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All sources NASA NTRS DOE OSTI

DOE OSTI2023

Plant terpene specialized metabolism: complex networks or simple linear pathways?

From the perspectives of pathway evolution, discovery and engineering of plant specialized metabolism, the nature of the biosynthetic routes represents a critical aspect. Classical models depict biosynthesis typically from an end-point angle and as linear, for example, connecting central and specialized metabolism. As the number of functionally elucidated routes increased, the enzymatic foundation of complex plant chemistries became increasingly well understood. The perception of linear pathway models has been severely challenged. With a focus on plant terpenoid specialized metabolism, we review here illustrative examples supporting that plants have evolved complex networks driving chemical diversification. The completion of several diterpene, sesquiterpene and monoterpene routes shows complex formation of scaffolds and their subsequent functionalization. These networks show that branch points, including multiple sub-routes, mean that metabolic grids are the rule rather than the exception. This concept presents significant implications for biotechnological production.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2024

A Deep Multimodal Representation Learning Framework for Accurate Molecular Properties Prediction

Drug discovery is a complex and challenging process, requiring the optimization of candidate compounds to identify those with the potential to become safe and effective drugs. Predicting molecular properties is an indispensable step in the drug discovery pipeline. Traditionally, this process is costly and time-intensive, involving multiple rounds of experiments and clinical trials, rendering it impractical for every candidate compound. Deep learning techniques have emerged as a promising approach to drug discovery to reduce the cost and time required to identify novel drugs. However, prevalent research in deep learning models focused on predicting molecular properties has primarily fixated on single-modal models, which utilize a single modality of data, neglecting the potential benefits of combining different data modalities. To overcome this limitation, we introduce MRL-Mol: a deep \textbf{M}ultimodal \textbf{R}epresentation \textbf{L}earning framework for accurate \textbf{Mol}ecular properties prediction. MRL-Mol harnesses three data modalities: sequence, graph, and image, augmenting the depth of comprehension. Leveraging a large-scale unlabeled dataset~($\sim$1M unique molecules), we pretrain MRL-Mol to extract inter- and intra-modal information. Our study demonstrates the superior performance of MRL-Mol in predicting molecular properties across six benchmark datasets, including both classification and regression tasks. Notably, MRL-Mol outperforms other state-of-the-art molecular properties prediction models. These findings suggest that by combining information from multiple data modalities, MRL-Mol can comprehend molecules better than single-modal deep learning models and identify molecular properties with better accuracy.

Yang, Yuxin↗

DOE OSTI2020

Erosion Experimentation in Solar Power Systems

An alternate and sustainable form of energy is concentrated solar power (CSP) systems, which capture and store the sun’s energy in the form of heat. To increase the efficiency and overall cost of the plant, particles were used as a heat transfer medium. As particles flow through this system, the movement of particles creates erosion, in the forms of abrasion and attrition. Experiments were tested at room temperature and 800 degrees Celsius for both abrasion wear and attrition erosion. In abrasion wear, specimens were placed inside a container, particles were added, and the specimen rotated in and out of the particles. In attrition erosion, a steel disk rotated amongst particles which resulted in particles rubbing against each other. Abrasion wear increased when temperature increased while attrition showed that the particles broke down as the amount of time increased. For attrition at 800 degrees Celsius, oxide was increased and mixed with the particles. Durability models will be created to predict attrition and abrasion based on the particle and specimen mechanical properties. This discovery shows that this method of utilizing particles for CSP plants would improve efficiency and decrease overall costs.

14 SOLAR ENERGY↗

DOE OSTI2021

Measurement of Charged-Current $ν_μ$ and $ν_e$ Interactions Towards a Search for Low-Energy $ν_Ε$ Excess Using Wire-Cell In Microboone

This technote summarizes the existing work in searching for $ν_e$ low-energy excess (eLEE) in MicroBooNE Booster Neutrino Beam (BNB) data stream based on the Wire-Cell event reconstruction paradigm. The charged-current $ν_μ$ and $ν_e$ events are selected from the 5.3e19 POT open data from the BNB beam, 6.37e20 POT far sideband from the BNB beam data, and 2.10e20 POT data from Neutrinos at the Main Injector (NuMI) beam. The charged-current $ν_e$ selection results from the BNB data that are sensitive to the eLEE search are not included. Various comparisons between data and Monte Carlo predictions are performed to validate the overall model and demonstrate the power of the analysis techniques. Physics sensitivities in terms of the exclusion and the discovery potential are presented.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2026

Uncertainty-Driven Rapid Thermodynamic Assessment of Nb-Ta-Zr System and Effects of C impurities (L25GF9298S): Annual Progress Report

