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At least 847 records · Page 47

Injury and mortality of two Mekong River species exposed to turbulent shear forces

Global hydropower development is one solution proposed to address the increase in energy needs. However, hydropower-related impacts on riverine ecological systems are not well understood. The Mekong River Basin (MRB) is one of the world’s largest waterways and is presently experiencing significant hydropower expansion. It is also one of the most biodiverse rivers; serving as home to many species that are blocked or hindered by the development of dams. One source of injury and mortality for downstream moving fishes is passage through the turbine environment where fishes may be exposed to several physical stressors (e.g. shear forces, rapid decompression, blade strike and turbulence). The current study sought to understand the susceptibility of blue gourami ( Trichopodus trichopterus ) and iridescent shark ( Pangasianodon hypophthalmus ) to shear forces. Fishes were exposed to an underwater jet with velocities up to 21.3 m s –1 (equating to strain rates of up to 1185 s –1 ) and were assessed for behavioural effects, injuries and mortality. Overall, it was determined that both species were susceptible to the shear forces applied in this study and the effects were more pronounced at higher strain rates. Gouramis were more susceptible than sharks. Furthermore to minimise impacts on these species, shear forces within turbines should not exceed critical limits.

60 APPLIED LIFE SCIENCES↗

Multi-depth suspended sediment estimation using high-resolution remote-sensing UAV in Maumee River, Ohio

Satellite remote-sensing has been widely used to map suspended sediment concentration (SSC) in waterbodies. Current development of the unmanned aerial vehicle (UAV) technology allows mapping of SSC at finer spatial resolution providing high flexibility in terms of cost and acquisition time. However, the technology is immature and transfer of empirical algorithms from existing remote-sensing technologies to UAV still has to be explored. Here, this study uses the MicaSense Sequoia sensor with four bands (green, red, red edge, and near-infrared [NIR]) mounted on-board a fixed-wing UAV to map SSC within the Maumee River in Ohio, USA, at multiple depth intervals (15, 61, 91, and 182 cm). The simple linear and stepwise regression models show the advantage of multiple bands and band ratios over single bands in mapping SSC. The findings show a limited performance of the Sequoia sensor when compared to field spectroradiometer measurements. In all cases but one, the adjusted coefficient of determination (R$2\atop{adj}$) values is lower for the UAV data. The regression equations become similar at and below a depth of 0–61 cm, and R$2\atop{adj}$ become constant at and below a depth of 0–91 cm. While the spectroradiometer-related equations are sensitive to a wider spectral range (from green at the surface to NIR wavelength at 182 cm depth), the UAV-related equations are insensitive to green spectrum and they include a narrower spectral range (from red to NIR) over all depth increments. Field spectroradiometer measurements exhibit a strong relationship with cumulative SSC at 182 cm depth (0–182 cm) (R$2\atop{adj}$ = 0.71) whereas UAV reflectance data show the best relationship with SSC at 91 cm (0–91 cm) (R$2\atop{adj}$ = 0.56) suggesting that ~91 cm may be an optimal depth for UAV under given conditions. In conclusion, the results show that UAVs can be a practical but somewhat limited tool to monitor SSC in small- to medium-sized rivers.

47 OTHER INSTRUMENTATION↗

Mercury in aqueous tank waste at the Savannah River Site: Facts, forms, and impacts

Over the past two years, there has been an intense effort to understand the chemistry of mercury across the Savannah River Site’s high-level liquid waste system to determine the impacts of various mercury species. This effort started after high concentrations of mercury were measured in the leachates from a toxicity characteristic leaching procedure (TCLP) test on the low-level cementitious waste form produced in the Savannah River Saltstone facility. Speciation showed the dominant form of leached mercury to be the methylmercury cation. Neither the source of the methylmercury nor its concentration in the Saltstone feed was well established at the time of the testing. Finally, this assessment of mercury was necessary to inform points in the process operations that may be subject to new separation technologies for the removal of mercury.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Spatial consistency of Chinook salmon redd distribution within and among years in the Cowlitz River, Washington

