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At least 847 records · Page 47

Advances in Genes-Encoding Transporters for Cadmium Uptake, Translocation, and Accumulation in Plants

Cadmium (Cd) is a heavy metal that is highly toxic for plants, animals, and human beings. A better understanding of the mechanisms involved in Cd accumulation in plants is beneficial for developing strategies for either the remediation of Cd-polluted soils using hyperaccumulator plants or preventing excess Cd accumulation in the edible parts of crops and vegetables. As a ubiquitous heavy metal, the transport of Cd in plant cells is suggested to be mediated by transporters for essential elements such as Ca, Zn, K, and Mn. Identification of the genes encoding Cd transporters is important for understanding the mechanisms underlying Cd uptake, translocation, and accumulation in either crop or hyperaccumulator plants. Recent studies have shown that the transporters that mediate the uptake, transport, and accumulation of Cd in plants mainly include members of the natural resistance-associated macrophage protein (Nramp), heavy metal-transporting ATPase (HMA), zinc and iron regulated transporter protein (ZIP), ATP-binding cassette (ABC), and yellow stripe-like (YSL) families. Here, we review the latest advances in the research of these Cd transporters and lay the foundation for a systematic understanding underlying the molecular mechanisms of Cd uptake, transport, and accumulation in plants.

59 BASIC BIOLOGICAL SCIENCES↗

Gravitational Fluctuations as an Alternative to Inflation III. Numerical Results

Power spectra play an important role in the theory of inflation, and their ability to reproduce current observational data to high accuracy is often considered a triumph of inflation, largely because of a lack of credible alternatives. In previous work we introduced an alternative picture for the cosmological power spectra based on the nonperturbative features of the quantum version of Einstein’s gravity, instead of currently popular inflation models based on scalar fields. The key ingredients in this new picture are the appearance of a nontrivial gravitational vacuum condensate (directly related to the observed cosmological constant), and a calculable renormalization group running of Newton’s G on cosmological scales. More importantly, one notes the absence of any fundamental scalar fields in this approach. Results obtained previously were largely based on a semi-analytical treatment, and thus, while generally transparent in their implementation, often suffered from the limitations of various approximations and simplifying assumptions. In this work, we extend and refine our previous calculations by laying out an updated and extended analysis, which now utilizes a set of suitably modified state-of-the-art numerical programs (ISiTGR, MGCAMB and MGCLASS) developed for observational cosmology. As a result, we are able to remove some of the approximations employed in our previous studies, leading to a number of novel and detailed physical predictions. These should help in potentially distinguishing the vacuum condensate picture of quantum gravity from that of other models such as scalar field inflation. Here, besides the matter power spectrum P m (k) , we work out, in detail, predictions for what are referred to as the TT, TE, EE, BB angular spectra, as well as their closely related lensing spectra. However, the current limited precision of observational data today (especially on large angular scales) does not allow us yet to clearly prove or disprove either set of ideas. Nevertheless, by exploring in more details the relationship between gravity and cosmological matter and radiation both analytically and numerically, together with an expected future influx of increasingly accurate observational data, one can hope that the new quantum gravitational picture can be subjected to further stringent tests in the near future.

79 ASTRONOMY AND ASTROPHYSICS↗

Structure and Antigenicity of the Porcine Astrovirus 4 Capsid Spike

Porcine astrovirus 4 (PoAstV4) has been recently associated with respiratory disease in pigs. In order to understand the scope of PoAstV4 infections and to support the development of a vaccine to combat PoAstV4 disease in pigs, we designed and produced a recombinant PoAstV4 capsid spike protein for use as an antigen in serological assays and for potential future use as a vaccine antigen. Structural prediction of the full-length PoAstV4 capsid protein guided the design of the recombinant PoAstV4 capsid spike domain expression plasmid. The recombinant PoAstV4 capsid spike was expressed in Escherichia coli, purified by affinity and size-exclusion chromatography, and its crystal structure was determined at 1.85 Å resolution, enabling structural comparisons to other animal and human astrovirus capsid spike structures. The recombinant PoAstV4 capsid spike protein was also used as an antigen for the successful development of a serological assay to detect PoAstV4 antibodies, demonstrating that the recombinant PoAstV4 capsid spike retains antigenic epitopes found on the native PoAstV4 capsid. These studies lay a foundation for seroprevalence studies and the development of a PoAstV4 vaccine for swine.

