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TU-D-201-04: Veracity of Data Elements in Radiation Oncology Incident Learning Systems

Purpose: Incident learning systems encompass volumes, varieties, values, and velocities of underlying data elements consistent with the V’s of big data. Veracity, the 5th V however exists only if there is high inter-rater reliability (IRR) within the data elements. The purpose of this work was to assess IRR in the nationally deployed RO-ILS: Radiation Oncology-Incident Learning System (R) sponsored by the American Society for Radiation Oncology (ASTRO) and the American Association of Physicists in Medicine (AAPM). Methods: Ten incident reports covering a wide range of scenarios were created in standardized narrative and video formats and disseminated to 67 volunteers of multiple disciplines from 26 institutions along with two published narratives from the International Commission of Radiological Protection to assess IRR on a nationally representative level. The volunteers were instructed to independently enter the associated data elements in a test version of RO-ILS over a 3-week period. All responses were aggregated into a spreadsheet to assess IRR using free-marginal kappa metrics. Results: 48 volunteers from 21 institutions completed all reports in the study period. The average kappa score for all raters across all critical data elements was 0.659 [range 0.326–1.000]. Statistically significant differences (p <0.05) were noted between reporters of different disciplines and raters with varying levels of experience. Kappa scores were high for event classification (0.781) and contributory factors (0.777) and low for likelihood-of-harm (0.326). IRR was highest among AAPM-ASTRO members (0.672) and lowest among trainees (0.463). Conclusion: A moderate-to-substantial level of IRR in RO-ILS was noted in this study. Although the number of events reviewed in this study was small, opportunities for improving the taxonomy for the lower scoring data elements as well as specific educational targets for training were identified by assessing data veracity quantitatively. This is expected to improve the quality of the data garnered from RO-ILS.

60 APPLIED LIFE SCIENCES↗

Modular Finite Element Methods

MFEM is a free, lightweight, scalable C++ library for finite element methods. The goal of MFEM is to enable research and development of scalable finite element discretization and solver algorithms through general finite element abstractions, accurate and flexible visualization, and tight integration with the hypre library. Conceptually, MFEM can be viewed as a finite element toolbox that provides the building blocks for developing finite element algorithms in a manner similar to that of MATLAB for linear algebra methods.

ECP↗

Analysis of Rare Earth Elements in Uranium Using Handheld Laser-Induced Breakdown Spectroscopy (HH LIBS)

In this paper, a portable handheld laser-induced breakdown spectroscopy (HH LIBS) instrument was evaluated as a rapid method to qualitatively analyze rare earth elements in a uranium oxide matrix. This research is motivated by the need for development of a method to perform rapid, at-line chemical analysis in a nuclear facility, particularly to provide a rapid first pass analysis to determine if additional actions or measurements are warranted. This will result in the minimization of handling and transport of radiological and nuclear material and subsequent exposure to their associated hazards. In this work, rare earth elements (Eu, Nd, and Yb) were quantitatively spiked into a uranium oxide powder and analyzed by the HH LIBS instrumentation. This method demonstrates the ability to rapidly identify elemental constituents in sub-percent levels in a uranium matrix. Preliminary limits of detection (LODs) were determined with values on the order of hundredths of a percent. Validity of this methodology was explored by employing a National Institute of Standards and Technology (NIST) standard reference materials (SRM) 610 and 612 (Trace Elements in Glass). Finally, it was determined that the HH LIBS method was able to clearly discern the rare earths elements of interest in the glass or uranium matrices.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Camellia: A Rapid Development Framework for Finite Element Solvers