We investigated the spawning patterns of Chinook salmon Oncorhynchus tshawytscha on the lower Cowlitz River, Washington (USA) using a unique set of fine- and coarse-scale 35 temporal and spatial data collected during bi-weekly aerial surveys conducted in 1991-2009 (500 m to 28 km resolution) and 2008-2009 (100-500 m resolution). Redd locations were mapped from a helicopter during 2008 and 2009 with a hand-held global positioning system (GPS) synchronized with in-flight audio recordings. We examined spatial patterns of Chinook salmon redd reoccupation among and within years in relation to segment-scale geomorphic features. Chinook salmon spawned in the same sections each year with little variation among years. On a coarse scale, five years (1993, 1998, 2000, 2002, and 2009) were compared for reoccupation. Redd locations were highly correlated among years resulting in a minimum correlation coefficient of 0.90 (adjusted P = 0.002). Comparisons on a fine scale (500 m) between 2008 and 2009 also revealed a high degree of consistency among redd locations (P < 0.001). On a finer temporal scale, we observed that salmon spawned in the same sections during the first and last week (2008: P < 0.02; and 2009: P < 0.001). Redds were clustered in both 2008 and 2009 (P < 0.001). Regression analysis with a generalized linear model at the 500-m scale indicated that river kilometer and channel bifurcation were positively associated with redd density, whereas sinuosity was negatively associated with redd density. Collecting data on specific redd locations with a GPS during aerial surveys was logistically feasible and cost effective and greatly enhanced the spatial precision of Chinook salmon spawning surveys.

habitat management↗

Stock-Specific Size and Timing at Ocean Entry of Columbia River Juvenile Chinook Salmon and Steelhead: Implications for Early Ocean Growth

Abstract Juvenile salmon transitioning from freshwater to marine environments experience high variation in growth and survival, yet the specific causes of this variation are poorly understood. Size at and timing of ocean entry may contribute to this variation because they influence both the availability of prey and vulnerability to predators. To explore this issue, we used stock assignments based on genetic stock identification and internal tags to document the stock-specific size and timing of juvenile hatchery and presumed wild Columbia River Chinook Salmon Oncorhynchus tshawytscha and steelhead O. mykiss at ocean entry during 2007–2011. We found that juvenile salmon and steelhead had consistent stock-specific capture dates, with lower-river stocks typically having earlier timing than those originating farther upstream. Mean size also varied among stocks and was related to hatchery practices. Hatchery yearling Chinook Salmon and steelhead were consistently larger than wild fish from the same stocks, although timing in the estuary was similar. In contrast, hatchery subyearling Chinook Salmon were of similar size to wild fish but entered the ocean up to a month earlier. We evaluated the potential importance of these traits on early marine growth by estimating stock-specific growth rates for Chinook Salmon caught in estuarine and ocean habitats. Growth rates were related to relative ocean entry timing, with lower growth rates for stocks that had only recently arrived in marine waters. Our results demonstrate that stocks within a single basin can differ in their size and timing of ocean entry, life history traits that contribute to early marine growth and potentially to the survival of juvenile salmon. Our results also highlight the necessity of considering stock-specific variation in life history traits to understand salmon ecology and survival across the entire life cycle. Received January 16, 2015; accepted April 28, 2015

Weitkamp, Laurie A.↗

Genomic insights into local adaptation and migration success in reintroduced Coho Salmon of the Wenatchee River basin

ABSTRACT Objective Reintroduction of salmonids into regions where they have been extirpated is a common conservation strategy that is often implemented through natural recolonization, translocation of natural populations, or hatchery-based programs. Locally adapting to specific environmental conditions is critical for long-term population viability, particularly for species like Coho Salmon Oncorhynchus kisutch, which face diverse selective pressures during their migration. This study focused on the mid-Columbia River Coho Salmon reintroduction program managed by Yakama Nation Fisheries, which has successfully reintroduced Coho Salmon into the Wenatchee and Methow River basins, Washington. Notably, these populations have adapted to the longer migration route than those in the founding stock, with selection favoring individuals with an earlier arrival time and that can navigate a 15-km, high-gradient canyon to reach optimal spawning grounds. The objectives of this study were to investigate whether specific genomic regions are under selection for traits associated with return location and timing in Coho Salmon. Methods Low-coverage whole-genome resequencing data were used to screen for genomic regions associated with the phenotypes of interest. Results A weak polygenic signal in female Coho Salmon was found to be associated with return group, with a subset of candidate adaptive regions occurring across eight chromosomes. Conclusions These findings provide insights into the genomic mechanisms underlying local adaptation in reintroduced salmon populations and inform broodstock selection strategies aimed at promoting natural production and long-term population sustainability.