Virology↗

In Vivo Entombment of Bacteria and Fungi during Calcium Oxalate, Brushite, and Struvite Urolithiasis

Human kidney stones form via repeated events of mineral precipitation, partial dissolution, and reprecipitation, which are directly analogous to similar processes in other natural and manmade environments, where resident microbiomes strongly influence biomineralization. High-resolution microscopy and high-fidelity metagenomic (microscopy-to-omics) analyses, applicable to all forms of biomineralization, have been applied to assemble definitive evidence of in vivo microbiome entombment during urolithiasis. Stone fragments were collected from a randomly chosen cohort of 20 patients using standard percutaneous nephrolithotomy (PCNL). Fourier transform infrared (FTIR) spectroscopy indicated that 18 of these patients were calcium oxalate (CaOx) stone formers, whereas one patient formed each formed brushite and struvite stones. This apportionment is consistent with global stone mineralogy distributions. Stone fragments from seven of these 20 patients (five CaOx, one brushite, and one struvite) were thin sectioned and analyzed using brightfield (BF), polarization (POL), confocal, super-resolution autofluorescence (SRAF), and Raman techniques. DNA from remaining fragments, grouped according to each of the 20 patients, were analyzed with amplicon sequencing of 16S rRNA gene sequences (V1–V3, V3–V5) and internal transcribed spacer (ITS1, ITS2) regions. Bulk-entombed DNA was sequenced from stone fragments in 11 of the 18 patients who formed CaOx stones, and the patients who formed brushite and struvite stones. These analyses confirmed the presence of an entombed low-diversity community of bacteria and fungi, including Actinobacteria, Bacteroidetes, Firmicutes, Proteobacteria, and Aspergillus niger. Bacterial cells approximately 1 μm in diameter were also optically observed to be entombed and well preserved in amorphous hydroxyapatite spherules and fans of needle-like crystals of brushite and struvite. In conclusion, these results indicate a microbiome is entombed during in vivo CaOx stone formation. Similar processes are implied for brushite and struvite stones. This evidence lays the groundwork for future in vitro and in vivo experimentation to determine how the microbiome may actively and/or passively influence kidney stone biomineralization.

59 BASIC BIOLOGICAL SCIENCES↗

A Mystery in Chamaeleon: Serendipitous Discovery of a Galactic Symbiotic Nova

We present the serendipitous discovery of a low optical-luminosity nova occurring in a D-type symbiotic binary star system in the Milky Way. We lay out the extensive archival data alongside new follow-up observations related to the stellar object CN Cha in the constellation of Chamaeleon. The object had long period (250 days), high amplitude (3 mag) optical variability in its recent past, preceding an increase in optical brightness by 8 magnitudes and a persistence at this brightness for about 3 yr, followed by a period of 1.4 mag yr{sup −1} dimming. The object’s current optical luminosity seems to be dominated by Hα emission, which also exhibits blueshifted absorption (a P-Cygni-like profile). After consideration of a number of theories to explain these myriad observations, we determine that CN Cha is most likely a symbiotic (an evolved-star–white-dwarf binary) system that has undergone a long-duration, low optical brightness, nova, placing it squarely in the class of so-called “slow novae,” of which there are only a few known examples. The duration of the optical plateau in CN Cha would make it the shortest timescale plateau of any known slow symbiotic novae.

79 ASTRONOMY AND ASTROPHYSICS↗

Optical Transmission Spectroscopy of the Terrestrial Exoplanet LHS 3844b from 13 Ground-based Transit Observations