An integrated computational materials engineering (ICME) method is in development for rapid thermodynamic experimental investigation and high-fidelity computational modeling of refractory multi-principal element alloys (RMPEAs). These ultra-high-temperature (UHT) alloys are of interest for structural applications in extreme environments, but deficiency of reliable data, especially melting temperatures, impedes the prediction of alloys with favorable properties. The method leverages UHT capabilities and computational expertise of LLNL’s Materials Science Division and the McCormack Lab’s UHT conical nozzle levitation (CNL) system to iteratively map the Nb-Ta-Zr phase space, with focus on the liquidus surface, through targeted experiments selected by quantifying uncertainty in the thermodynamic model fitting parameters. This method will reduce the time to map uncharted RMPEA phase space and thereby accelerate discovery and development of advanced materials for applications in extreme environments.

36 MATERIALS SCIENCE↗

NASA NTRS1973

Galactic X-ray polarimetry and high-resolution X-ray spectroscopy.

Stellar X-ray spectroscopy and polarimetry are discussed in terms of the source parameters that can be determined through such studies and in terms of the constraints that these studies will place on theoretical models. The spectroscopic and polarimetric results that have been obtained to date are reviewed. These include the recent discovery of X-ray polarization in the Crab Nebula and the recent evidence for X-ray coronal line emission in the Cygnus Loop. Finally, the properties and predicted performance of a number of satellite-borne spectrometers and polarimeters are presented.

Novick, R.↗

NASA NTRS1975

Mariner 9 - An instrument of dynamical science

We review and evaluate the contributions of Mariner 9 in improving our knowledge of the dynamical characteristics of Mars and its two satellites, Phobos and Deimos. Primary results include the discovery of the large gravitational and topographical bulge in the Tharsis region, the development of a detailed gravity model representable as coefficients in a spherical harmonic expansion, the development of a topographic model exhibiting a three kilometer displacement of the center of figure from the center of mass, and the determination of the size, shape and motion of Phobos and Deimos.

Jordan, J. F.↗

NASA NTRS1987

New developments in studies of compact X-ray binaries

Several recent developments, both observational and theoretical, on the study of X-ray binaries and the compact objects they contain are discussed. The recent discovery of the first binary periods for the globular cluster X-ray sources has stimulated a new model for their origin. As a variant of the 'standard' tidal capture origin model, this predicts an enhanced number of neutron stars in globular clusters. Long term timing studies of X-ray binaries may be consistent with many of these systems, primarily X-ray burst sources, being in fact hierarchical triple systems. Finally, the radio studies of Cyg X-3 and other X-ray binaries suggest that nonthermal processes are as important, energetically, as accretion processes in these systems.

Grindlay, Jonathan E.↗

NASA NTRS2004

Putting Priors in Mixture Density Mercer Kernels

This paper presents a new methodology for automatic knowledge driven data mining based on the theory of Mercer Kernels, which are highly nonlinear symmetric positive definite mappings from the original image space to a very high, possibly infinite dimensional feature space. We describe a new method called Mixture Density Mercer Kernels to learn kernel function directly from data, rather than using predefined kernels. These data adaptive kernels can en- code prior knowledge in the kernel using a Bayesian formulation, thus allowing for physical information to be encoded in the model. We compare the results with existing algorithms on data from the Sloan Digital Sky Survey (SDSS). The code for these experiments has been generated with the AUTOBAYES tool, which automatically generates efficient and documented C/C++ code from abstract statistical model specifications. The core of the system is a schema library which contains template for learning and knowledge discovery algorithms like different versions of EM, or numeric optimization methods like conjugate gradient methods. The template instantiation is supported by symbolic- algebraic computations, which allows AUTOBAYES to find closed-form solutions and, where possible, to integrate them into the code. The results show that the Mixture Density Mercer-Kernel described here outperforms tree-based classification in distinguishing high-redshift galaxies from low- redshift galaxies by approximately 16% on test data, bagged trees by approximately 7%, and bagged trees built on a much larger sample of data by approximately 2%.

Srivastava, Ashok N.↗

NASA NTRS2005

Blazar Continuum Variability II: Entering the GLAST Era

Intense, highly-variable gamma-ray emission from blazars was a principal discovery made with EGRET on the Compton Gamma Ray Observatory. The EGRET data remain a valuable resource for modeling of blazar astrophysics and for planning of future gamma-ray missions such as AGILE and GLAST. This presentation will review a bit of history and summarize the EGRET blazar legacy, with emphasis on work done since the end of the Compton Observatory mission.

