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At least 847 records · Page 47

Multiview Incomplete Knowledge Graph Integration with application to cross-institutional EHR data harmonization

Objective: The growing availability of electronic health records (EHR) data opens opportunities for integrative analysis of multi-institutional EHR to produce generalizable knowledge. A key barrier to such integrative analyses is the lack of semantic interoperability across different institutions due to coding differences. We propose a Multiview Incomplete Knowledge Graph Integration (MIKGI) algorithm to integrate information from multiple sources with partially overlapping EHR concept codes to enable translations between healthcare systems. Methods: The MIKGI algorithm combines knowledge graph information from (i) embeddings trained from the co-occurrence patterns of medical codes within each EHR system and (ii) semantic embeddings of the textual strings of all medical codes obtained from the Self-Aligning Pretrained BERT (SAPBERT) algorithm. Due to the heterogeneity in the coding across healthcare systems, each EHR source provides partial coverage of the available codes. MIKGI synthesizes the incomplete knowledge graphs derived from these multi-source embeddings by minimizing a spherical loss function that combines the pairwise directional similarities of embeddings computed from all available sources. MIKGI outputs harmonized semantic embedding vectors for all EHR codes, which improves the quality of the embeddings and enables direct assessment of both similarity and relatedness between any pair of codes from multiple healthcare systems. Results: With EHR co-occurrence data from Veteran Affairs (VA) healthcare and Mass General Brigham (MGB), MIKGI algorithm produces high quality embeddings for a variety of downstream tasks including detecting known similar or related entity pairs and mapping VA local codes to the relevant EHR codes used at MGB. Based on the cosine similarity of the MIKGI trained embeddings, the AUC was 0.918 for detecting similar entity pairs and 0.809 for detecting related pairs. For cross-institutional medical code mapping, the top 1 and top 5 accuracy were 91.0% and 97.5% when mapping medication codes at VA to RxNorm medication codes at MGB; 59.1% and 75.8% when mapping VA local laboratory codes to LOINC hierarchy. When trained with 500 labels, the lab code mapping attained top 1 and 5 accuracy at 77.7% and 87.9%. MIKGI also attained best performance in selecting VA local lab codes for desired laboratory tests and COVID-19 related features for COVID EHR studies. Compared to existing methods, MIKGI attained the most robust performance with accuracy the highest or near the highest across all tasks. Conclusions: The proposed MIKGI algorithm can effectively integrate incomplete summary data from biomedical text and EHR data to generate harmonized embeddings for EHR codes for knowledge graph modeling and cross-institutional translation of EHR codes.

Zhou, Doudou↗

A Theoretical Analysis of the Effects of Fuel Motion on Airplane Dynamics

The general equations of motion for an airplane with a number of spherical fuel tanks are derived. The motion of the fuel is approximated by the motion of solid pendulums. The same type of derivation and equations are shown to apply to any type of fuel tank where the motion of the fuel may be represented in terms of undamped harmonic oscillators. Motions are calculated for a present-day high-speed airplane and a free-flying airplane model with two spherical tanks in the symmetry plane.

Schy, Albert A↗

Coupling into and scattering from cylindrical structures covered periodically with metallic patches

Circular cylindrical structures covered periodically with metallic patches are considered. After an analogy to planar periodic surfaces is shown, formulations are presented for calculating induced currents on the curved surface. The equations are solved and results calculated for the specific case of periodic strips on the cylindrical surface. For a cylindrical structure a two-dimensional periodicity exists, as in a planar structure, while a spherical structure allows only a rotational periodicity. When the cylindrical structure is excited by the characteristic harmonic of the system, the spectral response of the transmitted field exhibits resonances that depend on the surface periodicity, as is known for planar structures. Since the cylindrical structure contains finite closed regions, the effects of resonances internal to the structure are seen and give additional information as compared to planar structures.

Cwik, Tom↗

Interpretation of high-harmonic fast-wave propagation in the scrape-off layer of NSTX-U as a geometrically bounded-waveguide mode

