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At least 865 records · Page 48

Prediction of Adsorption Energies for Chemical Species on Metal Catalyst Surfaces Using Machine Learning

Computational catalyst screening has the potential to significantly accelerate heterogeneous catalyst discovery. Typically, this involves developing microkinetic reactor models that are based on parameters obtained from density functional theory and transition-state theory. To reduce the large computational cost involved in computing various adsorption and transition-state energies of all possible surface states on a large number of catalyst models, linear scaling relations for surface intermediates and transition states have been developed that only depend on a few, typically one or two descriptors, such as the carbon atom adsorption energy. As a result, only the descriptor values have to be computed for various active site models to generate volcano curves in activity or selectivity. Unfortunately, for more complex chemistries the predictability of linear scaling relations is unknown. Also, the selection of descriptors is essentially a trial and error process. Here, using a database of adsorption energies of the surface species involved in the decarboxylation and decarbonylation of propionic acid over eight monometalic transition-metal catalyst surfaces (Ni, Pt, Pd, Ru, Rh, Re, Cu, Ag), we tested if nonlinear machine learning (ML) models can outperform the linear scaling relations in prediction accuracy when predicting the adsorption energy for various species on a metal surface based on data from the rest of the metal surfaces. We found linear scaling relations to hold well for predictions across metals with a mean-absolute error of 0.12 eV, and ML methods being unable to outperform linear scaling relations when the training dataset contains a complete set of energies for all of the species on various metal surfaces. Only when the training dataset is incomplete, namely, contains a random subset of species’ energies for each metal, a currently unlikely scenario for catalyst screening, do kernel-based ML models significantly outperform linear scaling relations. We also found that simple coordinate-free species descriptors, such as bond counts, achieve as good results as sophisticated coordinate-based descriptors. Finally, we propose an approach for automatic discovery of appropriate metal descriptors using principal component analysis.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Symmetric Rydberg controlled- Z gates with adiabatic pulses

We analyze neutral atom Rydberg C Z gates based on adiabatic pulses applied symmetrically to both atoms. Analysis with smooth pulse shapes and Cs atom parameters predicts the gates can create Bell states with fidelity F > 0.999 using adiabatic rapid passage (ARP) pulses. With globally optimized adiabatic pulse shapes, in a two-photon excitation process, we generate Bell states with fidelity F = 0.997. The analysis fully accounts for spontaneous emission from intermediate and Rydberg states, including the Rydberg lifetime in a room temperature environment, but does not include errors arising from laser noise. In conclusion, the gate protocols do not require individual addressing and are shown to be robust against Doppler shifts due to atomic motion.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Differential Intensities of the 2ν2β-Transition in {sup 100}Mo

The energy distribution of one electron and angular correlation parameter of two electrons in the two-neutrino double beta-decay of {sup 100}Mo have been calculated with the consideration of the contribution of excited 1{sup +}-states of the intermediate nucleus {sup 100}Tc. Two variants of signs of individual particular excited state contributions to the 2ν2β-transition amplitude are considered. The data of the experiment on the charge-exchange reaction {sup 100}Mo({sup 3}He, t){sup 100}Tc are used in the calculations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Three-pion effects in $K^0-\bar{K}^0$ mixing

The rate of mixing between a neutral kaon and an anti-kaon ($K^0$-$\bar{K}^0$) is given, in part, by a long-range matrix element, defined with two insertions of the weak Hamiltonian separated by physical, Minkowski time evolution. For physical quark masses, the kaon mass lies above the two- and three-pion thresholds and, as a result, this long-range matrix element receives contributions from intermediate on-shell $2\pi$ and $3\pi$ states. These contributions cannot easily be captured in a finite Euclidean spacetime, meaning that such matrix elements are not directly accessible via lattice QCD. In this talk, we present a strategy for combining quantities that can be extracted in numerical lattice QCD calculations in order to reproduce the physical, infinite-volume long-range amplitude for $K^0-\bar{K}^0$. The key novelty relative to published work is that we fully include the effects of three-particle states that were previously neglected. The strategy is built on existing formalism for long-range matrix elements with two-particle intermediate states, together with the relativistic-field-theory finite-volume formalism for extracting three-hadron weak decays.