Thompson, D. J.↗

NASA NTRS2005

An Ensemble Approach to Building Mercer Kernels with Prior Information

This paper presents a new methodology for automatic knowledge driven data mining based on the theory of Mercer Kernels, which are highly nonlinear symmetric positive definite mappings from the original image space to a very high, possibly dimensional feature space. we describe a new method called Mixture Density Mercer Kernels to learn kernel function directly from data, rather than using pre-defined kernels. These data adaptive kernels can encode prior knowledge in the kernel using a Bayesian formulation, thus allowing for physical information to be encoded in the model. Specifically, we demonstrate the use of the algorithm in situations with extremely small samples of data. We compare the results with existing algorithms on data from the Sloan Digital Sky Survey (SDSS) and demonstrate the method's superior performance against standard methods. The code for these experiments has been generated with the AUTOBAYES tool, which automatically generates efficient and documented C/C++ code from abstract statistical model specifications. The core of the system is a schema library which contains templates for learning and knowledge discovery algorithms like different versions of EM, or numeric optimization methods like conjugate gradient methods. The template instantiation is supported by symbolic-algebraic computations, which allows AUTOBAYES to find closed-form solutions and, where possible, to integrate them into the code.

Srivastava, Ashok N.↗

NASA NTRS2015

ODISEES: Ontology-Driven Interactive Search Environment for Earth Sciences

This paper discusses the Ontology-driven Interactive Search Environment for Earth Sciences (ODISEES) project currently being developed to aid researchers attempting to find usable data among an overabundance of closely related data. ODISEES' ontological structure relies on a modular, adaptable concept modeling approach, which allows the domain to be modeled more or less as it is without worrying about terminology or external requirements. In the model, variables are individually assigned semantic content based on the characteristics of the measurements they represent, allowing intuitive discovery and comparison of data without requiring the user to sift through large numbers of data sets and variables to find the desired information.

Rutherford, Matthew T.↗

DOE OSTI2020

Modern Muon Physics: Selected Issues

The muon was discovered almost hundred years ago, but still remains largely a mystery. For a long time, the only difference between a muon and an electron was the approximately 200 times greater mass of the muon. However, with the later discovery of the charm quantum number, the muon played a decisive role in the formulation of the Standard Model of elementary particles, determining together with muon neutrino and the strange s and the charm c quarks the second generation of particles of this model. The equality of the reaction constant of muon decay with the constant of the vector interaction of beta-decay played a decisive role in the formulation of the conservation of the vector current (CVC) of the weak interaction of elementary particles. Processes involving muons testified in favor of the partial conservation of the axial current of weak interaction (PCAC), that is, one pion exchange in the interaction of the lepton and hadron currents. It was the muon that gave a rise to hopes of creating an alternative energy source within the framework of Muon Catalyzed Fusion (μCF). The possible realization of this process in the future as the intensity of muon beams increases can revolutionired energy supply. Nuclear fission by muons and the study of heavy-nucleus mesoatoms introduced muon physics into several separate branches of physical research.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2022

Development of a Laser Ultrasonics-based Approach for Rapid Screening of High Entropy Alloys

This project utilized a laser ultrasonic technique to systematically study temperature-induced evolution of material properties in a set of interrelated binary alloys and a high entropy alloy (HEA) fabricated using arc-melting and spark plasma sintering processes. This technique involved the use of a nanosecond duration, high-intensity pulsed laser to thermo-elastically generate ultrasonic waves that propagate in the bulk of the metal alloy. Sub-nanometer-scale displacements associated with the propagating bulk ultrasonic waves were detected along the epicenter on the opposite surface of the sample using a 1 GHz bandwidth photorefractive interferometer. Phase transformations and microstructural changes were inferred from the temperature-dependent trends in the bulk acoustic velocities and features in the ultrasonic epicentral waveforms measured in the binary alloys. These inferences were then correlated with electron/optical microscopy observations and predictions using calculations of phase diagrams (CALPHAD). The results showed that the laser-generated ultrasonic pulses were strongly influenced by changes in material microstructure and could accurately track thermally driven phase transformations and detect the presence of microscale heterogeneities (grain boundaries, dendritic structures, etc.) in the set of binary alloy samples. The measurement approach was then applied to a quinary HEA sample for estimating phase transition temperature and determining microstructural heterogeneity. The rapid, non-contact and non-destructive ultrasonic testing approach demonstrated here is amenable to high throughput combinatorial investigations that can be applied to graded composition HEAs produced using advanced manufacturing methods. When paired with atomistic simulations and CALPHAD modeling, this approach can overcome the bottlenecks faced by current material characterization methods in efficiently screening the vast discovery space of HEAs that spans over a hundred million unique quinary alloy compositions.