Horn, Rebekah L.↗

Sphingobium lignivorans sp. nov., isolated from river sediment downstream of a paper mill

Here, a bacterial isolate, B1D3A T , was isolated from river sediment collected from the Hiwassee River near Calhoun, TN, by enrichment culturing with a model 5–5' lignin dimer, dehydrodivanillate, as its sole carbon source. B1D3A T was also shown to utilize several model lignin-derived monomers and dimers as sole carbon sources in a variety of minimal media. Cells were Gram-stain-negative, aerobic, motile, rod-shaped and formed yellow/cream-coloured colonies on rich agar. Optimal growth occurred at 30°C, pH 7–8, and in the absence of NaCl. The major fatty acids of B1D3A T were C 18:1 ω7c and C 17:1 ω6c. The predominant hydroxy fatty acids were C 14: 0 2-OH and C 15:0 2-OH. The polar lipid profile consisted of a mixture of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, phosphatidyldimethylethanolamine and sphingoglycolipid. B1D3A T contained spermidine as the only major polyamine. The major isoprenoid quinone was Q-10 with minor amounts of Q-9 and Q-11. The genomic DNA G+C content of B1D3A T was 65.6mol%. Phylogenetic analyses based on 16S rRNA gene sequences and coding sequences of 49 core, universal genes defined by Clusters of Orthologous Groups gene families indicated that B1D3A T was a member of the genus Sphingobium. B1D3A T was most closely related to Sphingobium sp. SYK-6, with a 100% 16S rRNA gene sequence similarity. B1D3A T showed 78.1–89.9%average nucleotide identity and 19.5–22.2% digital DNA–DNA hybridization identity with other type strains from the genus Sphingobium. On the basis of phenotypic and genotypic properties and phylogenetic inference, strain B1D3A T should be classified as representing a novel species of the genus Sphingobium, for which the name Sphingobium lignivorans sp. nov. is proposed. The type strain is strain B1D3A T (ATCC TSD-279 T =DSM 111877 T ).

59 BASIC BIOLOGICAL SCIENCES↗

A Comprehensive Calibration Framework for the Northwest River Forecast Center

We present a comprehensive framework developed by the Northwest River Forecast Center for calibrating hydrologically diverse basins. The framework includes models for snow, soil moisture, routing, channel loss, and consumptive use. Data inputs include a wide range of open-access datasets for meteorology, land use, topography, and land cover. The framework uses conceptual hydrologic models to handle basins with various hydrologic regimes including rain-driven and snowmelt-dominated basins. We also develop a flexible automatic calibration system that can handle numerous unobservable model parameters in a computationally efficient manner. A single-basin automatic calibration run can typically be completed on a modern laptop in under 10 min. We found that model performance metrics for this new approach match the quality of the NWRFC's previous labor-intensive manual calibrations. The model performance also rivals that of a state-of-the-art deep learning model at a fraction of the computational cost. This framework presents a new standard for the quality of calibrations possible with lumped conceptual hydrologic models, combining careful data curation, an objective calibration framework, and expert local knowledge. In addition, we have made software packages available for the entire suite of National Weather Service River Forecast System models, including SAC-SMA, SNOW-17, and Lag-K. These modern interfaces are intended to increase accessibility and facilitate future research.