Jackura, Andrew↗

Rare semileptonic decays of B and B{sub c} mesons in the relativistic quark model

Rare semileptonic decays of B and B{sub c} mesons are investigated in the framework of the QCD-motivated relativistic quark model based on the quasipotential approach. Form factors parametrizing the matrix elements of the weak transitions between corresponding meson states are calculated with the complete account of the relativistic effects including contributions of intermediate negative energy states and relativistic transformations of the meson wave functions. The momentum transfer dependence of the form factors is reliably determined in the whole accessible kinematical range. On this basis the total and differential branching fractions of the B{yields}K{sup (*)}l{sup +}l{sup -}({nu}{nu}) and B{sub c}{yields}D{sub s}{sup (*)}l{sup +}l{sup -}({nu}{nu}), B{sub c}{yields}D{sup (*)}l{sup +}l{sup -}({nu}{nu}) decays as well as the longitudinal polarization fractions F{sub L} of the final vector meson and the muon forward-backward asymmetries A{sub FB} are calculated. Good agreement of the obtained results with the recent detailed experimental data on the B{yields}K{sup (*){mu}+{mu}-} decays from Belle and CDF is found. Predictions for the rare semileptonic decays of the B{sub c} mesons are given.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Barrier Heights for Diels–Alder Transition States Leading to Pentacyclic Adducts: A Benchmark Study of Crowded, Strained Transition States of Large Molecules

Theoretical characterization of reactions of complex molecules depends on providing consistent accuracy for the relative energies of intermediates and transition states. Here we employ the DLPNO-CCSD(T) method with core–valence correlation, large basis sets, and extrapolation to the CBS limit to provide benchmark values for Diels–Alder transition states leading to competitive strained pentacyclic adducts. We then used those benchmarks to test a diverse set of wave function and density functional methods for the absolute and relative barrier heights of these transition states. Our results show that only a few of the tested density functionals can predict the absolute barrier heights satisfactorily, although relative barrier heights are more accurate. The most accurate functionals tested are ωB97M-V, M11plus, ωB97X-V, PBE-D3(0), M11, and MN15 with MUDs from best estimates less than 3.0 kcal. Furthermore, these findings can guide selection of density functionals for future studies of crowded, strained transition states of large molecules.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Pathways for Ethanol Dehydrogenation and Dehydration Catalyzed by Ceria (111) and (100) Surfaces

We have performed computations to better understand how surface structure affects selectivity in dehydrogenation and dehydration reactions of alcohols. Ethanol reactions on the (111) and (100) ceria surfaces were studied starting from the dominant surface species, ethoxy. We used DFT (PBE+U) to explore reaction pathways leading to ethylene and acetaldehyde and calculated estimates of rate constants employing transition state theory. To assess pathway contributions, we carried out kinetic analysis. Our results show that intermediate and transition state structures are stabilized on the (100) surface compared to the (111) surface. Formation of acetaldehyde over ethylene is kinetically and thermodynamically preferred on both surfaces. Our results are consistent with temperature programmed surface reaction and steady-state experiments, where acetaldehyde was found as the main product and evidence was presented that ethylene formation at higher temperature originates from changes in adsorbate and surface structure.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A novel and facile decay path of Criegee intermediates by intramolecular insertion reactions via roaming transition states

We have discovered a new and highly competitive product channel in the unimolecular decay process for small Criegee intermediates, CH{sub 2}OO and anti/syn-CH{sub 3}C(H)OO, occurring by intramolecular insertion reactions via a roaming-like transition state (TS) based on quantum-chemical calculations. Our results show that in the decomposition of CH{sub 2}OO and anti-CH{sub 3}C(H)OO, the predominant paths directly produce cis-HC(O)OH and syn-CH{sub 3}C(O)OH acids with >110 kcal/mol exothermicities via loose roaming-like insertion TSs involving the terminal O atom and the neighboring C–H bonds. For syn-CH{sub 3}C(H)OO, the major decomposition channel occurs by abstraction of a H atom from the CH{sub 3} group by the terminal O atom producing CH{sub 2}C(H)O–OH. At 298 K, the intramolecular insertion process in CH{sub 2}OO was found to be 600 times faster than the commonly assumed ring-closing reaction.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Visualizing the Active Site Oxyanion Loop Transition Upon Ensitrelvir Binding and Transient Dimerization of SARS-CoV-2 Main Protease

