeling approaches provided by EnergyPlus, i.e., internal mass object and zone air capacitance multiplier, to better understand their impacts on zone temperature simulation. Real building zone temperature dynamic data from small- and medium-sized office buildings are analyzed and compared with simulated data. In particular, we illustrate the effectiveness of a hybrid method of the two EnergyPlus modeling approaches, which yields more realistic zone temperature dynamics, especially when the zone is conditioned with heat pump systems with on/off cycling.

Chen, Zhelun↗

DOE OSTI2025

A search for Heavy Neutral Leptons with masses up to 150 MeV and studies on scintillation light detection in SBND

Introduction Neutrino physics is one of today’s most promising fields in particle physics. The discovery of neutrino oscillations is an evidence of their mass not being null. However, the Standard Model of elementary particles (SM) does not contain a mechanism that generates them, so we have to search beyond the SM to find answers. Other unknowns remain open, such as the amount of CP symmetry violated in the lepton sector that could help explain the differences between matter and antimatter that formed the present universe. Nor is it understood why these particles are so light, more than six orders of magnitude below the next fermion, the electron. A possible explanation is the existence of heavier neutrino mass states usually referred as heavy neutral leptons (HNLs). One of the most advanced technologies for detecting neutrino interactions is the liquid argon time projection chamber (LArTPC). LArTPC detectors form a 3D image of the ionized electrons in the interaction, producing a detailed description of each neutrino event. Argon is also a prolific scintillator (40k photons/MeV) with light signals indicating the interaction time. The Short-Baseline Near Detector (SBND), a 112-active mass LArTPC at Fermilab, will measure millions of neutrino interactions from the Booster Neutrino Beam (BNB). As the near (L=110 m) detector of the Short-Baseline neutrino program, SBND will search for a fourth light neutrino (∼ eV) in the coming years. This hypothesis could explain the anomalous data observed in the LSND and MiniBooNE experiments.

Álvarez Garrote, Rodrigo [Madrid U.] (ORCID:000000↗

DOE OSTI2025

DECADE+DES Y3 Weak Lensing Mass Map: A 13,000 deg$^2$ View of Cosmic Structure from 270 Million Galaxies

We present the largest galaxy weak lensing mass map of the late-time Universe, reconstructed from 270 million galaxies in the DECADE and DES Year 3 datasets, covering 13,000 square degrees. We validate the map through systematic tests against observational conditions (depth, seeing, etc.), finding the map is statistically consistent with no contamination. The large area covered by the mass map makes it a well-suited tool for cosmological analyses, cross-correlation studies and the identification of large-scale structure features. We demonstrate its potential by detecting cosmic filaments directly from the mass map for the first time and validating them through their association with galaxy clusters selected using the Sunyaev-Zeldovich effect from Planck and ACT DR6.

Gatti, M. [Chicago U., KICP] (ORCID:00000001613487↗

DOE OSTI2025

Mass spectrometry structural analysis of intrinsically disordered phosphoproteins

Phosphorylation is a ubiquitous protein modification that is known to play important roles in many biological phenomena including cell signaling, the opening and closing of membrane protein channels, and even triggering of amyloid protein aggregation. Despite the effects phosphorylation has on protein function, the impact phosphorylation has on the structure of proteins is not well understood. Here, to determine how phosphorylation affects the structure of proteins, top-down mass spectrometry (TD-MS) and ion mobility-mass spectrometry (IM-MS) were performed on various phosphorylated proteins and their dephosphorylated proteoforms. TD-MS with collision- and electron-based fragmentation techniques was utilized to locate phosphorylation sites on the intrinsically disordered amyloid proteins β-casein and α-synuclein. TD-MS also provided evidence that alkaline phosphatase dephosphorylates β-casein from the N-terminus to the C-terminus. Furthermore, IM-MS of common phosphorylated proteins such as β-casein, α-casein, ovalbumin, and phosvitin indicates that phosphorylation promotes compaction of protein structure in denaturing as well as native conditions. Increases in abundance of more compact conformers are also observed when the disease related amyloid protein α-synuclein is phosphorylated at serine 129. We interpret the increased abundance of more compact conformers when proteins are phosphorylated as evidence that salt bridges form between negatively charged phosphates and positively charged residues, which alters protein structure. Salt bridge formation due to phosphorylation could be a mechanism for regulating protein function and be responsible for many of the phenomena observed in nature.

