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At least 847 records · Page 47

HDF5-Version 1.12.0

The HDF5 library and file format implement the HDF5 data model for storing and managing data. This implementation supports an unlimited variety of datatypes and is designed for flexible and efficient I/O and for high volume and complex data. It is highly portable and extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format and other implementations.

The HDF Group, None↗

LLEPE

LLEPE (liquid-liquid equilibrium parameter estimator) is a tool for estimating thermodynamic parameters like standard enthalpies, standard molar volumes and Pitzer coefficients, by combining Gibbs minimization with regression to multiphase equilibrium isotherm data. It also includes visualization tools to access data quality and prediction model performance.

ILOEJE, CHUKWUNWIKE↗

Platform for efficient large-scale storage and analysis of multi-omics data in plant and microbial systems (Final Technical Report)

Genomic variation at the sequence level fundamentally affects the phenotypic state of all organisms at all stages of development, while dynamic processes such as changes in the epigenome (e.g. DNA methylation state) and transcriptome regulate the specific phenotype expressed at any given state of development based upon that genomic variation. In plants, DNA methylation is a particularly important mechanism for both regulating transcriptomic expression and for management of genomic variations that could be deleterious to the organism due to the presence of active retrotransposons in plant genomes. While DNA methylation is heritable, it is also dynamic through a given plant’s development and life cycle, particularly during the development from seed to mature specimen suggesting variations in DNA methylation could be critical regulators of biologically and commercially important phenotypes such as time to flowering; in addition, plant DNA methylation is more complex than that of animals, with methylation of CHG and CHH trinucleotides evident in addition to the better-known CG methylation. The complexity of plant DNA methylation and its interplay with genomic sequence variation, transcriptomics and other epigenomic factors demand a storage and analysis framework that can cope with the complexity both within a single specimen and with analyses that span many individuals and even many species, such as attempts to extend models from model organisms to commercially relevant species. In addition to complexity, the rapid development and proliferation of sequencing technology has led to an explosion of data volume that conventional storage and analysis solutions will likely be unable to cope with in the long run. We proposed to study these with suitable distributed storage and computation and therefore for the application of cloud computing to biological analyses; integrate with existing data sources and compatible with virtually any interface use case, from fully automated shell scripts to notebooks and do all these at scale in this STTR grant.

60 APPLIED LIFE SCIENCES↗

Object storage model for CMS data

In CMS, data access and management is organized around the data-tier model: a static definition of what subset of event information is available in a particular dataset, realized as a collection of files. In previous work, we have proposed a novel data management model that obviates the need for data tiers by exploding files into individual event data product objects. In this work, we estimate the potential savings in data volume based on user analysis patterns.

Smith, Nick↗

Antarctic ice sheet model comparison with uncurated geological constraints shows that higher spatial resolution improves deglacial reconstructions

Accurately reconstructing past changes to the shape and volume of the Antarctic ice sheet relies on the use of physically based and thus internally consistent ice sheet modeling, benchmarked against spatially limited geologic data. The challenge in model benchmarking against geologic data is diagnosing whether model-data misfits are the result of an inadequate model, inherently noisy or biased geologic data, and/or incorrect association between modeled quantities and geologic observations. In this work we address this challenge by (i) the development and use of a new model-data evaluation framework applied to an uncurated data set of geologic constraints, and (ii) nested high-spatial-resolution modeling designed to test the hypothesis that model resolution is an important limitation in matching geologic data. While previous approaches to model benchmarking employed highly curated datasets, our approach applies an automated screening and quality control algorithm to an uncurated public dataset of geochronological observations (specifically, cosmogenic-nuclide exposure-age measurements from glacial deposits in ice-free areas). This optimizes data utilization by including more geological constraints, reduces potential interpretive bias, and allows unsupervised assimilation of new data as they are collected. We also incorporate a nested model framework in which high-resolution domains are downscaled from a continent-wide ice sheet model. We highlight the application of this framework by applying these methods to a small ensemble of deglacial ice-sheet model simulations, and demonstrate that the nested approach improves the ability of model simulations to match exposure age data collected from areas of complex topography and ice flow. We develop a range of diagnostic model-data comparison metrics to provide more insight into model performance than possible from a single-valued misfit statistic, showing that different metrics capture different aspects of ice sheet deflation.