N-terminal autoprocessing from its polyprotein precursor enables creating the mature-like stable dimer interface of SARS-CoV-2 main protease (MPro), concomitant with the active site oxyanion loop equilibrium transitioning to the active conformation (E*) and onset of catalytic activity. Here, through mutagenesis of critical interface residues and evaluating noncovalent inhibitor (ensitrelvir, ESV) facilitated dimerization through its binding to MPro, we demonstrate that residues extending from Ser1 through Glu14 are critical for dimerization. Combined mutations G11A, E290A and R298A (MPro™) restrict dimerization even upon binding of ESV to monomeric MPro™ with an inhibitor dissociation constant of 7.4 ± 1.6 µM. Contrasting the covalent inhibitor NMV or GC373 binding to monomeric MPro, ESV binding enabled capturing the transition of the oxyanion loop conformations in the absence of a reactive warhead and independent of dimerization. Characterization of complexes by room-temperature X-ray crystallography reveals ESV bound to the E* state of monomeric MPro as well as an intermediate approaching the inactive state (E). It appears that the E* to E equilibrium shift occurs initially from G138-F140 residues, leading to the unwinding of the loop and formation of the 3 10 -helix. Finally, we describe a transient dimer structure of the MPro precursor held together through interactions of residues A5-G11 with distinct states of the active sites, E and E*, likely representing an intermediate in the autoprocessing pathway.

59 BASIC BIOLOGICAL SCIENCES↗

RETURN OF THE KING: TIME-SERIES PHOTOMETRY OF FO AQUARII’S INITIAL RECOVERY FROM ITS UNPRECEDENTED 2016 LOW STATE

In 2016 May, the intermediate polar FO Aqr was detected in a low state for the first time in its observational history. We report time-resolved photometry of the system during its initial recovery from this faint state. Our data, which includes high-speed photometry with cadences of just 2 s, show the existence of very strong periodicities at 22.5 and 11.26 minutes, equivalent to the spin–orbit beat frequency and twice its value, respectively. A pulse at the spin frequency is also present but at a much lower amplitude than is normally observed in the bright state. By comparing our power spectra with theoretical models, we infer that a substantial amount of accretion was stream-fed during our observations, in contrast to the disk-fed accretion that dominates the bright state. In addition, we find that FO Aqr’s rate of recovery has been unusually slow in comparison to rates of recovery seen in other magnetic cataclysmic variables, with an e -folding time of 115 ± 7 days. The recovery also shows irregular variations in the median brightness of as much as 0.2 mag over a 10-day span. Finally, we show that the arrival times of the spin pulses are dependent upon the system’s overall brightness.

79 ASTRONOMY AND ASTROPHYSICS↗

Ab initio reaction pathways for photodissociation and isomerization of nitromethane on four singlet potential energy surfaces with three roaming paths

Photodissociation pathways of nitromethane following π → π{sup *} electronic excitation are reported. The potential energy surfaces for four lowest singlet states are explored, and structures of many intermediates, dissociation limits, transition states, and minimum energy conical intersections were determined using the automated searching algorism called the global reaction route mapping strategy. Geometries are finally optimized at CASSCF(14e,11o) level and energies are computed at CAS(14o,11e)PT2 level. The calculated preferable pathways and important products qualitatively explain experimental observations. The major photodissociation product CH{sub 3} and NO{sub 2} ({sup 2}B{sub 2}) is formed by direct dissociation from the S{sub 1} state. Important pathways involving S{sub 1} and S{sub 0} states for production of various dissociation products CH{sub 3}NO + O ({sup 1}D), CH{sub 3}O(X{sup 2}E) + NO (X{sup 2}Π), CH{sub 2}NO + OH, and CH{sub 2}O + HNO, as well as various isomerization pathways have been identified. Three roaming processes also have been identified: the O atom roaming in O dissociation from CH{sub 3}NO{sub 2}, the OH radical roaming in OH dissociation from CH{sub 2}N(O)(OH), and the NO roaming in NO dissociation from CH{sub 3}ONO.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

ACCRETION DISK DYNAMO AS THE TRIGGER FOR X-RAY BINARY STATE TRANSITIONS

Magnetohydrodynamic accretion disk simulations suggest that much of the energy liberated by the magnetorotational instability (MRI) can be channeled into large-scale toroidal magnetic fields through dynamo action. Under certain conditions, this field can dominate over gas and radiation pressure in providing vertical support against gravity, even close to the midplane. Using a simple model for the creation of this field, its buoyant rise, and its coupling to the gas, we show how disks could be driven into this magnetically dominated state and deduce the resulting vertical pressure and density profiles. Applying an established criterion for MRI to operate in the presence of a toroidal field, we show that magnetically supported disks can have two distinct MRI-active regions, separated by a “dead zone” where local MRI is suppressed, but where magnetic energy continues to flow upward from the dynamo region below. We suggest that the relative strengths of the MRI zones, and the local poloidal flux, determine the spectral states of X-ray binaries. Specifically, “intermediate” and “hard” accretion states occur when MRI is triggered in the hot, upper zone of the corona, while disks in “soft” states do not develop the upper MRI zone. We discuss the conditions under which various transitions should take place and speculate on the relationship of dynamo activity to the various types of quasi-periodic oscillations that sometimes appear in the hard spectral components. The model also explains why luminous accretion disks in the “soft” state show no signs of the thermal/viscous instability predicted by standard α-models.