Amyloid proteins↗

DOE OSTI2022

Optimization of metal-supported solid oxide fuel cells with a focus on mass transport

Performance of symmetric-architecture metal-supported solid oxide fuel cells was improved significantly by optimizing the catalyst infiltration process and metal support structure. Optimization of component structure and processing parameters was performed during tape-casting and fabrication of button cells. Mass transport of oxygen in the metal support was identified as a major limitation. To overcome this limitation, pore former loading and thickness of the metal support (130–250 μm) were optimized. The catalyst infiltration process was also improved by studying the impact of firing temperature (400 °C–900 °C) and infiltration cycle numbers (1–15). The maximum power density of the optimized cell was 0.9 W cm –2 at 700°C using hydrogen as a fuel, a three-fold increase over the baseline cell performance. The degradation rate of optimized cells at 550 °C, 600 °C, and 700 °C was 2%, 4.5%, and 5.5% per 100 h, respectively. Here, the phenomena of mass transport, catalyst coarsening, and chromium poisoning on the catalyst were analyzed by electrochemical impedance spectroscopy and scanning electron microscopy.

13 HYDRO ENERGY↗

DOE OSTI2026

Desorption Electrospray Ionization–Mass Spectrometry Imaging Provides Spatiochemical Information on Potential Biocontrol Agents against Phytophthora capsici Infection in Tomato Plants

Biological control agents can offer an eco-friendly and more sustainable alternative to conventional chemical pesticides, providing protection against destructive pathogens, such as Phytophthora capsici, while reducing potential environmental harm associated with synthetic pesticide use in agricultural systems. This work evaluates the biocontrol effectiveness of Bacillus vallismortis, Bacillus amyloliquefaciens, Bacillus thuringiensis, and Bacillus subtilis, against the widespread plant pathogen Phytophthora capsici. Our studies showed that Bacillus thuringiensis and Bacillus subtilis promote plant growth and provide protection against Phytophthora capsici in both in vitro and in vivo greenhouse studies, while Bacillus vallismortis and Bacillus amyloliquefaciens were effective in vitro but not in vivo. Specifically, Bacillus thuringiensis was observed to both hinder the growth of Phytophthora capsici and enhance plant resilience to this pathogen, with B. thuringiensis-treated, pathogen-exposed plants displaying a 94.4% increase in root length and a 74.0% increase in shoot height compared to plants with only oomycete exposure. To probe the molecular interactions between the biocontrol agent and pathogen, a dual culture of Bacillus thuringiensis and Phytophthora capsici was analyzed in situ using a desorption electrospray ionization–mass spectrometry imaging (DESI-MSI) workflow. This approach interrogated the spatially oriented biochemical interactions that may serve as the molecular foundation for the effectiveness of these biological control agents in crop protection, identifying seven unique phenotypic regions within the dual culture. Herein, we demonstrate the benefits of biological control agent application in tomato cultivation and showcase the strengths of desorption electrospray ionization–mass spectrometry imaging when applied to the spatially resolved molecular characterization of agriculturally relevant microorganisms.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2022

KATRIN: status and prospects for the neutrino mass and beyond

Abstract The Karlsruhe Tritium Neutrino (KATRIN) experiment is designed to measure a high-precision integral spectrum of the endpoint region of T 2 β decay, with the primary goal of probing the absolute mass scale of the neutrino. After a first tritium commissioning campaign in 2018, the experiment has been regularly running since 2019, and in its first two measurement campaigns has already achieved a sub-eV sensitivity. After 1000 days of data-taking, KATRIN’s design sensitivity is 0.2 eV at the 90% confidence level. In this white paper we describe the current status of KATRIN; explore prospects for measuring the neutrino mass and other physics observables, including sterile neutrinos and other beyond-Standard-Model hypotheses; and discuss research-and-development projects that may further improve the KATRIN sensitivity.

beyond standard model↗

DOE OSTI2022

High-precision mass measurement of Si 24 and a refined determination of the r p process at the A = 22 waiting point

We report a high-precision mass measurement of 24 Si, performed with the Low Energy Beam and Ion Trap (LEBIT) facility at the National Superconducting Cyclotron Laboratory. The atomic mass excess, 10 753.8 (37) keV, is a factor of 5 more precise than previous results. This substantially reduces the uncertainty of the 23 Al(p ,γ) 24 Si reaction rate, which is a key part of the rapid proton capture (rp) process powering type I x-ray bursts. Furthermore, the updated rate constrains the onset temperature of the (α,p) process at the 22 Mg waiting point to a precision of 9%.