Atmospheric studies of spectroscopically accessible terrestrial exoplanets lay the groundwork for comparative planetology between these worlds and the solar system terrestrial planets. LHS 3844b is a highly irradiated terrestrial exoplanet (R = 1.303 ± 0.022R {sub ⊕}) orbiting a mid-M dwarf 15 parsecs away. Work based on near-infrared Spitzer phase curves ruled out atmospheres with surface pressures ≥10 bars on this planet. We present 13 transit observations of LHS 3844b taken with the Magellan Clay telescope and the LDSS3C multi-object spectrograph covering 620–1020 nm. We analyze each of the 13 data sets individually using a Gaussian process regression, and present both white and spectroscopic light curves. In the combined white light curve we achieve an rms precision of 65 ppm when binning to 10 minutes. The mean white light-curve value of (R {sub p}/R {sub s}){sup 2} is 0.4170 ± 0.0046%. To construct the transmission spectrum, we split the white light curves into 20 spectrophotometric bands, each spanning 20 nm, and compute the mean values of (R {sub p}/R {sub s}){sup 2} in each band. We compare the transmission spectrum to two sets of atmospheric models. We disfavor a clear, solar composition atmosphere (μ = 2.34) with surface pressures ≥0.1 bar to 5.2σ confidence. We disfavor a clear, H{sub 2}O steam atmosphere (μ = 18) with surface pressures ≥0.1 bar to low confidence (2.9σ). Our observed transmission spectrum favors a flat line. For solar composition atmospheres with surface pressures ≥1 bar we rule out clouds with cloud-top pressures of 0.1 bar (5.3σ), but we cannot address high-altitude clouds at lower pressures. Our results add further evidence that LHS 3844b is devoid of an atmosphere.

79 ASTRONOMY AND ASTROPHYSICS↗

Spectral Energy Distributions for 258 Local Volume Galaxies

We present model spectral energy distribution (SED) fits to ultraviolet/optical/infrared observations for the 258 nearby galaxies in the Local Volume Legacy survey, a sample dominated by lower-luminosity dwarf irregular systems. The data for each galaxy include up to 26 spatially-integrated broadband and narrowband fluxes from the Galaxy Evolution Explorer, Spitzer Space Telescope, and Infrared Astronomical Satellite space-based platforms, and from the Sloan Digital Sky Survey, Two Micron All Sky Survey, and other ground-based efforts. The CIGALE SED fitting package is employed using a delayed star-formation history with an optional late burst or quenching episode to constrain 11 different free parameters that characterize the properties of each galaxy's stellar and dust emission, with the overriding constraint that the ultraviolet/optical emission absorbed by interstellar dust grains is emitted in equal energy portions at infrared wavelengths. The main results are: (i) 94% of the SED fits yield reduced χ 2 values less than 3; (ii) the modeled stellar masses agree with those derived from 3.6 μm-based measures with a scatter of 0.07 dex; (iii) for a typical galaxy in the sample the SED-derived star-formation rate averaged over the past 100 Myr is about 88% of the value derived from standard hybrid indicators on similar timescales; and (iv) there is a statistically significant inverse relation between the stellar mass fraction appearing in the late burst and the total stellar mass. These results build upon prior SED modeling efforts in the local volume and lay the groundwork for future studies of more distant low-metallicity galaxies with JWST.

79 ASTRONOMY AND ASTROPHYSICS↗

Neural Networks for Nuclear Reactions in MAESTROeX

We demonstrate the use of neural networks to accelerate the reaction steps in the MAESTROeX stellar hydrodynamics code. A traditional MAESTROeX simulation uses a stiff ODE integrator for the reactions; here, we employ a ResNet architecture and describe details relating to the architecture, training, and validation of our networks. Our customized approach includes options for the form of the loss functions, a demonstration that the use of parallel neural networks leads to increased accuracy, and a description of a perturbational approach in the training step that robustifies the model. We test our approach on millimeter-scale flames using a single-step, 3-isotope network describing the first stages of carbon fusion occurring in Type Ia supernovae. We train the neural networks using simulation data from a standard MAESTROeX simulation, and show that the resulting model can be effectively applied to different flame configurations. This work lays the groundwork for more complex networks, and iterative time-integration strategies that can leverage the efficiency of the neural networks.