This paper revisits the onset of high-harmonic fast-wave (HHFW) propagation in the scrape-off layer (SOL) plasma of the NSTX/NSTX-U spherical tokamak, motivated by past HHFW heating and current drive experiments and modelling. Previously, the fast-wave propagation in the SOL was correlated with the opening (suppression) of the fast-wave right-hand cutoff layer in front of the antenna. In this work, the SOL propagation is interpreted as a geometric waveguide mode guided by the SOL geometry, whose radial width can be comparable to the wave’s perpendicular wavelength in the HHFW regime. A two-dimensional circular model is first employed using full-wave solvers to characterise the poloidal eigenmode structures and to clarify their relationship to annulus resonance. By progressively adding a tokamak-like magnetic-field configuration, starting from a uniform axial field, the effects of magnetic-field gradients and pitch on the SOL waveguide mode are characterised. The poloidal mode numbers supported by the SOL plasma agree well with analytic estimates, indicating that an anisotropic plasma in a bounded geometry selectively supports and amplifies the resonant poloidal mode number. Additionally, two-dimensional axisymmetric NSTX-U simulations demonstrate that the SOL eigenmode features identified in the circular model persist in the experimentally relevant configurations. A control approach based on lengthening the wave perpendicular wavelength relative to the SOL width, including a higher magnetic (B)-field operation, is discussed. The analysis here shows the key role of a bounded geometry in interpreting HHFW eigenmode coupling and propagation in the NSTX-U SOL plasma.

plasma heating↗

Observation of second harmonic electron cyclotron resonance heating and current-drive transition during non-inductive plasma start-up experiment in QUEST

Here, noninductive plasma current start-up using 2nd harmonic electron cyclotron resonance heating (ECRH) with oblique radio frequency (RF) injection is demonstrated in a Q-shu University experiment with steady-state spherical tokamak. A strong transition was observed in the heating and plasma current ramp-up. The initial bulk electron heating regime exhibits T ebulk ~ 140 eV and no hard x-ray (HXR) emission with a low I p of ~15 kA; it abruptly transitions to a regime that exhibits a low T ebulk of ~10 eV and a strong HXR emission with a high I p of ~50 kA. This behavior is distinctly different from that observed in previous fundamental ECRH experiments. The mechanism of the heating and current drive transition are investigated considering wave power absorption and plasma power balance. The results indicate that the transition is caused by the favorable heating of tail electrons where the RF power absorption at the 2nd harmonic increases nearly linearly with T etail , while the power transfer from the tail electrons to the bulk electrons decreases with 1/T etail 0.5 . This causes a rapid transition to a state with high T etail while reducing T ebulk towards colder ion temperature. The understanding of the transition mechanism helps to consider plasma current start-up using 2nd harmonic ECRH for tokamak reactors such as JT-60 SA and ITER.

QUEST↗

Analytical expression of a finite, long, conical canted-cosine-theta coil for particle collider interaction regions

Magnets in the accelerator interaction region (IR) present significant challenges because of high field requirements and limited available space. Conical-shaped magnets offer advantages in these environments by allowing closer placement to the interaction point while maintaining clearance from synchrotron radiation. Interestingly, numerical studies have shown that conical canted-cosine-theta (CCT) designs produce a constant field distribution along the axial direction in the IR quadrupoles for the Electron-Ion Collider (EIC) at Brookhaven National Laboratory. However, the field harmonics generated by conical CCT windings are not yet fully understood. This paper presents an analytical approach to describe the magnetic field produced by a conical surface current and proposes a method for designing conical CCT magnets for accelerator applications. First, we begin with a surface current sheet having a general cosine-theta distribution in spherical coordinates and solve the vector potential using the Green’s function. The magnetic fields generated by the conical current sheet are expressed using associated Legendre polynomials. These results are then related to circular field harmonics and integral field harmonics for designing a coil that produces a pure multipole field. Next, a single layer of the conical CCT winding path is produced based on the cosine-theta current distribution. Finally, the magnetic field quality of dipole and quadrupole conical CCT coils with multiple layers is verified using the Biot-Savart law.

Yang, Ye↗

Theory and operation of a three-gate time-of-flight velocity analyzer

Theoretical considerations and test results are presented for a new-type velocity analyzer for incident fast neutral particles, positive ions, and negative ions. Velocity analysis is carried out by means of a pulsed, three-gate time-of-flight (TOF) technique capable of eliminating alias velocities (harmonics) to sixth order. In addition the design and operation are presented of a four-element ion lens system, with small spherical and chromatic aberrations, suitable for interfacing a large-diameter ion beam from the TOF section with a subsequent mass analyzer.

Martus, K. E.↗

Nearly spherical constant-power detonation waves as driven by focused radiation.

Analysis is made of the flow within a 3-D spark created in a gas absorbing energy from a steady conical beam of radiation (typically obtained from an array of lasers) with nearly spherical symmetry. First-order deviations are represented by series of Legendre polynomials of the polar angle. Self-similarity is demonstrated. For harmonics 1 to 5 radial profiles of velocity components, density and pressure are presented. The linear perturbation scheme exhibits a singularity at the focus. This reflects the existence of a 'forbidden zone', as is shown by a study of the full non-linear flow equations.