36 MATERIALS SCIENCE↗

DOE OSTI2024

Automated electrosynthesis reaction mining with multimodal large language models (MLLMs)

Leveraging the chemical data available in legacy formats such as publications and patents is a significant challenge for the community. Automated reaction mining offers a promising solution to unleash this knowledge into a learnable digital form and therefore help expedite materials and reaction discovery. However, existing reaction mining toolkits are limited to single input modalities (text or images) and cannot effectively integrate heterogeneous data that is scattered across text, tables, and figures. In this work, we go beyond single input modalities and explore multimodal large language models (MLLMs) for the analysis of diverse data inputs for automated electrosynthesis reaction mining. We compiled a test dataset of 65 articles (MERMES-T24 set) and employed it to benchmark five prominent MLLMs against two critical tasks: (i) reaction diagram parsing and (ii) resolving cross-modality data interdependencies. The frontrunner MLLM achieved ≥96% accuracy in both tasks, with the strategic integration of single-shot visual prompts and image pre-processing techniques. We integrate this capability into a toolkit named MERMES (multimodal reaction mining pipeline for electrosynthesis). Our toolkit functions as an end-to-end MLLM-powered pipeline that integrates article retrieval, information extraction and multimodal analysis for streamlining and automating knowledge extraction. This work lays the groundwork for the increased utilization of MLLMs to accelerate the digitization of chemistry knowledge for data-driven research.

Leong, Shi Xuan↗

DOE OSTI2023

The Hunt for High-Tc Superconductivity: from Discovery to Breakthrough [Slides]

Summary/Outlook: BCS pairing theory of superconductivity is a prototypical example of a condensed matter physics problem. It has inspired the Weinberg Salam model for Electroweak interactions; So far there is no quantitative theory of superconductivity in strongly correlated materials. The limits on Tc are still unknown; Almost all known superconducting materials were found without theoretical guidance; The next-generation of first-principles approaches is beginning to captures a more holistic picture of correlated materials, giving way to a more quantitative theory of materials.

36 MATERIALS SCIENCE↗

DOE OSTI2023

Data-driven Whitney forms for structure-preserving control volume analysis

Control volume analysis models physics via the exchange of generalized fluxes between subdomains. Here, we introduce a scientific machine learning framework adopting a partition of unity architecture to identify physically-relevant control volumes, with generalized fluxes between subdomains encoded via Whitney forms. The approach provides a differentiable parameterization of geometry which may be trained in an end-to-end fashion to extract reduced models from full field data while exactly preserving physics. The architecture admits a data-driven finite element exterior calculus allowing discovery of mixed finite element spaces with closed form quadrature rules. An equivalence between Whitney forms and graph networks reveals that the geometric problem of control volume learning is equivalent to an unsupervised graph discovery problem. The framework is developed for manifolds in arbitrary dimension, with examples provided for H(div) problems in $\mathbb{R}$ establishing convergence and structure preservation properties. Finally, we consider a lithium-ion battery problem where we discover a reduced finite element space encoding transport pathways from high-fidelity microstructure resolved simulations. The approach reduces the 5.89M finite element simulation to 136 elements while reproducing pressure to under 0.1% error and preserving conservation.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2026

Rhythmic Mechanisms Governing CAM Photosynthesis in Kalanchoe fedtschenkoi : High-Resolution Temporal Transcriptomics

Crassulacean acid metabolism (CAM) is a specialized photosynthetic pathway that enhances water-use efficiency by temporally separating nocturnal CO 2 uptake from daytime decarboxylation and carbon fixation. To uncover the regulatory mechanisms coordinating these temporal dynamics, we generated high-resolution, 48 h time-course transcriptomes for the CAM model Kalanchoe fedtschenkoi under both 12 h/12 h light/dark (LD) cycles and continuous light (LL). A rhythmicity analysis revealed that diel light cues are the dominant driver of transcript oscillations: 16,810 genes (54.3% of annotated genes) exhibited rhythmic expression only under LD, whereas just 399 genes (1.3%) remained rhythmic under LL. A smaller set of 3009 genes (9.7%) oscillated in both conditions, indicating that the intrinsic circadian clock sustains rhythmicity for a limited subset of the transcriptome. A gene co-expression network analysis revealed extensive integration between circadian clock components, core CAM pathway enzymes, and stomatal regulators, defining regulatory modules that coordinate metabolic and physiological timing. Notably, key hub genes associated with post-translational and post-transcriptional regulation, including the E3 ubiquitin ligase HUB2 and several pentatricopeptide repeat (PPR) proteins, act as central nodes in CAM-associated networks. This discovery implicates epigenetic and organellar regulation as previously unrecognized critical tiers of control in CAM. Together, our results support a regulatory model in which CAM rhythmicity is governed by both external light/dark cues and the endogenous circadian clock through multi-level control spanning transcriptional and protein-level regulation. To support community exploration, we also provide an interactive eFP (electronic Fluorescent Pictograph) browser for visualizing time-resolved gene expression profiles.

09 BIOMASS FUELS↗