79 ASTRONOMY AND ASTROPHYSICS↗

Charge stripes in the two-orbital Hubbard model for iron pnictides

The two-orbital Hubbard model for the pnictides is studied numerically using the real-space Hartree Fock approximation on finite clusters. Upon electron doping, states with a nonuniform distribution of charge are stabilized. The observed patterns correspond to charge stripes oriented perpendicular to the direction of the spin stripes of the undoped magnetic ground state. While these charge-striped states are robust when the undoped state has a Hubbard gap, their existence when the intermediate-coupling magnetic metallic state of pnictides is doped was also observed for particular model parameters. Results for hole doping and implications for recent experiments that reported electronic nematic states and spin incommensurability are also briefly discussed.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Solid-state graphene formation via a nickel carbide intermediate phase [Nickel carbide (Ni 3 C) as an intermediate phase for graphene formation]

Direct formation of graphene with controlled number of graphitic layers on dielectric surfaces is highly desired for practical applications. Despite significant progress achieved in understanding the formation of graphene on metallic surfaces through chemical vapor deposition (CVD) of hydrocarbons, very limited research is available elucidating the graphene formation process via rapid thermal processing (RTP) of solid-state amorphous carbon, through which graphene is formed directly on dielectric surfaces accompanied by autonomous nickel evaporation. It is suggested that a metastable hexagonal nickel carbide (Ni 3 C) intermediate phase plays a critical role in transforming amorphous carbon to 2D crystalline graphene and contributing to the autonomous Ni evaporation. Temperature resolved carbon and nickel evolution in the RTP process is investigated using Auger electron spectroscopic (AES) depth profiling and glancing-angle X-ray diffraction (GAXRD). Formation, migration and decomposition of the hexagonal Ni 3 C are confirmed to be responsible for the formation of graphene and the evaporation of Ni at 1100 °C. The Ni 3 C-assisted graphene formation mechanism expands the understanding of Ni-catalyzed graphene formation, and provides insightful guidance for controlled growth of graphene through the solid-state transformation process.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Investigation of phase evolution of CaCu{sub 3}Ti{sub 4}O{sub 12} (CCTO) by in situ synchrotron high-temperature powder diffraction

In situ synchrotron X-ray powder diffraction was used to study the high-temperature phase evolution of CaCu{sub 3}Ti{sub 4}O{sub 12} (CCTO) precursors prepared via solid-state and sol–gel methods. After the precursors are heated to 1225 °C, the CCTO phase is the main phase observed in the calcined powder, with the presence of some minor impurities. Comparing the two precursors, we found that the onset temperature for the CCTO phase formation is 800 °C in the sol–gel precursor, lower than that in the solid-state precursor (875 °C). Intermediate phases were only observed in the sol–gel precursor. Both precursors are able to be calcined to sub-micrometric sized powders. Based on the synchrotron data along with differential scanning calorimetry (DSC) and thermal gravimetric analysis (TGA), the phase formation sequence and mechanism during calcination are proposed in this study. -- Graphical abstract: The in situ synchrotron HT-XRD patterns of CCTO sol–gel and solid-state precursor. Highlights: • Phase formation sequence/mechanism in two CCTO precursors has been established. • Formation temperature of CCTO via sol–gel method is lower than solid-state method. • Intermediate phases are only observed in the sol–gel precursor. • Both precursors are able to be calcined into sub-micrometric sized powders.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Increasing water use efficiency along the C3 to C4 evolutionary pathway: a stomatal optimization perspective

C4 photosynthesis evolved independently numerous times, probably in response to declining atmospheric CO2 concentrations, but also to high temperatures and aridity, which enhance water losses through transpiration. Here, the environmental factors controlling stomatal behaviour of leaf-level carbon and water exchange were examined across the evolutionary continuum from C3 to C4 photosynthesis at current (400 μmol mol–1) and low (280 μmol mol–1) atmospheric CO2 conditions. To this aim, a stomatal optimization model was further developed to describe the evolutionary continuum from C3 to C4 species within a unified framework. Data on C3, three categories of C3–C4 intermediates, and C4 Flaveria species were used to parameterize the stomatal model, including parameters for the marginal water use efficiency and the efficiency of the CO2-concentrating mechanism (or C4 pump); these two parameters are interpreted as traits reflecting the stomatal and photosynthetic adjustments during the C3 to C4 transformation. Neither the marginal water use efficiency nor the C4 pump strength changed significantly from C3 to early C3–C4 intermediate stages, but both traits significantly increased between early C3–C4 intermediates and the C4-like intermediates with an operational C4 cycle. At low CO2, net photosynthetic rates showed continuous increases from a C3 state, across the intermediates and towards C4 photosynthesis, but only C4-like intermediates and C4 species (with an operational C4 cycle) had higher water use efficiencies than C3 Flaveria. The results demonstrate that both the marginal water use efficiency and the C4 pump strength increase in C4 Flaveria to improve their photosynthesis and water use efficiency compared with C3 species. These findings emphasize that the advantage of the early intermediate stages is predominantly carbon based, not water related.