George, Y. H.↗

Constrained sloshing of liquid mercury in a flexible spherical tank

The mercury propellant tank system developed for use with solar electric propulsion was studied to analytically determine the resonant frequencies of the tank system and compare them with the anticipated control natural frequency of the spacecraft. The system consisted of a stainless steel spherical shell and a hemispherical elastometric diaphragm. The major analytical tool used was the NASTRAN program. Six mathematical models were developed. Resonant frequencies for six harmonics were obtained for each of the six models considered. The results show that the lowest resonant frequency for the tank system is about an order of magnitude greater than the anticipated control frequency of the spacecraft.

Lestingi, J.↗

Nonlinear simulations of GAEs in NSTX-U

A set of nonlinear simulations has been performed in order to study the nonlinear evolution of unstable global Alfvén eigenmodes in the National Spherical Torus Experiment-Upgrade (NSTX-U). Results of the single toroidal mode number, n, simulations are compared with a full nonlinear simulation (all toroidal harmonics included). In single-n simulations, the conservation of two integrals of motion of a particle in a cyclotron resonance with a monochromatic wave is demonstrated, resulting in a one-dimensional evolution of the particle distribution in (E,μ,pϕ) phase-space. Nonlinear simulations (both single-n and full nonlinear) show a significant redistribution of the resonant fast ions, especially in the pitch parameter. Thus, the changes in the resonant particle's parallel and perpendicular energies can be several times larger than the total particle energy change, with only a small fraction transferring into the excitation of the mode itself. This implies that even a relatively small amplitude mode can significantly modify the beam distribution in the resonant region. For the NSTX-U case considered, the single-n simulation results are close to full nonlinear simulation only for the most unstable mode, in which case the saturation amplitudes and changes in the fast ion distribution are comparable. In contrast, peak amplitudes of subdominant modes in all-n simulations are smaller by a factor of 3–10 compared to single-n runs due to the flattening of the beam ion distribution by the fastest growing mode.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

LRAT: Lightning Radiative Transfer

In this report, we extend to cloud physics the work done for single and multiple scattering of electromagnetic waves. We consider the scattering of light, visible or infrared, by a spherical cloud represented by a statistically homogeneous ensemble of configurations of N identical spherical water droplets whose centers are uniformly distributed in its volume V. The ensemble is specified by the average number rho of scatterers in unit volume and by rho f(R) with f(R) as the distribution function for separations R of pairs. The incident light, vector-phi(sub 0) a plane electromagnetic wave with harmonic time dependence, is from outside the cloud. The propagation parameter kappa(sub 0) and the index of refraction eta(sub 0) determine physically the medium outside the distribution of scatterers. We solve the interior problem separately to obtain the bulk parameters for the scatterer equivalent to the ensemble of spherical droplets. With the interior solution or the equivalent medium approach, the multiple scattering problem is reduced to that of an equivalent single scatterer excited from outside illumination. A dispersion relation which determines the bulk propagation parameter K and the bulk index of refraction eta of the cloud is given in terms of the vector equivalent scattering amplitude vector-G and the dyadic scattering amplitude tilde-g of the single object in isolation. Based on this transfer model we will have the ability to consider clouds composed of inhomogeneous distribution of water and/or ice particles and we will be able to take into account particle size distributions within the cloud. We will also be able to study the effects of cloud composition (i.e., particle shape, size, composition, orientation, location) on the polarization of the single or the multiple scattered waves. Finally, this study will provide a new starting point for studying the problem of lightning radiative transfer.

Phanord, Dieudonne D.↗

Reducing the error of geoid undulation computations by modifying Stokes' function

The truncation theory as it pertains to the calculation of geoid undulations based on Stokes' integral, but from limited gravity data, is reexamined. Specifically, the improved procedures of Molodenskii et al. are shown through numerical investigations to yield substantially smaller errors than the conventional method that is often applied in practice. In this improved method, as well as in a simpler alternative to the conventional approach, the Stokes' kernel is suitably modified in order to accelerate the rate of convergence of the error series. These modified methods, however, effect a reduction in the error only if a set of low-degree potential harmonic coefficients is utilized in the computation. Consider, for example, the situation in which gravity anomalies are given in a cap of radius 10 deg and the GEM 9 (20,20) potential field is used. Then, typically, the error in the computed undulation (aside from the spherical approximation and errors in the gravity anomaly data) according to the conventional truncation theory is 1.09 m; with Meissl's modification it reduces to 0.41m, while Molodenskii's improved method gives 0.45 m. A further alteration of Molodenskii's method is developed and yields an RMS error of 0.33 m. These values reflect the effect of the truncation, as well as the errors in the GEM 9 harmonic coefficients. The considerable improvement, suggested by these results, of the modified methods over the conventional procedure is verified with actual gravity anomaly data in two oceanic regions, where the GEOS-3 altimeter geoid serves as the basis for comparison. The optimal method of truncation, investigated by Colombo, is extremely ill-conditioned. It is shown that with no corresponding regularization, this procedure is inapplicable.