79 ASTRONOMY AND ASTROPHYSICS↗

Constraints on Cosmological Parameters with a Sample of Type Ia Supernovae from JWST

We investigate the potential of using a sample of very high-redshift (2 ≲ z ≲ 6) (VHZ) Type Ia supernovae (SNe Ia) attainable by JWST on constraining cosmological parameters. At such high redshifts, the age of the universe is young enough that the VHZ SN Ia sample comprises the very first SNe Ia of the universe, with progenitors among the very first generation of low-mass stars that the universe has made. We show that the VHZ SNe Ia can be used to disentangle systematic effects due to the luminosity distance evolution with redshifts intrinsic to SN Ia standardization. Assuming that the systematic evolution can be described by a linear or logarithmic formula, we found that the coefficients of this dependence can be determined accurately and decoupled from cosmological models. Systematic evolution as large as 0.15 mag and 0.45 mag out to z = 5 can be robustly separated from popular cosmological models for linear and logarithmic evolution, respectively. The VHZ SNe Ia will lay the foundation for quantifying the systematic redshift evolution of SN Ia luminosity distance scales. When combined with SN Ia surveys at comparatively lower redshifts, the VHZ SNe Ia allow for the precise measurement of the history of the expansion of the universe from z ~ 0 to the epoch approaching reionization.

79 ASTRONOMY AND ASTROPHYSICS↗

From Images to Dark Matter: End-to-end Inference of Substructure from Hundreds of Strong Gravitational Lenses

Abstract Constraining the distribution of small-scale structure in our universe allows us to probe alternatives to the cold dark matter paradigm. Strong gravitational lensing offers a unique window into small dark matter halos (<10 10 M ⊙ ) because these halos impart a gravitational lensing signal even if they do not host luminous galaxies. We create large data sets of strong lensing images with realistic low-mass halos, Hubble Space Telescope (HST) observational effects, and galaxy light from HST’s COSMOS field. Using a simulation-based inference pipeline, we train a neural posterior estimator of the subhalo mass function (SHMF) and place constraints on populations of lenses generated using a separate set of galaxy sources. We find that by combining our network with a hierarchical inference framework, we can both reliably infer the SHMF across a variety of configurations and scale efficiently to populations with hundreds of lenses. By conducting precise inference on large and complex simulated data sets, our method lays a foundation for extracting dark matter constraints from the next generation of wide-field optical imaging surveys.

79 ASTRONOMY AND ASTROPHYSICS↗

Disentangling the Black Hole Mass Spectrum with Photometric Microlensing Surveys

Abstract From the formation mechanisms of stars and compact objects to nuclear physics, modern astronomy frequently leverages surveys to understand populations of objects to answer fundamental questions. The population of dark and isolated compact objects in the Galaxy contains critical information related to many of these topics, but is only practically accessible via gravitational microlensing. However, photometric microlensing observables are degenerate for different types of lenses, and one can seldom classify an event as involving either a compact object or stellar lens on its own. To address this difficulty, we apply a Bayesian framework that treats lens type probabilistically and jointly with a lens population model. This method allows lens population characteristics to be inferred despite intrinsic uncertainty in the lens class of any single event. We investigate this method’s effectiveness on a simulated ground-based photometric survey in the context of characterizing a hypothetical population of primordial black holes (PBHs) with an average mass of 30 M ⊙ . On simulated data, our method outperforms current black hole (BH) lens identification pipelines and characterizes different subpopulations of lenses while jointly constraining the PBH contribution to dark matter to ≈25%. Key to robust inference, our method can marginalize over population model uncertainty. We find the lower mass cutoff for stellar origin BHs, a key observable in understanding the BH mass gap, particularly difficult to infer in our simulations. This work lays the foundation for cutting-edge PBH abundance constraints to be extracted from current photometric microlensing surveys.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Memoirs of Mass Accretion: Probing the Edges of Intracluster Light in Simulated Galaxy Clusters

The diffuse starlight extending throughout massive galaxy clusters, known as intracluster light (ICL), has the potential to be read as a memoir of mass accretion: informative, individual, and yet imperfect. Here, we combine dark-matter-only zoom-in simulations from the Symphony suite with the Nimbus “star-tagging” model of the stellar halo to assess how much information about the mass assembly of an individual galaxy cluster can be gleaned from idealized measurements of ICL outskirts. We show that the edges of a cluster’s stellar profile—the primary (R sp⋆,1 ) and secondary (R sp⋆,2 ) stellar “splashback” radii—are sensitive to both continuous mass accretion histories (MAHs) and discrete merger events, making them potentially powerful probes of a cluster’s past. We find that R sp⋆,1 strongly correlates with the cluster’s mass ∼1 dynamical time ago, while R sp⋆,2 traces more recent MAH to a slightly lesser degree. In combination, these features can further distinguish between clusters that have and have not undergone a major merger within the past dynamical time. We use both to predict realistic cluster MAHs with the MultiCAM framework. These outer ICL features are significantly more sensitive to mass accretion and merger histories than the stellar mass gap and halo concentration, and perform comparably to the commonly used X-ray-based tracer of relaxedness, x off . While our analysis is idealized, the relevant ICL features are potentially detectable in next-generation deep imaging of nearby clusters. This work highlights the promise of ICL measurements and lays the groundwork for more detailed forecasts of their power.