54 ENVIRONMENTAL SCIENCES↗

Hydrogenation and C-S bond activation pathways in thiophene and tetrahydrothiophene reactions on sulfur-passivated surfaces of Ru, Pt, and Re nanoparticles

Thiophene-H2 reactions proceed via sulfur removal and hydrogenation routes on dispersed metal nanoparticles that become decorated by refractory S-adlayers during catalysis. The identity and kinetic relevance of the required elementary steps are described here based on rates measured at S-chemical potentials set by H2S/H2 ratios similar to those prevalent during practical catalysis on Re, ReSx, Ru, and Pt catalysts. Free energies for S adatom formation (from H2S decomposition and H2 evolution) are strongly exothermic (< -50 kJ mol-1 on Pt(111) and < -150 kJ mol-1 on Re and Ru(0001)), but strong repulsions between S adatoms cause adsorption free energies to increase significantly with coverage on all three surfaces, preventing complete monolayer formation. These adlayers, composed of unreactive S-atoms (S') that cover 1/3–2/3 ML leave residual interstitial spaces (*) that bind S-atoms (S*), intermediates, and transition states reversibly, as required for catalytic turnovers. The number and binding properties of these interstices depend on the identity and chemical state of the nanoparticle bulk phase, which influences S'-binding and coverages and cause large differences in direct desulfurization and hydrogenation turnover rates (per exposed metal atom) on dispersed Re, ReSx, Ru, and Pt. The identity and kinetic relevance of elementary steps for desulfurization (to C4¬ hydrocarbons) and hydrogenation (to tetrahydrothiophene; THT) are similar among these catalysts; they involve the kinetically-relevant formation of a thiophene-derived intermediate (monohydrothiophene on Re and ReSx; dihydrothiophene on Ru and Pt) that either cleaves its C-S bond or “over-hydrogenates” to THT in one surface sojourn. THT then undergoes C-S bond cleavage in secondary reactions that correct such over-hydrogenation to form the more unsaturated species that cleave C-S bonds. THT/C4 product ratios are insensitive to H2S/H2 ratios and thiophene pressure, even though active interstitial spaces are covered by kinetically-detectable coverages of S* and thiophene; therefore, primary and secondary reactions must involve the same active surfaces. The observed increase in THT/C4 ratios with H2 pressure shows that THT formation transition states involve a larger number of H-atoms than for C-S cleavage. The requirement for bound species with intermediate unsaturation (between THT and thiophene) for C-S bond cleavage is reminiscent of the H-shuttling required in C-C and C-O hydrogenolysis, reactions that involve the partial dehydrogenation of alkanes and alkanols, respectively, to weaken such bonds and to increase the formation entropy of the relevant transition states via the evolution of H2(g). These mechanistic details challenge prevalent paradigms about different site requirements for hydrogenation and desulfurization pathways and about how metal-sulfur bond energies act as descriptors of reactivity; in fact, such binding energies merely act to define the refractory S-adlayers that enable the formation of weakly-binding interstices that reversibly bind intermediates and transition states, thus allowing catalytic turnovers.

Yik, Edwin↗

Scaling Relations in Homogeneous Catalysis: Analyzing the Buchwald–Hartwig Amination Reaction

Scaling relations are widely used to study surface reactions. However, the exploration of its utility in homogeneous catalysis is currently far less reported. In this work, we have investigated the transferability of the concept of scaling relations to a homogeneous catalysis reaction known as the Buchwald–Hartwig amination (BHA) reaction. The reaction of PhBr with MeNH 2 using 37 different Pd–L complexes (L = phosphine ligand) is studied, and scaling relations are established among the reaction intermediates and transition states. Using the scaling relations, we construct volcano plots, which is the plot of the log(rate) vs the descriptor intermediate energy. The insights from the volcano plots agree well with the experimental trends from the literature and give direction toward better catalyst design.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