We report the discontinuous Petrov–Galerkin (DPG) methodology of Demkowicz and Gopalakrishnan guarantees the optimality of the finite element solution in a user-controllable energy norm, and provides several features supporting adaptive schemes. The approach provides stability automatically; there is no need for carefully derived numerical fluxes (as in DG schemes) or for mesh-dependent stabilization terms (as in stabilized methods). In this paper, we focus on features of Camellia that facilitate implementation of new DPG formulations; chief among these is a rich set of features in support of symbolic manipulation, which allow, e.g., bilinear formulations in the code to appear much as they would on paper. Many of these features are general in the sense that they can also be used in the implementation of other finite element formulations. In fact, because DPG’s requirements are essentially a superset of those of other finite element methods, Camellia provides built-in support for most common methods. We believe, however, that the combination of an essentially “hands-free” finite element methodology as found in DPG with the rapid development features of Camellia are particularly winsome, so we focus on use cases in this class. In addition to the symbolic manipulation features mentioned above, Camellia offers support for one-irregular adaptive meshes in 1D, 2D, 3D, and space-time. It provides a geometric multigrid preconditioner particularly suited for DPG problems, and supports distributed parallel execution using MPI. For its load balancing and distributed data structures, Camellia relies on packages from the Trilinos project, which simplifies interfacing with other computational science packages. Camellia also allows loading of standard mesh formats through an interface with the MOAB package. Camellia includes support for static condensation to eliminate element-interior degrees of freedom locally, usually resulting in substantial reduction of the cost of the global problem. Finally, we include a discussion of the variational formulations built into Camellia, with references to those formulations in the literature, as well as an MPI performance study.

97 MATHEMATICS AND COMPUTING↗

Simulating Electron Impact Ionization using a General Particle Tracer (GPT) Custom Element

A new C++ custom element has been developed with the framework of General Particle Tracer (GPT) to simulate electron impact ionization of residual gas molecules. The custom element uses Monte-Carlo routines to determine both the ion production rate and the secondary electron kinetic energy based on user-defined gas densities and theoretical values for the ionization cross section and the secondary electron differential cross section. It then uses relativistic kinematics to track the secondary electron, the scattered electron, and the newly formed ion after ionization. The ion production rate and the secondary electron energy distribution determined by the custom element have been benchmarked against theoretical calculations and against simulations made using the simulation package IBSimu. While the custom element was originally built for particle accelerator simulations, it is readily extensible to other applications. The custom element will be described in detail and examples of applications at the Thomas Jefferson National Accelerator Facility will be presented for ion production in a DC high voltage photo-gun.

Yoskowitz, J. T.↗

Construction of Hexahedral Elements Mesh Capturing Realistic Geometries of Bayou Choctaw SPR Site

The three-dimensional finite element mesh capturing realistic geometries of Bayou Choctaw site has been constructed using the sonar and seismic survey data obtained from the field. The mesh is consisting of hexahedral elements because the salt constitutive model is coded using hexahedral elements. Various ideas and techniques to construct finite element mesh capturing artificially and naturally formed geometries are provided. The techniques to reduce the number of elements as much as possible to save on computer run time with maintaining the computational accuracy is also introduced. The steps and methodologies could be applied to construct the meshes of Big Hill, Bryan Mound, and West Hackberry strategic petroleum reserve sites. The methodology could be applied to the complicated shape masses for not only various civil and geological structures but also biological applications such as artificial limbs.

42 ENGINEERING↗

Verification of Advective Bar Elements Implemented in the Aria Thermal Response Code.

A verification effort was undertaken to evaluate the implementation of the new advective bar capability in the Aria thermal response code. Several approaches to the verification process were taken : a mesh refinement study to demonstrate solution convergence in the fluid and the solid, visually examining the mapping of the advective bar element nodes to the surrounding surfaces, and a comparison of solutions produced using the advective bars for simple geometries with solutions from commercial CFD software . The mesh refinement study has shown solution convergence for simple pipe flow in both temperature and velocity . Guidelines were provided to achieve appropriate meshes between the advective bar elements and the surrounding volume. Simulations of pipe flow using advective bars elements in Aria have been compared to simulations using the commercial CFD software ANSYS Fluent (r) and provided comparable solutions in temperature and velocity supporting proper implementation of the new capability. Verification of Advective Bar Elements iv Acknowledgements A special thanks goes to Dean Dobranich for his guidance and expertise through all stages of this effort . His advice and feedback was instrumental to its completion. Thanks also goes to Sam Subia and Tolu Okusanya for helping to plan many of the verification activities performed in this document. Thank you to Sam, Justin Lamb and Victor Brunini for their assistance in resolving issues encountered with running the advective bar element model. Finally, thanks goes to Dean, Sam, and Adam Hetzler for reviewing the document and providing very valuable comments.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Generalization of mixed multiscale finite element methods with applications