Jekeli, C.↗

Parametric raytracing modeling for NSTX-U scenario development with high harmonic fast waves and neutral beam injection

High harmonic fast waves (HHFW) are a versatile heating and current drive tool for scenario development. Extensive modeling scans were performed to find optimal parameters for different uses of HHFW in National Spherical Tokamak Experiment (NSTX-U). Scans of plasma density, temperature, magnetic field, and antenna phasing were performed both with and without neutral beam injection. For speed of calculation, the ray-tracing code GENRAY coupled to the quasilinear Fokker–Planck code CQL3D was used. CQL3D allows for a more accurate description of the fast ion population, as well as for quasilinear effects such as HHFW-induced modifications of the distribution function. Best current drive results are obtained at elevated electron temperatures and with the lowest k φ phasing. Adding neutral beams however typically strongly reduces the HHFW current drive efficiency at the low density cases due to HHFW absorption on beam ions. Results of this parametric study will feed into scenario development and predict-first whole-shot modeling of NSTX-U discharges.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Geoid anomalies in a dynamic earth

Potential and surface deformation Love numbers for internal loading have been calculated in order to obtain a dynamically consistent relationship between the geoid and the earth's response to internal buoyancy forces. These quantities depend on the depth and harmonic degree of loading, and can be integrated as Green functions to obtain the dynamic response due to an arbitrary distribution of internal density contrasts. Constructing a series of spherically symmetric, self-gravitating flow models for a variety of radial Newtonian viscosity variations and flow configurations, and calculating relaxation times for spherically symmetric viscous earth models, it is demonstrated that boundary deformation due to internal loading reaches its equilibrium value on the same time scale as postglacial rebound; this is much less time than the time scale for significant change in the convective flow pattern.

Richards, M. A.↗

Changes in the earth's rotation and low-degree gravitational field induced by earthquakes

Analytical formulas based on the normal-mode theory are used together with a spherically symmetric earth model and the centroid-moment tensor solutions for earthquake sources to compute the earthquake-induced changes in the earth's rotation and low-degree harmonics of the gravitational field for the period 1977-1985. Spectral and statistical analyses are conducted on these changes. It is found that the earthquake-induced changes are two orders of magnitude smaller than those observed; most of these changes show strong evidence of nonrandomness either in their polarity or in their directions.

Chao, B. Fong↗

On the polar moment of inertia of a compressible body

The rotational dynamics of a body are governed by the values of its principle moments of inertia. These quantities are not directly observable, but they are related to the harmonic coefficients of the external gravity field and to the density distribution within the body, both of which can be inferred from appropriate observations. It is shown that, for the particular case of a spherical planet whose density varies as a power of the radial distance, the principal moment of inertia has an elegantly simple form. Application of this simplified case to the Jovian planets suggests that the density profiles outside the central core are approximately linear, with the apparent exception of Neptune.

Mulholland, J. D.↗

Synthesis of TiO{sub 2} nanoparticles decorated with gold nanoclusters using pulsed laser ablation in liquid

Amorphous spherical titanium dioxide (TiO{sub 2}) nanoparticles, decorated gold nanoparticles, are shown to be formed under irradiation of commercial TiO{sub 2} nanopowders dispersed in aqueous solution of hydrogen tetrachloroaurate (HAuCl{sub 4}) by second-harmonic nanosecond pulses of an Nd : YAG laser. It is found that these hybrid nanostructures are formed during laser-induced remelting of the initial nanoparticles, stimulated by gold nanoclusters (providing more efficient absorption of visible laser radiation by titanium dioxide) recovered on their surface. The morphology and chemical composition of the newly formed hybrid nanomaterials are investigated in detail by electron microscopy, Raman spectroscopy, and energy-dispersive analysis. It is shown that the average size and number of gold nanoparticles recovered on the TiO{sub 2} surface can be controlled by varying the concentration ratio of the initial nanomaterial and HAuCl{sub 4}. A spectroscopic analysis of light scattering by single hybrid nanoparticles and the results of numerical calculation of the structure of electromagnetic fields near their surface indicate good prospects of these hybrid nanomaterials for various applications in modern optics, optoelectronics, and nanophotonics; for example, for designing chemo- and biosensor platforms and new-generation solar cells. (nanoparticles)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