79 ASTRONOMY AND ASTROPHYSICS↗

Inhibition of the C1s Protease and the Classical Complement Pathway by 6-(4-Phenylpiperazin-1-yl)Pyridine-3-Carboximidamide and Chemical Analogs

Abstract The classical pathway (CP) is a potent mechanism for initiating complement activity and is a driver of pathology in many complement-mediated diseases. The CP is initiated via activation of complement component C1, which consists of the pattern recognition molecule C1q bound to a tetrameric assembly of proteases C1r and C1s. Enzymatically active C1s provides the catalytic basis for cleavage of the downstream CP components, C4 and C2, and is therefore an attractive target for therapeutic intervention in CP-driven diseases. Although an anti-C1s mAb has been Food and Drug Administration approved, identifying small-molecule C1s inhibitors remains a priority. In this study, we describe 6-(4-phenylpiperazin-1-yl)pyridine-3-carboximidamide (A1) as a selective, competitive inhibitor of C1s. A1 was identified through a virtual screen for small molecules that interact with the C1s substrate recognition site. Subsequent functional studies revealed that A1 dose-dependently inhibits CP activation by heparin-induced immune complexes, CP-driven lysis of Ab-sensitized sheep erythrocytes, CP activation in a pathway-specific ELISA, and cleavage of C2 by C1s. Biochemical experiments demonstrated that A1 binds directly to C1s with a K d of ∼9.8 μM and competitively inhibits its activity with an inhibition constant (K i) of ∼5.8 μM. A 1.8-Å-resolution crystal structure revealed the physical basis for C1s inhibition by A1 and provided information on the structure–activity relationship of the A1 scaffold, which was supported by evaluating a panel of A1 analogs. Taken together, our work identifies A1 as a new class of small-molecule C1s inhibitor and lays the foundation for development of increasingly potent and selective A1 analogs for both research and therapeutic purposes.

Immunology↗

Closed-loop control of active nematic flows

Stabilizing and shaping autonomous flows of active fluids is a fundamental challenge and a prerequisite for applications. We embed a light-responsive microtubule-based nematic in a proportional-integral control loop that adjusts the applied light intensity in response to real-time measurements of the spatially averaged flow speed. The self-regulating hardware/software/wetware system maintains a target flow speed against external or internal perturbations, including protein aging and aggregation, sample-to-sample variability, and temperature variation. Varying the controller’s gains reveals antagonistic roles between feedback and intrinsic processes, leading to nontrivial dynamics observed in fluctuation spectra. In particular, oscillations emerge from the interplay between the controller, motor binding kinetics, and active hydrodynamic relaxation. Accounting for the underlying binding timescale, our coarse-grained model and nematohydrodynamics simulations corroborate these observations. This work provides insight into the coupled dynamics of controlled active matter, laying the foundation for spatiotemporal patterning of active stress to generate and stabilize new dynamical configurations.

Nishiyama, Katsu [Brandeis Univ., Waltham, MA (Uni↗

Physics Prospects for a near-term Proton-Proton Collider

Hadron colliders at the energy frontier offer significant discovery potential through precise measurements of Standard Model processes and direct searches for new particles and interactions. A future hadron collider would enhance the exploration of particle physics at the electroweak scale and beyond, potentially uniting the community around a common project. The LHC has already demonstrated precision measurement and new physics search capabilities well beyond its original design goals and the HL-LHC will continue to usher in new advancements. This document highlights the physics potential of an FCC-hh machine to directly follow the HL-LHC. In order to reduce the timeline and costs, the physics impact of lower collider energies, down to $\sim 50$~TeV, is evaluated. Lower centre-of-mass energy could leverage advanced magnet technology to reduce both the cost and time to the next hadron collider. Such a machine offers a breadth of physics potential and would make key advancements in Higgs measurements, direct particle production searches, and high-energy tests of Standard Model processes. Most projected results from such a hadron-hadron collider are superior to or competitive with other proposed accelerator projects and this option offers unparalleled physics breadth. The FCC program should lay out a decision-making process that evaluates in detail options for proceeding directly to a hadron collider, including the possibility of reducing energy targets and staging the magnet installation to spread out the cost profile.