20 ≤ A ≤ 38↗

DOE OSTI2024

Heating effects on pyrogenic organic matter mass loss and temperature in a sand matrix in a lab setting from 2022

This dataset contains data associated with the preprint “A laboratory method for simulating the effects of subsequent fires on pyrogenic organic matter at different exposure depths in a sand matrix” (https://doi.org/10.1101/2024.07.30.605814), which has been accepted for publication in the International Journal of Wildland Fire. The dataset was generated to investigate the effects of subsequent fires on preexisting pyrogenic organic matter (PyOM) at different soil depths. Specifically, we designed a laboratory method to simulate soil heating from above, applying realistic heat flux profiles (High, Low, Control) derived from jack pine (Pinus banksiana Lamb.) log burns. Using a cone calorimeter, these profiles were applied to buried jack pine PyOM (produced at 350°C) in a sand matrix pyrocosm to examine PyOM mass loss at different depths (surface, 1 cm, 5 cm). Each treatment (e.g., High heat flux at 1 cm depth) was applied once to five replicates in a pyrocosm.The dataset includes mass loss fraction of PyOM and time-series temperature profiles (measured with type K thermocouples). Additionally, calibration datasets for high and low heat flux profiles are provided, including programmed heat flux profile data and three sets of calibration results. All datasets are in .csv format and were analyzed in R using code found at https://github.com/MengmengLuo/Reburning-pyrogenic-organic-matter-A-laboratory-method-for-dosing-dynamic-heat-fluxes-from-above. This dataset supports research on PyOM transformations during subsequent fires, and methodological advancements in simulating soil heating. It can be used to explore fire-induced PyOM alterations across different fire intensities and soil depths.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2026

Untargeted, tandem mass spectrometry (LC/MS-MS) metaproteomes from soil samples in control and warming plots in Blodgett Forest, CA (2014-2021)

The pathways of carbon transport and loss through and from soils—soil organic matter (SOM) depolymerization to dissolved organic carbon and mineralization to carbon dioxide (CO2)—are fundamentally driven by microbial activity, which is strongly regulated by environmental conditions. As part of Lawrence Berkeley National Laboratory (LBNL) Terrestrial Ecosystem Science (TES) Belowground Biogeochemistry Science Focus Area (SFA), we have established a novel whole-soil long-term warming experiment at the University of California (UC) Blodgett Forest Research Station (Sierra Nevada) in 2014, where we study the role of biogeochemical, microbial and geochemical process interactions in SOM decomposition and stabilization. This package contains soil metaproteomics data in the context of site specific metagenomes from soil depth profiles in three paired control and warming plots from a temperate mixed forest in Northern California. Each paired plot had been subjected to experimental warming since June 2014 to simulate a predicted climate change scenario for northern California. These metaproteomes were collected in 2018 after 4.5 years of warming from five depth intervals (0-10 cm, 10-30 cm, 30-45 cm, 45-60 cm, 60-80 cm). For protein identification, the collected spectra were searched following a target-decoy search strategy against a database of metagenome predicted proteins (covering 96 samples from 2014 to 2021) representing the complete sequence diversity at the site. Data was searched with mass spectrometry database search tool (MS-GF+) using Pacific Northwest National Laboratory (PNNL)'s Data Management System (DMS) Processing pipeline. The metagenomes are published as part of another data package. Raw metaproteomic data and the data products from MS-GF+ are deposited in the Mass Spectrometry Interactive Virtual Environment (MassIVE) database under accession no. MSV000097826. Here we present a dataset that includes spectral counts for the detected proteins across samples (EMSL50964_BrodieAllMAGs_Globals_SC.txt), the sequences of the detected proteins, and sample metadata file that contains site information for the soil metaproteome samples.

Belowground Biogeochemistry Science Focus Area↗

DOE OSTI2020

Uranium Mass Attribute System (UMAS) Study: Evaluation of Options against the Arms Control Evaluation Criteria

In this FY19 study, a range of possible measurement systems for confirming a U-235 mass attribute were identified. The systems were reviewed for their applicability in a potential future arms control agreement, and a subset of the eight most plausible systems were selected for further evaluation against the Arms Control Evaluation Criteria (ACEC). The evaluation results were then used to identify a primary and secondary recommended measurement system for confirming a U-235 mass attribute on warheads, nuclear components of warheads, and/or materials as part of a hypothetical arms control agreement.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗

DOE OSTI2022

Resolving Graphite‐Electrolyte Interphase of Lithium‐Ion Batteries using Air‐Tight Ambient Mass Spectrometry