Many science and engineering problems exhibit scale disparity and high contrast. The small scale features cannot be omitted in the physical models because they can affect the macroscopic behavior of the problems. However, resolving all the scales in these problems can be prohibitively expensive. As a consequence, some types of model reduction techniques are required to design efficient solution algorithms. For practical purpose, we are interested in mixed finite element problems as they produce solutions with certain conservative properties. Existing multiscale methods for such problems include the mixed multiscale finite element methods. We show that for complicated problems, the mixed multiscale finite element methods may not be able to produce reliable approximations. This motivates the need of enrichment for coarse spaces. Two enrichment approaches are proposed, one is based on generalized multiscale finte element metthods (GMsFEM), while the other is based on spectral element-based algebraic multigrid (rAMGe). The former one, which is called mixed GMsFEM, is developed for both Darcy’s flow and linear elasticity. Application of the algorithm in two-phase flow simulations are demonstrated. For linear elasticity, the algorithm is subtly modified due to the symmetry requirement of the stress tensor. The latter enrichment approach is based on rAMGe. The algorithm differs from GMsFEM in that both of the velocity and pressure spaces are coarsened. Due the multigrid nature of the algorithm, recursive application is available, which results in an efficient multilevel construction of the coarse spaces. Stability, convergence analysis, and exhaustive numerical experiments are carried out to validate the proposed enrichment approaches. iii

97 MATHEMATICS AND COMPUTING↗

Evaluation of Erosion of the Dummy “EE” Plate 19 in YA Type ATR Fuel Element During Reactor PALM Cycles

Advanced Test Reactor (ATR) Cycle 153B-1 was a 14-day, high-power, powered axial locator mechanism (PALM) operating cycle that completed on April 12, 2013. Cycle 153B-1 was a typical operating cycle for the ATR, and did not result in any unusual plant transients. ATR was started up and shut down as scheduled. The PALM drive physically moves the selected experiments into and out of the core to simulate reactor startup and heat up, and shutdown and cooldown transients, while the reactor remains in steady-state conditions. However, after the cycle was over, when the fuel elements were removed from the core and inspected, several thousand flow-assisted erosion pits and “horseshoeing” defects were readily observed on the surface of the several YA-type fuel elements (these are aluminum “dummy” plates that contain no fuel). In order to understand these erosion phenomena, a thermal-hydraulic model of coolant channel 20 on a YA-M fuel element was generated. The boundaries of the model were the aluminum EE plate of a YA-M fuel element and a beryllium reflector block with 13 horizontal saw cuts which represented regions of zero flow. The heat generated in fuel plates 1 through 18 was modeled to be passing through the aluminum EE plate. The coolant channel 20 width was set at 0.058 in. (58 mils). It was established that the horizontal saw cuts had a significant effect on the temperature of the coolant. The flow, which was expected to vary linearly with gradual heating of the coolant as it passed through the channel, was extremely turbulent. The temperature rise, which was expected to be a smooth “S” curve, was represented by a series temperature rise “humps,” which occurred at each horizontal saw cut in the beryllium reflector block. Each of the 13 saw cuts had a chamfered edge which resulted in the coolant flow being re-directed as a jet across the coolant channel into the surface of the EE plate, which explained the temperature rise and the observed scalloping and pitting degradation on the YA-M fuel elements. In the case of scalloping (horseshoeing) a surprising similarity of that defect to those appearing on aluminum plate rolled in over-lubrication conditions, were established. In turn, this made us think that the principal feature responsible for the appearance of these defects, was horizontal cuts in the beryllium reflector block created to arrest the propagation of large vertical crack(s) in Be in PALM cycles with higher overall fluence. This assumption was fully confirmed by the results of thermo-hydraulic simulations. The neutronics data for these modeling experiments were provided using advanced irradiation simulations (MCNP, HELIOS). In the case of pitting erosion the following corrective measures were proposed based upon the results of JMatPro v.8.2 modeling (TTT- and CCT-diagrams): change the fabrication process by adding blister anneal before program anneal, immediately after cold rolling of AA6061plate. This step will allow achieving complete recrystallization, eliminating of strengthening due to metastable precipitates, and reduce the possibility of forming sharp microstructural features upon the surface.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Economic Extraction, Recovery and Upgrading of Rare Earth Elements from Coal-Based Resources