Geosciences↗

Computer-aided Abnormality Detection in Chest Radiographs in a Clinical Setting via Domain-adaptation

Deep learning (DL) models are being deployed at medical centers to aid radiologists for diagnosis of lung conditions from chest radiographs. Such models are often trained on a large volume of publicly available labeled radiographs. These pre-trained DL models’ ability to generalize in clinical settings is poor because of the changes in data distributions between publicly available and privately held radiographs. In chest radiographs, the heterogeneity in distributions arises from the diverse conditions in X-ray equipment and their configurations used for generating the images. In the machine learning community, the challenges posed by the heterogeneity in the data generation source is known as domain shift, which is a mode shift in the generative model. In this work, we introduce a domain-shift detection and removal method to overcome this problem. Our experimental results show the proposed method’s effectiveness in deploying a pre-trained DL model for abnormality detection in chest radiographs in a clinical setting.

Dubey, Abhishek↗

Analytical and experimental investigation of a 1/8-scale dynamic model of the shuttle orbiter. Volume 1: Summary report

A 1/8-scale structural dynamics model of the space shuttle orbiter was analyzed using the NASA Structural Analysis System (NASTRAN). Comparison of the calculated eigenvalues with preliminary test data for the unrestrained condition indicate that the analytical model was consistently stiffer, being about 20% higher in the first mode. The eigenvectors show reasonably good agreement with test data. A series of analytical and experimental investigations undertaken to resolve the discrepancy are described. Modifications in the NASTRAN model based upon these investigations resulted in close agreement for both eigenvalues and eigenvectors.

Mason, P. W.↗

Wind tunnel investigation of rotor lift and propulsive force at high speed: Data analysis

The basic test data obtained during the lift-propulsive force limit wind tunnel test conducted on a scale model CH-47b rotor are analyzed. Included are the rotor control positions, blade loads and six components of rotor force and moment, corrected for hub tares. Performance and blade loads are presented as the rotor lift limit is approached at fixed levels of rotor propulsive force coefficients and rotor tip speeds. Performance and blade load trends are documented for fixed levels of rotor lift coefficient as propulsive force is increased to the maximum obtainable by the model rotor. Test data is also included that defines the effect of stall proximity on rotor control power. The basic test data plots are presented in volumes 2 and 3.

Mchugh, F.↗

Analysis of wind tunnel test results for a 9.39-per cent scale model of a VSTOL fighter/attack aircraft. Volume 2: Evaluation of prediction methodologies

An evaluation of current prediction methodologies to estimate the aerodynamic uncertainties identified for the E205 configuration is presented. This evaluation was accomplished by comparing predicted and wind tunnel test data in three major categories: untrimmed longitudinal aerodynamics; trimmed longitudinal aerodynamics; and lateral-directional aerodynamic characteristics.

Lummus, J. R.↗

Fatigue life prediction of an intermetallic matrix composite at elevated temperatures

A strain-based fatigue life prediction method is proposed for an intermetallic matrix composite (IMC) under tensile cyclic loadings at elevated temperatures. Styled after the Universal Slopes method, the model utilizes the composite's tensile properties to estimate fatigue life. Factors such as fiber volume ratio, number of plys and temperature dependence are implicitly incorporated into the model through these properties. The model constants are determined by using unidirectional fatigue data at temperatures of 425 and 815 C. Fatigue lives from two independent sources are used to verify the model at temperatures of 650 and 760 C. Cross-ply lives at 760 C are also predicted. It is demonstrated that the correlation between experimental and predicted lives is within a factor of two.