Forecasting↗

Modelling individual variability in growth of bull trout in the Walla Walla River Basin using a hierarchical von Bertalanffy growth model

Abstract We examined growth in length of fluvial bull trout ( Salvelinus confluentus ) in the Walla Walla River Basin, Washington and Oregon. Our objectives were to quantify individual variability in growth; examine growth within and among years, life history forms, life stages and sexes; and estimate von Bertalanffy growth parameters. Individual variability was evaluated by modelling asymptotic length ( L ∞ ) and the growth coefficient ( k ) as random variables. All models were fit with Bayesian methods and were evaluated for fit by the deviance information criterion. By incorporating individual variability, population‐level estimates of L ∞ and k appeared appropriate and estimated growth trajectories for specific bull trout fit individual observed patterns in growth. Growth trajectories and positive correlation between individual estimates of L ∞ and k suggest that some individuals grow at a faster rate and reach a larger maximum size than other individuals and those differences are maintained throughout life. Selected models suggest that fluvial migrants have higher estimates of L ∞ and k than residents, but there were only slight differences in parameter estimates among migrants from two adjacent spawning populations in the Walla Walla River Basin, as well as between males and females. Growth rates increased for fluvial migrants after subadult emigration. Individual variability in growth is consistent with the life history diversity assumed essential for bull trout population persistence. Quantifying this variability is important for modelling population dynamics and viability to conserve this threatened species.

Harris, Julianne E.↗

Otolith 87 Sr / 86 Sr identifies natal origin, movement and life history of Burbot Lota lota in the Kootenai River following 45 years of impoundment

Abstract Hydropower has long been an effective form of renewable energy, but the development of the resource has negatively impacted fishes throughout the world. Formulating recovery plans to mitigate these effects requires a firm understanding of species‐specific provenance, life history and life stage habitat requirements. However, the importance of this information is often only recognised after a substantial population decline, when obtaining it becomes demographically challenging. We provide a case study for this scenario and present a post hoc approach to gain insight into these critical data gaps for Burbot Lota lota in the upper Kootenai River in Montana and British Columbia. The population once supported a robust tribal and recreational harvest but declined following impoundment and these fisheries have remained closed or curtailed for nearly 20 years. The reasons for the decline are unknown and actions to assist recovery have been constrained by limited information regarding natal origin, life history and habitat use. We addressed this issue using strontium isotope ratios ( 87 Sr/ 86 Sr) in otoliths collected over four decades in Lake Koocanusa, the reservoir on the Kootenai River above Libby Dam. Due to the geologic heterogeneity of the basin and resulting variation in water 87 Sr/ 86 Sr, the assignment probability for Burbot to their region of natal origin approached unity. Otolith 87 Sr/ 86 Sr also indicated the population was comprised of mainstem‐ and tributary‐origin forms and their relative abundance changed over time. Mainstem Burbot was most abundant during the 1970s and 2000s, whereas tributary forms dominated between these periods. We suggest ecosystem changes following impoundment contributed to this shift in life history forms and the overall decline of the population. Our findings underscore the need for additional investigations of these impacts to guide restoration efforts.

Dunnigan, James L.↗

A piecewise regression approach for determining biologically relevant hydraulic thresholds for the protection of fish at river infrastructure

Barotrauma injury can occur when fish are exposed to rapid decompression during downstream passage through river infrastructure. A piecewise regression approach was used to objectively quantify barotrauma injury thresholds in two physoclistous species (Murray cod Maccullochella peelii and silver perch Bidyanus bidyanus) following simulated infrastructure passage in barometric chambers. The probability of injuries such as swim bladder rupture; exophthalmia; and haemorrhage and emphysema in various organs increased as the ratio between the lowest exposure pressure and the acclimation pressure (ratio of pressure change RPCE/A) fell. The relationship was typically non-linear and piecewise regression was able to quantify thresholds in RPCE/A that once exceeded resulted in a substantial increase in barotrauma injury. Thresholds differed among injury types and between species but by applying a multi-species precautionary principle, the maintenance of exposure pressures at river infrastructure above 70% of acclimation pressure (RPCE/A of 0.7) should sufficiently protect downstream migrating juveniles of these two physoclistous species. These findings have important implications for determining the risk posed by current infrastructures and informing the design and operation of new ones.

barotrauma↗

Global patterns and drivers of ecosystem functioning in rivers and riparian zones

River ecosystems receive and process vast quantities of terrestrial organic carbon, the fate of which depends strongly on microbial activity. Variation in and controls of processing rates, however, are poorly characterized at the global scale. In response, we used a peer-sourced research network and a highly standardized carbon processing assay to conduct a global-scale field experiment in greater than 1000 river and riparian sites. We found that Earth’s biomes have distinct carbon processing signatures. Slow processing is evident across latitudes, whereas rapid rates are restricted to lower latitudes. Both the mean rate and variability decline with latitude, suggesting temperature constraints toward the poles and greater roles for other environmental drivers (e.g., nutrient loading) toward the equator. These results and data set the stage for unprecedented “next-generation biomonitoring” by establishing baselines to help quantify environmental impacts to the functioning of ecosystems at a global scale.