FOS: Physical sciences↗

Twinac: A Universal Framework for Virtual Accelerator Controls

We propose a universal framework for a system of virtual accelerator controls (Twinac), a standard toolkit for research institutions to design, maintain, and use a real-time, end-to-end "digital twin" of their particle accelerator facility. This virtual counterpart will mirror any physical accelerator to provide (1) predictive maintenance; (2) surveillance of hidden environmental factors, such as seasonal temperature variations, which could impact performance of power supplies, magnets, and other instruments; and (3) a capability to model novel ways to operate the accelerator without risking equipment damage. Twinac is envisioned as accelerator facility agnostic, allowing institutions to share and reuse myriad simulation approaches (analytics-based, A.I.-driven, or combinations of the like) across facilities. The Twinac system lays the groundwork for a collaborative network of institutions to maintain and update this shared virtual accelerator technology.

Miceli, Tia M. [Fermilab] (ORCID:0000000265577789)↗

Modeling Temperature Profiles in the Pedestal of NSTX with Reduced Models

This paper describes new modeling capabilities for predicting H-mode pedestal profiles in spherical tokamaks. Temperature profiles for NSTX discharges 132543 and 132588 are modeled by coupling the \textsc{astra} transport solver with neoclassical transport and gyrokinetic-based reduced models for electron temperature gradient (ETG) and kinetic ballooning mode (KBM) instabilities. A quasi-linear surrogate model for ion-scale transport is developed using linear \textsc{gene} simulations, requiring only a single free parameter calibrated to one discharge. Time-evolving the temperatures with fixed density yields good agreement with experiments for both discharges. Systematic analysis of the transport mechanisms reveals that neoclassical transport is huge across the entire pedestal region for the ion channel. ETG turbulence is large in the plasma edge and low density gradient region, contributing substantially to the electron channel. However, KBM/MHD-like modes also drive significant transport in both the ion and electron thermal channels, making them essential for accurate pedestal modeling. Further refinements, including explicit E×B shear suppression and scaled ETG transport, produce quantitative but not qualitative improvements. This work lays the foundation for predictive modeling of future devices. This paper is on arxiv and has been submitted to Nuclear Fusion.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

High sensitivity of simulated fog properties to parameterized aerosol activation in case studies from ParisFog

Aerosols influence fog properties such as visibility and lifetime by affecting fog droplet number concentrations (N d ). Numerical weather prediction (NWP) models often represent aerosol–fog interactions using highly simplified approaches. Incorporating prognostic size-resolved aerosol microphysics from climate models could allow them to simulate N d and aerosol–fog interactions without incurring excessive computational expense. However, microphysics code designed for coarse spatial resolution may struggle with sub-kilometer-scale grid spacings. Here, we test the ability of the UK Met Office Unified Model to simulate aerosol and fog properties during case studies from the ParisFog field campaign in 2011. We examine the sensitivity of fog properties to variations in N d caused by modifications to simulated aerosol activation. Our model, with a 500 m horizontal resolution and interactive aerosol and cloud microphysics, significantly underpredicts N d , although it only slightly underestimates the cloud condensation nuclei concentration. With an updated version of the Abdul-Razzak and Ghan (2000) activation scheme, we produce N d that are more consistent with those predicted by a cloud parcel model under fog-like conditions. We activate droplets only by adiabatic cooling. We incorporate more realistic hygroscopicities for sulfate and organic aerosols and explore the sensitivity of simulated N d to unresolved updrafts. We find that both N d and simulated fog liquid water content are very sensitive to the updated activation scheme but remain less affected by the update to hygroscopicities. Our improvements offer insights into the physical processes regulating N d in stable conditions, potentially laying foundations for improved operational fog forecasts that incorporate interactive aerosol simulations or aerosol climatologies.

Ghosh, Pratapaditya [Carnegie Mellon University, P↗