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At least 847 records · Page 47

A DYNAMIC DENSITY FUNCTIONAL THEORY APPROACH TO DIFFUSION IN WHITE DWARFS AND NEUTRON STAR ENVELOPES

We develop a multicomponent hydrodynamic model based on moments of the Born–Bogolyubov–Green–Kirkwood–Yvon hierarchy equations for physical conditions relevant to astrophysical plasmas. These equations incorporate strong correlations through a density functional theory closure, while transport enters through a relaxation approximation. This approach enables the introduction of Coulomb coupling correction terms into the standard Burgers equations. The diffusive currents for these strongly coupled plasmas is self-consistently derived. The settling of impurities and its impact on cooling can be greatly affected by strong Coulomb coupling, which we show can be quantified using the direct correlation function.

79 ASTRONOMY AND ASTROPHYSICS↗

A Fast and Accurate Method of Radiation Hydrodynamics Calculation in Spherical Symmetry

We develop a new numerical scheme for solving the radiative transfer equation in a spherically symmetric system. This scheme does not rely on any kind of diffusion approximation, and it is accurate for optically thin, thick, and intermediate systems. In the limit of a homogeneously distributed extinction coefficient, our method is very accurate and exceptionally fast. We combine this fast method with a slower but more generally applicable method to describe realistic problems. We perform various test calculations, including a simplified protostellar collapse simulation. We also discuss possible future improvements.

79 ASTRONOMY AND ASTROPHYSICS↗

Numerical simulation of conservation laws

A new numerical framework for solving conservation laws is being developed. This new approach differs substantially from the well established methods, i.e., finite difference, finite volume, finite element and spectral methods, in both concept and methodology. The key features of the current scheme include: (1) direct discretization of the integral forms of conservation laws, (2) treating space and time on the same footing, (3) flux conservation in space and time, and (4) unified treatment of the convection and diffusion fluxes. The model equation considered in the initial study is the standard one dimensional unsteady constant-coefficient convection-diffusion equation. In a stability study, it is shown that the principal and spurious amplification factors of the current scheme, respectively, are structurally similar to those of the leapfrog/DuFort-Frankel scheme. As a result, the current scheme has no numerical diffusion in the special case of pure convection and is unconditionally stable in the special case of pure diffusion. Assuming smooth initial data, it will be shown theoretically and numerically that, by using an easily determined optimal time step, the accuracy of the current scheme may reach a level which is several orders of magnitude higher than that of the MacCormack scheme, with virtually identical operation count.

Chang, Sin-Chung↗

From stochastic processes to numerical methods: A new scheme for solving reaction subdiffusion fractional partial differential equations

We have introduced a new explicit numerical method, based on a discrete stochastic process, for solving a class of fractional partial differential equations that model reaction subdiffusion. The scheme is derived from the master equations for the evolution of the probability density of a sum of discrete time random walks. We show that the diffusion limit of the master equations recovers the fractional partial differential equation of interest. This limiting procedure guarantees the consistency of the numerical scheme. The positivity of the solution and stability results are simply obtained, provided that the underlying process is well posed. We also show that the method can be applied to standard reaction–diffusion equations. This work highlights the broader applicability of using discrete stochastic processes to provide numerical schemes for partial differential equations, including fractional partial differential equations.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Smoothed Particle Hydrodynamics and its applications for multiphase flow and reactive transport in porous media

Smoothed Particle Hydrodynamics (SPH) is a Lagrangian method based on a meshless discretization of partial differential equations. In this review, we present SPH discretization of the Navier-Stokes and Advection-Diffusion-Reaction equations, implementation of various boundary conditions, and time integration of the SPH equations, and we discuss applications of the SPH method for modeling pore-scale multiphase flows and reactive transport in porous and fractured media.

Tartakovsky, Alexandre M.↗

Flux Equations for Osmotically Moderated Sorption–Diffusion Transport in Rigid Microporous Membranes

The development of non-aqueous reverse osmosis separations via the use of rigid microporous membrane materials suggests that flux equations originally developed for swellable polymeric membranes should be revisited. This paper demonstrates that the gradient of fractional occupancy of penetrant molecules within the micropores of the membrane is the driving force for permeation without requiring assumptions about pressure within the membrane. Flux equations are derived using both Fickian and Maxwell-Stefan approaches, and different behavior in the permeate flux versus upstream hydraulic pressure relationship is shown to arise as a result of differences in the loading dependence of the single component Maxwell-Stefan diffusivity. Molecular modeling results available in the literature and experimental data obtained from carbon molecular sieve (CMS) membranes showcase that these loading-dependent changes in the Maxwell-Stefan diffusivity are possible. This loading dependence is separated into three regimes: so-called “weak confinement” diffusion and “strong confinement” diffusion, both of which have been discussed at length in the literature, and a new “hybrid confinement” diffusion, which is introduced here. Furthermore, the separation mechanism of solvent molecules through a rigid bimodally microporous membrane is studied using xylene molecules passing through CMS membranes fabricated under different conditions as examples. Altogether, this study provides fundamental insight and guidance into osmotically-moderated sorption-diffusion transport of solvent molecules through rigid microporous membranes.