54 ENVIRONMENTAL SCIENCES↗

Human perturbations to mercury in global rivers

Mercury compounds are potent neurotoxins that pose threats to human health, primarily through fish consumption. Rivers, critical for drinking water and food supply, have seen rapid increases in mercury concentrations and export to coastal margins since the Industrial Revolution (~1850). However, patterns of these changes remain understudied, limiting assessments of environmental policies. Here, we develop a global model to simulate preindustrial riverine total mercury and assess human perturbations by comparing it to present-day conditions. We find that global rivers transported ~390 megagrams annually of mercury to the oceans in the preindustrial era, with spatial variability. Human activities have elevated riverine mercury budgets by two to three times in the present day. Establishing a baseline riverine mercury level, our findings reveal rapid responses of riverine mercury to human perturbations and could be used to inform targets for global riverine mercury restoration. Total riverine mercury concentrations could also be used as indicators to comprehensively understand the effectiveness of mercury pollution governance.

Science & Technology - Other Topics↗

Timescales of mafic magmatic fractionation documented by paleosecular variation in basaltic drill core, Snake River Plain volcanic province, Idaho, USA

Abstract The timescales over which fractional crystallization and recharge work in mafic volcano-plutonic provinces is subject to great uncertainty. Currently modeled processes are subject to the scale of measurement: monogenetic basaltic fields accumulate over hundreds of thousands of years, consistent with U-Th-Ra isotopic variations that imply 50% crystallization of basic magmas on timescales of 100,000 years or more, whereas crystal diffusion modeling implies phenocryst residence times of ~1–1000 years. Monogenetic basalts of the Snake River Plain in southern Idaho, USA, are up to 2 km thick and postdate passage over the Yellowstone–Snake River Plain hotspot. Detailed lithologic and geophysical logging of core from deep drill holes, along with chemical stratigraphy and high-resolution paleomagnetic inclination measurements, document individual eruptive units, compound lava flows, and basaltic flow groups that accumulated over 1–6 m.y. Hiatuses are commonly marked by loess or fluvial interbeds that vary from ~0.1 m thick to 20 m thick. Radiometric (40Ar-39Ar, detrital zircon U-Pb) and paleomagnetic timescale ages show that the deepest hole (Kimama drill hole, 1912 m total depth) accumulated over ~6 m.y. Cycles of fractional crystallization and recharge are recognized in the chemical stratigraphy as up-section shifts in major and trace elements; these fractionation cycles commonly represent 40%–50% fractionation. Individual fractionation cycles may comprise 20–40 eruptive units (8–17 lava flows) with little to no change in paleomagnetic inclination (0°–1°), whereas adjacent cycles may differ by several degrees from one another or reflect changes in polarity. Rates of paleosecular variation in Holocene lavas and sediments dated using 14C document significant shifts in magnetic inclination over short timescales, ranging from ~0.05° to 2°/decade, with an average of ~0.5°/decade and a minimum rate of 0.05°/decade. This implies that fractionation cycles with ≤1° variation in magnetic inclination formed on timescales of a few decades up to a few centuries (20–200 years). Thus, the lavas collectively represent only a few thousand years of eruptive activity, with major flow groups separated in time by tens to hundreds of thousands of years. We suggest that the rates defined by paleosecular variation capture the timescales of magmatic chamber evolution (fractionation/recharge) in the seismically imaged mid-crustal sill complex; in contrast, we suggest that crystal diffusion modeling captures the residence times in shallow subvolcanic magmatic chambers that underlie individual monogenetic volcanoes.