Bartolotta, Paul A.↗

Turbulence and stall in plane diffusers - Computational study

The effect of free-stream turbulence level on stall conditions in plane diffusers is investigated with a finite-volume numerical method which utilizes a k-epsilon turbulence model or a differential Reynolds stress model for closure. Computed results show qualitative agreement with measured data. The ability to eliminate stall and thereby increase pressure recovery in diffusers at large included angles by utilizing high free-stream turbulence is correctly predicted.

Demuren, A. O.↗

Interaction of the terrestrial and atmospheric hydrological cycles in the context of the North American southwest summer monsoon

Work under this grant has used information on precipitation and water vapor fluxes in the area of the Mexican Monsoon to analyze the regional precipitation climatology, to understand the nature of water vapor transport during the monsoon using model and observational data, and to analyze the ability of the TRMM remote sensing algorithm to characterize precipitation. An algorithm for estimating daily surface rain volumes from hourly GOES infrared images was developed and compared to radar data. Estimates were usually within a factor of two, but different linear relations between satellite reflectances and rainfall rate were obtained for each day, storm type and storm development stage. This result suggests that using TRMM sensors to calibrate other satellite IR will need to be a complex process taking into account all three of the above factors. Another study, this one of the space-time variability of the Mexican Monsoon, indicate that TRMM will have a difficult time, over the course of its expected three year lifetime, identifying the diurnal cycle of precipitation over monsoon region. Even when considering monthly rainfalls, projected satellite estimates of August rainfall show a root mean square error of 38 percent. A related examination of spatial variability of mean monthly rainfall using a novel method for removing the effects of elevation from gridded gauge data, show wide variation from a satellite-based rainfall estimates for the same time and space resolution. One issue addressed by our research, relating to the basic character of the monsoon circulation, is the determination of the source region for moisture. The monthly maps produced from our study of monsoon variability show the presence of two rainfall maxima in the analysis normalized to sea level, one in south-central Arizona associated with the Mexican monsoon maximum and one in southeastern New Mexico associated with the Gulf of Mexico. From the point of view of vertically-integrated fluxes and flux divergence of water vapor from ECMWF data, most moisture at upper levels arrives from the Gulf of Mexico, while low level moisture comes from the northern Gulf of California. Composites of ECMWF analyses for wet and dry periods (classified by rain gauge data) show that both regimes show low level moisture arriving from northern and central Gulf of California. Above 700 MB, moisture comes from both source regions and the Sierra Madre Occidental. During wet periods a longer fetch through the moist air mass above western Mexico results in a greater moisture flux into the Sonoran Desert region, while there is less moisture from the Gulf of Mexico both above and below 700 mb. Work on the grant subcontract at the University of Colorado concentrated on the development of a technique useful to TRMM combining visible, infrared and passive microwave data for measuring precipitation. Two established techniques using either visible or infrared data applied over the US Southwest correlated with gauges at the 0.58 to 0.70 level. The application of some established passive microwave techniques were less successful for a variety of reason, including problems in both the gauge and satellite data quality, sampling problems and weaknesses inherent in the algorithms themselves. A more promising solution for accurate rainfall estimation was explored using visible and infrared data to perform a cloud classification, which when combined with information about the background (e.g. Iand/ocean), was used to select the most appropriate microwave algorithm from a suite of possibilities.