The overall objective of this project is to produce a rare earth elements product with greater than 8% rare earth elements from coal-based resources using an economically viable and environmentally benign processing methodology. The objective of the coal processing work will be to acquire appropriate coal feed and produce a viable clean coal product, a concentrated REE feed stream, and a pyrite stream (where available) that can be used to enhance leaching. The objective of the bio-oxidation portion of the project is to utilize bacteria to oxidize sulfide minerals and ferrous ions to ferric ions to accelerate leaching and remove the sulfides to prevent future acid mine drainage and related liabilities. The objective of the solution conditioning work is to remove iron and control leaching solution conditions to facilitate extraction of REEs without significant thorium extraction. The objective of the column leaching work is to engineer/model and simulate heap leaching to demonstrate low-cost extraction of REEs from coal-based resources. The objective of the solvent extraction work is to selectively extract and recover through controlled stripping of REEs that are solubilized through leaching. The objective of the precipitation portion of the project is to recover the REEs from the solvent extraction stripping solutions and dry them to achieve the final product of rare earth elements that is > 8 % REEs. The objective of the technical, economic, and environmental analysis is to determine the overall viability of the processing approach that is demonstrated in this project. This project encompasses a range of technologies that are currently in industrial practice that are applied and engineered to produce rare earth element product from coal feed sources. The potential sources include large coal feed resources in active coal mines in addition to coal waste. This technology involves the utilization of advanced coal processing technology that can be used to deliver clean coal for the market as well as rare-earth-element-bearing non-coal rock that is of the correct size for heap leaching applications in addition to providing concentrated sulfide minerals (for mid to high sulfur coals) for cleaner coal and for enhanced bio-oxidation to accelerate leaching of REEs from the non-coal rock. The removal of the sulfide minerals cleans the coal, accelerates subsequent REEs extraction, and it removes the future potential for most acid-rock drainage. (For low sulfur coals some pyrite may be purchased if needed.) The processing method also utilizes bio-oxidation to enhance ferric ion production to enhance leaching, while also consuming the sulfide mineral and its associated environmental liability. The project includes a technical, economic, and environmental analysis to facilitate an appropriate assessment of commercial viability for this processing technology.

01 COAL, LIGNITE, AND PEAT↗

Hex Element Aspect Ratio and Formulation

When modeling thin structures, some analysts use shell elements. Others choose hex elements. Both element types have their advantages and disadvantages. This memo describes a weakness of using hex elements to model bending. Specifically, the accuracy degrades as the element aspect ratio increases. This study illustrates this effect for the mean quadrature and the selective deviatoric formulations. For the test case considered, the selective deviatoric formulation produces larger errors.

42 ENGINEERING↗

2020 Results for Avian Monitoring of Inorganic and Organic Element Concentrations in Passerine Eggs and Nestlings Collected from Technical Area 16 Burn Grounds, Technical Area 36 Minie, and Technical Area 39 Point 6 at Los Alamos National Laboratory

In 2020, non-viable avian eggs and two nestling were opportunistically collected at Los Alamos National Laboratory (LANL) near open detonation sites located at Technical Area (TA) 16 burn grounds, TA-36 Minie, and TA-39 Point 6. These samples were evaluated for inorganic elements (mostly metals), dioxins, and furans. A total of six eggs and two deceased western bluebird (Sialia mexicana) nestling samples were collected among the three locations of interest. Concentrations of inorganic elements observed in this study were compared with the regional statistical reference level (RSRL) which is the upper-level bounds of background concentrations (mean + three standard deviations = 99% confidence interval). Several inorganic elements were not detected in avian eggs and all inorganic elements detected were below the RSRL and the lowest observable adverse effect level (LOAEL), when available. One nestling collected from TA-39 contained detectable concentrations of two dioxin congeners. Heptachlorodibenzodioxin-1,2,3,4,6,7,8 and octachlorodibenzodioxin-1,2,3,4,6,7,8,9 concentration exceeded the RSRL, but did not exceed the calculated tetrachlorodibenzodioxin 2,3,7,8 (TCDD) toxic equivalent LOAEL. These data suggest that inorganic and organic element concentrations in eggs and nestlings are not of ecological concern. More data are needed to make a robust assessment and to evaluate trends over time.