Geology↗

Factors affecting powerhouse passage of spring migrant smolts at federally operated hydroelectric dams of the Snake and Columbia rivers

From 2008 to 2018, acoustic telemetry studies were conducted to evaluate dam passage survival of spring migrant Chinook salmon and steelhead smolts at seven of the eight federally operated dams on the lower Snake and Columbia rivers. Data from over 87 000 dam passage events were evaluated using regression modeling to identify the effect of spill operations, environmental conditions, and fish characteristics on powerhouse passage probability. In general, powerhouse passage was positively correlated with discharge, negatively correlated with forebay temperature and fish size, and higher for fish that passed the dam at night and for those that approached from the powerhouse side of the river, suggesting powerhouse passage is largely a function of smolt activity level and swimming ability. As such, spilling large volumes of water to reduce powerhouse passage is likely to be most effective during times of reduced activity and swimming ability (e.g., at night, high flows, and cold temperatures). This information can be used to develop dam- and time-specific spill operations that optimize smolt passage, power generation, and other competing demands, such as adult passage.

60 APPLIED LIFE SCIENCES↗

Spatial Variability of Winds and HRRR–NCEP Model Error Statistics at Three Doppler-Lidar Sites in the Wind-Energy Generation Region of the Columbia River Basin

Annually and seasonally averaged wind profiles from three Doppler lidars were gathered from sites in the Columbia River basin of east-central Oregon and Washington, a major region of wind-energy production, for the Second Wind Forecast Improvement Project (WFIP2) experiment. The profile data are used to quantify the spatial variability of wind flows in this area of complex terrain, to assess the HRRR-NCEP model's ability to capture spatial and temporal variability of wind profiles, and to evaluate model errors. Annually averaged measured wind speed differences over the 70-km extent of the lidar measurements reached 1 m s -1 within the wind-turbine rotor layer, and 2 m s -1 for 200-500 m AGL. Stronger wind speeds in the lowest 500 m occurred at sites higher in elevation, farther from the river, and farther west - closer to the Cascade Mountain barrier. Validating against the lidar data, the HRRR model underestimated strong wind speeds (>12 m s -1 ) and, consequently, their frequency of occurrence, especially at the two lowest-elevation sites, producing annual low biases in rotor-layer wind speed of 0.5 m s -1 . The RMSE between measured and modeled winds at all sites was about 3 m s -1 and did not degrade significantly with forecast lead time. The nature of the model errors was different for different seasons. Furthermore, although the three sites were located in the same basin terrain, the nature of the model errors was different at each site. Thus, if only one of the sites had been instrumented, different conclusions would have been drawn as to the major sources of model error, depending on where the measurements were made.

17 WIND ENERGY↗

Controls on Turbulent Mixing in a Strongly Stratified and Sheared Tidal River Plume

Considerable effort has been made to parameterize turbulent kinetic energy (TKE) dissipation rate ..epsilon.. and mixing in buoyant plumes and stratified shear flows. Here, a parameterization based on Kunze et al. is examined, which estimates ..epsilon.. as the amount of energy contained in an unstable shear layer (Ri < Ric) that must be dissipated to increase the Richardson number Ri = N2/S2 to a critical value Ric within a turbulent decay time scale. Observations from the tidal Columbia River plume are used to quantitatively assess the relevant parameters controlling ..epsilon.. over a range of tidal and river discharge forcings. Observed ..epsilon.. is found to be characterized by Kunze et al.'s form within a factor of 2, while exhibiting slightly decreased skill near Ri = Ric. Observed dissipation rates are compared to estimates from a constant interfacial drag formulation that neglects the direct effects of stratification. This is found to be appropriate in energetic regimes when the bulk-averaged Richardson number Rib is less than Ric/4. However, when Rib > Ric/4, the effects of stratification must be included. Similarly, ..epsilon.. scaled by the bulk velocity and density differences over the plume displays a clear dependence on Rib, decreasing as Rib approaches Ric. The Kunze et al. ..epsilon.. parameterization is modified to form an expression for the nondimensional dissipation rate that is solely a function of Rib, displaying good agreement with the observations. It is suggested that this formulation is broadly applicable for unstable to marginally unstable stratified shear flows.

16 TIDAL AND WAVE POWER↗