Dickinson, Robert E.↗

SAVS: A Space and Atmospheric Visualization Science system

The research environment faced by space and atmospheric scientists in the 1990s is characterized by unprecedented volumes of new data, by ever-increasing repositories of unexploited mission files, and by the widespread use of empirical and large-scale computational models needed for the synthesis of understanding across data sets and discipline boundaries. The effective analysis and interpretation of such massive amounts of information have become the subjects of legitimate concern. With SAVS (a Space and Atmospheric Visualization Science System), we address these issues by creating a 'push-button' software environment that mimics the logical scientific processes in data acquisition, reduction, and analysis without requiring a detailed understanding of the methods, networks, and modules that link the tools and effectively execute the functions. SAVS provides (1) a customizable framework for accessing a powerful set of visualization tools based on the popular AVS visualization software with hooks to PV-Wave and access to Khoros modules, (2) a set of mathematical and statistical tools, (3) an extensible library of discipline-specific functions and models (e.g., MSIS, IRI, Feldstein Oval, IGRF, satellite tracking with CADRE-3, etc.), and (4) capabilities for local and remote data base access. The system treats scalar, vector, and image data, and runs on most common Unix workstations. We present a description of SAVS and its components, followed by several applications based on generic research interests in interplanetary and magnetospheric physics (IMP/ISTP), active experiments in space (CRRES), and mission planning focused on the Earth's thermospheric, ionospheric, and mesospheric domains (TIMED).

Szuszczewicz, E. P.↗

Fifth NASA Goddard Conference on Mass Storage Systems and Technologies.

This document contains copies of those technical papers received in time for publication prior to the Fifth Goddard Conference on Mass Storage Systems and Technologies. As one of an ongoing series, this conference continues to serve as a unique medium for the exchange of information on topics relating to the ingestion and management of substantial amounts of data and the attendant problems involved. This year's discussion topics include storage architecture, database management, data distribution, file system performance and modeling, and optical recording technology. There will also be a paper on Application Programming Interfaces (API) for a Physical Volume Repository (PVR) defined in Version 5 of the Institute of Electrical and Electronics Engineers (IEEE) Reference Model (RM). In addition, there are papers on specific archives and storage products.

Kobler, Benjamin↗

Fifth NASA Goddard Conference on Mass Storage Systems and Technologies

This document contains copies of those technical papers received in time for publication prior to the Fifth Goddard Conference on Mass Storage Systems and Technologies held September 17 - 19, 1996, at the University of Maryland, University Conference Center in College Park, Maryland. As one of an ongoing series, this conference continues to serve as a unique medium for the exchange of information on topics relating to the ingestion and management of substantial amounts of data and the attendant problems involved. This year's discussion topics include storage architecture, database management, data distribution, file system performance and modeling, and optical recording technology. There will also be a paper on Application Programming Interfaces (API) for a Physical Volume Repository (PVR) defined in Version 5 of the Institute of Electrical and Electronics Engineers (IEEE) Reference Model (RM). In addition, there are papers on specific archives and storage products.

Kobler, Benjamin↗

Effective Thermal Conductivity of an Aluminum Foam + Water Two Phase System

This study examined the effect of volume fraction and pore size on the effective thermal conductivity of an aluminum foam and water system. Nine specimens of aluminum foam representing a matrix of three volume fractions (4-8% by vol.) and three pore sizes (2-4 mm) were tested with water to determine relationships to the effective thermal conductivity. It was determined that increases in volume fraction of the aluminum phase were correlated to increases in the effective thermal conductivity. It was not statistically possible to prove that changes in pore size of the aluminum foam correlated to changes in the effective thermal conductivity. However, interaction effects between the volume fraction and pore size of the foam were statistically significant. Ten theoretical models were selected from the published literature to compare against the experimental data. Models by Asaad, Hadley, and de Vries provided effective thermal conductivity predictions within a 95% confidence interval.

Moskito, John↗

Coupled-Circulation-Chemistry Studies with the Finite-Volume CCM: Trace Gas Transport in the Tropopause Region

A joint project between the Data Assimilation Office at NASA GSFC and NCAR involves linking the physical packages from the Community Climate Model (CCM) with the flux-form semi-Lagrangian dynamical core developed by Lin and Rood in the DAO. A further development of this model includes the implementation of a chemical package developed by Douglass and colleagues in the Atmospheric Chemistry and Dynamics Branch at NASA GSFC. Results from this coupled dynamics-radiation-chemistry model will be presented, focussing on trace gas transport in the tropopause region.

Pawson, Steven↗