54 ENVIRONMENTAL SCIENCES↗

Properties, Theory, and Measurements for Understanding the Function of Heavy Elements (Project 20180474CR, Final Technical Report)

The FY18-20 Laboratory Directed Research and Development (LDRD) funded Properties, Theory, and Measurements for Understanding the Function of Heavy Elements Project aim has been to advance heavy element science in a comprehensive project connecting targeted research with Los Alamos mission imperatives. The mechanisms for project implementation were (1) support of a multi-year broad-based postdoctoral fellows project, (2) a summer student fellows research project and two seminar series, and (3) organization of structured workshops and integrated educational and career development opportunities. The project was successfully administered by the Glenn T. Seaborg Institute (GTSI) for Transactinium Science and has shown to be an exceptional investment in supporting the Los Alamos National Laboratory (LANL) mission areas requiring heavy element and actinide science by attracting and funding the future generation of scientists and engineers. This project exhibited its value across the laboratory in heavy element and actinide science areas include materials, material properties, signatures, modeling, predictions, fabrication, detection, disposal, global security implications, forensics, and the specialized science surrounding plutonium, uranium, and their surrogates as fuels for energy and nuclear weapons. In this report, the GTSI project staff documents the “high return on investment” implementation as measured against the successes of previous actinide research and science-based projects and as evidenced by the retention of 30% of G.T. Seaborg Postdoctoral Fellows as permanent employees. With additional funding through LDRD Reserve funding during this project period, the GTSI expanded its support for heavy element and actinide science research with a Visiting Research Seaborg Scholar and a Rapid Response Small Projects call. These innovations have served to advance GTSI pursuits as communicated in our FY21-23 LDRD Proposal Project#: 20210527CR Seaborg Institute: Center for Advancing Actinide Science and Technology at LANL

36 MATERIALS SCIENCE↗

Verification Testing For Solid-Element Material Models 11-19 in DYNA3D/ParaDyn

This technical report documents the creation and implementation of verification tests for solid-element material models 11 through 19 available in DYNA3D/ParaDyn. The verification tests covered all aspects of each material model, except for the Weibull distribution functionality in material models 15 and 19. General test cases were created to verify the elastic and plastic behavior of the material models. Other additional tests were developed to examine the intricacies of each material model. Each test involved the use a kinematic load case and specification of material parameters necessary to activate corresponding features of the material model. The load cases prescribed the full time history of the kinematic motion for the solid elements, and these loads are independent of the material model or element formulation. When possible, closed form solutions were then derived for each verification test in a continuum setting. The DYNA3D simulations for each test were carried out over a unit time interval, t ϵ [0, 1], and the as implemented DYNA3D response was compared to the closed form solutions evaluated at discrete points in time. A relative error measure was determined for each test to justify the proper implementation of the material model. The relative errors comparing the DYNA3D solution to the analytical solution were, in general, on the order of machine precision except where noted. This signifies the proper implementation of solid-element material models 11-19. In the development of these verification tests, six bugs were found and fixed in the source code. Additionally, this work generated eighteen DYNA3D input decks and answer extraction scripts in the DYNA3D/ParaDyn Software Quality Assurance test suite, which are comprised of a total of 285 solid-element tests. Testing for each material model utilizes two input decks and answer extraction scripts, where one focuses on the linear elastic response and the other examines the inelastic and remaining functionalities of the material model. In total, this work added 285 individual verification test problems in the DYNA3D/ParaDyn test suite.