Abstract The formation of a stable solid electrolyte interphase (SEI) at graphite electrode is necessary for lithium‐ion batteries (LIB) to prevent excessive degradation of electrolytes. Until now, the exact organic composition of SEI has not been decisively determined with lithium ethylene mono‐carbonate (LEMC) being one of the debated components. An air‐tight ambient mass spectrometry (MS) platform is developed to directly characterize the air‐sensitive organic components present in SEI. Ionization occurs via a solvent‐free field‐induced process at atmospheric pressure. Our experimental data, based on tandem MS analysis, revealed LEMC to be the major organic component in SEI. This result resolves a long‐standing mystery surrounding the composition of native SEI in LIB, where no trace of the other debated compound, lithium ethylene dicarbonate, was detected. The energetics of fragmentation of LEMC and the corresponding stabilities of various ionic species detected during the air‐tight ambient MS analysis were calculated using density functional theory (DFT). Our findings confirmed favorable protonation energies and suggested the molecular structures for many of the detected species. Solvent (i. e., ethylene carbonate)‐induced stabilization effects observed during the ionization process were also confirmed by DFT. The reported study encourages the routine use of ambient mass spectrometry to characterize both anodic and cathodic electrodes of all battery types as well as to study other air‐sensitive materials in their native state.

25 ENERGY STORAGE↗

DOE OSTI2022

Energy-resolved mass spectrometry as a tool for identification of lignin depolymerization products

Lignin is the largest source of bio-based aromatic compounds in nature, and its valorization is essential to the sustainability of lignocellulosic biorefining. Characterizing lignin-derived compounds remains challenging due to the heterogeneity of this biopolymer. Tandem mass spectrometry is a promising tool for lignin structural analytics, as fragmentation patterns of model compounds can be extrapolated to identify characteristic moieties in complex samples. This work extends previous resonance excitation type collision-induced dissociation (CID) methods that identified lignin oligomers containing β-Ο-4, β-5, and β-β bonds, to also identify characteristics of 5-5, β-1, and 4-Ο-5 dimers, enabled by quadrupole time-of-flight (QTOF) CID with energy-resolved mass spectrometry (ERMS). Overall, beam type ERMS offers in-depth structural information and could ultimately contribute to tools for high-throughput lignin dimer identification.

09 BIOMASS FUELS↗

DOE OSTI2024

Computational tools and algorithms for ion mobility spectrometry-mass spectrometry

Ion mobility spectrometry-mass spectrometry (IMS-MS or IM-MS) is a powerful analytical technique that combines the gas-phase separation capabilities of IM with the identification and quantification capabilities of MS. IM-MS can differentiate molecules with indistinguishable masses but different structures (e.g., isomers, isobars, molecular classes, and contaminant ions). The importance of this analytical technique is reflected by a staged increase in the number of applications for molecular characterization across a variety of fields, from different MS-based omics (proteomics, metabolomics, lipidomics, etc.) to the structural characterization of glycans, organic matter, proteins, and macromolecular complexes. With the increasing application of IM-MS there is a pressing need for effective and accessible computational tools. This article presents an overview of the most recent free and open-source software tools specifically tailored for the analysis and interpretation of data derived from IM-MS instrumentation. This review enumerates these tools and outlines their main algorithmic approaches, while highlighting representative applications across different fields. Finally, a discussion of current limitations and expectable improvements is presented.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Design of an Online Electrochemical Mass Spectrometry System to Study Gas Evolution from Cells with Lean and Volatile Electrolytes

Gas evolution in high-energy Li-ion batteries remains a pervasive problem for a multitude of chemistries, jeopardizing the electrochemical performance and safety for consumers of electric vehicles. Many electrode–electrolyte degradation processes evolve gasses that may be detected in-situ with online electrochemical mass spectrometry (OEMS). In this work, details are provided for the setup and validation of an OEMS system that operates well under lean and volatile electrolyte conditions. Quite notably, the OEMS cells with only 40 µL of electrolyte and intermittent headspace sampling exhibit comparable electrochemical performance to flooded coin-cells. It is demonstrated that the onset time, shape, and magnitude of the gas evolution profiles calculated from mass spectrometer measurements match well to a known pressure reference through the use of an empirically determined fraction of removal. The off-gassing characteristics from a set of layered-oxide materials, NMC532, NMC811, and LNO, are used to further validate the OEMS setup against the literature. It is shown that many of the features present in the OEMS curves for equivalent systems from other groups are captured by this OEMS system. Finally, at an upper cut-off voltage of 4.4 V, LNO exhibits an intense release of CO 2 , O 2 , and CO gas relative to NMC532 and NMC811.

25 ENERGY STORAGE↗