36 MATERIALS SCIENCE↗

Region-of-interest diffuse optical tomography system

Diffuse optical tomography (DOT) using near-infrared light is a promising tool for non-invasive imaging of deep tissue. This technique is capable of quantitative reconstruction of absorption (μ{sub a}) and scattering coefficient (μ{sub s}) inhomogeneities in the tissue. The rationale for reconstructing the optical property map is that the absorption coefficient variation provides diagnostic information about metabolic and disease states of the tissue. The aim of DOT is to reconstruct the internal tissue cross section with good spatial resolution and contrast from noisy measurements non-invasively. We develop a region-of-interest scanning system based on DOT principles. Modulated light is injected into the phantom/tissue through one of the four light emitting diode sources. The light traversing through the tissue gets partially absorbed and scattered multiple times. The intensity and phase of the exiting light are measured using a set of photodetectors. The light transport through a tissue is diffusive in nature and is modeled using radiative transfer equation. However, a simplified model based on diffusion equation (DE) can be used if the system satisfies following conditions: (a) the optical parameter of the inhomogeneity is close to the optical property of the background, and (b) μ{sub s} of the medium is much greater than μ{sub a} (μ{sub s} > > μ{sub a}). The light transport through a highly scattering tissue satisfies both of these conditions. A discrete version of DE based on finite element method is used for solving the inverse problem. The depth of probing light inside the tissue depends on the wavelength of light, absorption, and scattering coefficients of the medium and the separation between the source and detector locations. Extensive simulation studies have been carried out and the results are validated using two sets of experimental measurements. The utility of the system can be further improved by using multiple wavelength light sources. In such a scheme, the spectroscopic variation of absorption coefficient in the tissue can be used to arrive at the oxygenation changes in the tissue.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Nonlocal Kernel Network (NKN): a Stable and Resolution-Independent Deep Neural Network.

Neural operators have recently become popular tools for designing solution maps between function spaces in the form of neural networks. Differently from classical scientific machine learning approaches that learn parameters of a known partial differential equation (PDE) for a single instance of the input parameters at a fixed resolution, neural operators approximate the solution map of a family of PDEs [6, 7]. Despite their success, the uses of neural operators are so far restricted to relatively shallow neural networks and confined to learning hidden governing laws. In this work, we propose a novel nonlocal neural operator, which we refer to as nonlocal kernel network (NKN), that is resolution independent, characterized by deep neural networks, and capable of handling a variety of tasks such as learning governing equations and classifying images. Our NKN stems from the interpretation of the neural network as a discrete nonlocal diffusion reaction equation that, in the limit of infinite layers, is equivalent to a parabolic nonlocal equation, whose stability is analyzed via nonlocal vector calculus. The resemblance with integral forms of neural operators allows NKNs to capture long-range dependencies in the feature space, while the continuous treatment of node-to-node interactions makes NKNs resolution independent. The resemblance with neural ODEs, reinterpreted in a nonlocal sense, and the stable network dynamics between layers allow for generalization of NKN’s optimal parameters from shallow to deep networks. This fact enables the use of shallow-to-deep initialization techniques [8]. Our tests show that NKNs outperform baseline methods in both learning governing equations and image classification tasks and generalize well to different resolutions and depths.

97 MATHEMATICS AND COMPUTING↗

SU-E-T-270: Diffusion Synthetic Acceleration for Linear Boltzmann Transport Equation

Purpose: Linear Boltzmann transport equation (LBTE) is as accurate as the Monte Carlo method (MC) for dose calculation in photon/particle therapy (LBTE is a deterministic and Eulerian formulation and MC is a statistical and Lagrangian description). An advantage of LBTE is that numerous acceleration techniques can be utilized for acceleration. This work is to explore the acceleration of LBTE via diffusion synthetic acceleration (DSA). Methods: For simplicity, two-dimensional, steady-state, and within-group LBTE is considered with two angular dimensions and two spatial dimensions. The discrete ordinate method is developed for solving this integro-differential equation. The angular variables are discretized using a level-symmetric quadrature set on the unit sphere. The spatial variables are discretized on the structured grid based on the diamond scheme. The source-iteration method (SI) is used to solve the discretized system.Since SI is slow in optically thick and highly scattering regime. DSA is developed to accelerate SI. The motivation for DSA is that diffusion equation (DE) is a good approximation of LBTE in the above regime. However, DE is much cheaper than LBTE computationally since DE only involves spatial variables. Thus, in each DSA iteration, DSA adds to the SI step a computationally-negligible DE step, i.e., to first solve DE with the SI residual as source term, and then compensate the SI solution with DE solution. Results: DSA was benchmarked and compared with SI. The difference between two methods was within 0.12% which verifies the accuracy of DSA, while DSA demonstrated the great advantage in speed, e.g., the reduction of iteration number to 6% and 4% respectively for cases with 100 and 1,000 scattering-absorption ratio that commonly occur in clinical dose calculation. Conclusion: DSA has been developed as one of many possible means for accelerating the numerical solver of LBTE for dose calculation. The authors were partially supported by the NSFC (#11405105), the 973 Program (#2015CB856000) and the Shanghai Pujiang Talent Program (#14PJ1404500)