42 ENGINEERING↗

2021 Results for Avian Monitoring of Inorganic and Organic Element Concentrations in Passerine Eggs and Nestlings Collected from Technical Area 16 Burn Grounds, Technical Area 36 Minie, and Technical Area 39 Point 6 at Los Alamos National Laboratory (Rev. 2)

In 2021, non-viable avian eggs and one nestling were opportunistically collected at Los Alamos National Laboratory (LANL) near open detonation sites located at Technical Area (TA) 16 burn grounds and TA-36 Minie. Similar to previous years, nestboxes were monitored at TA-39 Point 6, however, no avian samples were available for opportunistic collection. Samples were evaluated for inorganic elements (mostly metals), dioxins, and furans. One ash-throated flycatcher (Myiarchus cinerascens) egg sample was collected from TA-16 burn grounds. One ash-throated flycatcher and one mountain bluebird (Sialia currucoides) egg sample and one deceased western bluebird (Sialia mexicana) nestling sample were collected from TA-36 Minie. Concentrations of inorganic elements observed in this study were compared with the regional statistical reference level (RSRL) which is the upper-level bounds of background concentrations (mean + three standard deviations = 99% confidence interval). Several inorganic elements were not detected in avian eggs. Most inorganic elements detected were below the RSRL and all were the lowest observable adverse effect level (LOAEL), when available. The nestling collected from TA-36 did not contain detectable concentrations of dioxin or furan congeners. These data suggest that inorganic and organic element concentrations in eggs and nestlings are not of ecological concern. More data are needed to make a robust assessment and to evaluate trends over time.

54 ENVIRONMENTAL SCIENCES↗

Preliminary Assessment of Elemental Analysis of X-Ray Fluorescence with Genetic Algorithm

X-ray fluorescence (XRF) spectroscopy is a promising approach to elemental analysis of forensic samples. Elements in the mixture can be identified from the XRF data because chemical elements are associated with unique spectra. This report consists of preliminary assessment of automated identification of unknown mixtures of elements from XRF spectra using a genetic algorithm (GA). The XRF spectra are measured at the Advanced Photon Source (APS) at the liquid-liquid interface during solvent extraction process. Possible advantages of using GA for identifying elements at the interface from XRF data are discussed, and a path for implementation of GA is outlined.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

2022 Results for Avian Monitoring of Inorganic Elements and Organic Chemical Concentrations in Passerine Eggs and Nestlings Collected from Technical Area 16 Burn Grounds, Technical Area 36 Minie, and Technical Area 39 Point 6 at Los Alamos National Laboratory

In 2022, nonviable avian eggs and one nestling were opportunistically collected at Los Alamos National Laboratory (LANL) near open detonation sites located at Technical Area (TA) 16 burn grounds, TA-36 Minie, and TA-39 Point 6. Samples were evaluated for inorganic elements (mostly metals) or per- and polyfluoroalkyl substances (PFAS). Three western bluebird (Sialia mexicana) egg samples were collected from TA-16 burn grounds. One deceased mountain bluebird (Sialia currucoides) nestling sample was collected from TA-36 Minie. One ash-throated flycatcher (Myiarchus cinerascens) egg sample was collected from TA-39 Point 6. Concentrations of inorganic elements (i.e., mostly metals) observed in this study were compared with the regional statistical reference level (RSRL), which is the upper-level bounds of background concentrations (mean + three standard deviations = 99% confidence interval). Several inorganic elements were not detected in avian eggs. All of the inorganic elements that were detected were below the RSRL and the lowest observable adverse effect level (LOAEL), when available. No PFAS compounds were detected in the mountain bluebird nestling sample collected from TA-36, and the majority of PFAS compounds were not detected in the western bluebird egg sample from TA-16. These data suggest that inorganic element and PFAS concentrations in eggs and nestlings are not of ecological concern. More data are needed to make a robust assessment and to evaluate trends over time.

59 BASIC BIOLOGICAL SCIENCES↗

Neutronic Effects of Missing Elements in the Annular Core Research Reactor (ACRR)

Neutronic effects of ACRR operating with a missing element are analyzed using MCNP. Results are focused on assessing the peaking factors associated with a single missing element. Intra-element power gradients are also assessed. A missing tri-element is evaluated as unique case. Auxiliary studies are provided that analyze the effects of cavity buckets, rod positions, and reflector elements. Neutronic effects of a nearby FREC-II (coupled and decoupled/tilted) are presented for select scenarios.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