60 APPLIED LIFE SCIENCES↗

Nonlinear Diffusion Acceleration of the Least-Squares Transport Equation in Geometries with Voids

In this paper we show the extension of the Nonlinear-Diffusion Acceleration (NDA) to geometries containing small voids using a weighted least-squares (WLS) high order equation. Even though the WLS equation is well defined in voids, the low-order drift diffusion equation was not defined in materials with a zero cross section. This paper derives the necessary modifications to the NDA algorithm. We show that a small change to the NDA closure term and a non-local definition of the diffusion coefficient solve the problems for voids regions. These changes do not affect the algorithm for optical thick material regions, while making the algorithm well defined in optically thin ones. We use a Fourier analysis to perform an iterative analysis to confirm that the modifications result in a stable and efficient algorithm. Numerical results of our method will be presented in the second part of the paper. We test this formulation with a small, one-dimensional test problem. Additionally we present results for a modified version of the C5G7 benchmark containing voids as a more complex, reactor like problem. We compared our results to PDT, Texas A&M’s transport code, utilizing a first order discontinuous formulation as reference and the self-adjoint angular flux equation with void treatment (SAAFτ ), a different second order form. The results indicate, that the NDA WLS performed comparably or slightly worse then the asymmetric SAAFτ , while maintaining a symmetric discretization matrix.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Application of the Mixed-Mode Model for Numerical Simulation of Pearlitic Transformation

The multiscale model of pearlitic transformation, including the finite element solution of the second Fick’s equation with moving boundary in the microscale and Fourier equation in the macroscale, is presented in this paper. According to the mixed-mode approach, both the volume diffusion and the interface mobility were considered. Model describes sidewise and frontal growth of cementite and ferrite plates in a single grain of the austenite. Assessment of the possibility of the developed model application to determine the key parameters in terms of strength properties of pearlitic steel, i.e., pearlite grain size and colony size as well as interlamellar spacing for various cooling conditions, was the main aim of this work. The model was validated and verified on the basis of experimental tests performed for two eutectoid steels. In practice, developed model can support design process for a technology of high-strength rods and long products manufacturing. Rails were selected as a case study in this work, and therefore, numerical simulations of accelerated cooling of the rail head were performed and the relationship between the parameters of heat treatment, parameters of the structure and properties of the finished product was determined on the basis of obtained results.

36 MATERIALS SCIENCE↗

A high-order Lagrangian-decoupling method for the incompressible Navier-Stokes equations

A high-order Lagrangian-decoupling method is presented for the unsteady convection-diffusion and incompressible Navier-Stokes equations. The method is based upon: (1) Lagrangian variational forms that reduce the convection-diffusion equation to a symmetric initial value problem; (2) implicit high-order backward-differentiation finite-difference schemes for integration along characteristics; (3) finite element or spectral element spatial discretizations; and (4) mesh-invariance procedures and high-order explicit time-stepping schemes for deducing function values at convected space-time points. The method improves upon previous finite element characteristic methods through the systematic and efficient extension to high order accuracy, and the introduction of a simple structure-preserving characteristic-foot calculation procedure which is readily implemented on modern architectures. The new method is significantly more efficient than explicit-convection schemes for the Navier-Stokes equations due to the decoupling of the convection and Stokes operators and the attendant increase in temporal stability. Numerous numerical examples are given for the convection-diffusion and Navier-Stokes equations for the particular case of a spectral element spatial discretization.

Ho, Lee-Wing↗

Projecting diffusion along the normal bundle of a plane curve

The purpose of this paper is to provide new formulas for the effective diffusion coefficient of a generalized Fick-Jacob's equation obtained by projecting the two-dimensional diffusion equation along the normal directions of an arbitrary curve on the plane.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Some basic mathematical methods of diffusion theory

An introductory treatment of the fundamentals of diffusion theory is presented, starting with molecular diffusion and leading up to the statistical methods of turbulent diffusion. A multilayer diffusion model, designed to permit concentration and dosage calculations downwind of toxic clouds from rocket vehicles, is described. The concepts and equations of diffusion are developed on an elementary level, with emphasis on atmospheric applications.

Giere, A. C.↗

Stability of the Tonks–Langmuir discharge pre-sheath

The article formulates the stability problem of the plasma sheath in the Tonks–Langmuir discharge. Using the kinetic description of the ion gas, i.e., the stability of the potential shape in the quasi-neutral pre-sheath regarding the high and low frequency, the perturbations are investigated. The electrons are assumed to be Maxwell–Boltzmann distributed. Regarding high-frequency perturbations, the pre-sheath is shown to be stable. The stability problem regarding low-frequency perturbations can be reduced to an analysis of the “diffusion like” equation, which results in the instability of the potential distribution in the pre-sheath. By means of the Particle in Cell simulations, also the nonlinear stage of low frequency oscillations is investigated. Comparing the figure obtained with the figure for linear stage, one can find obvious similarity in the spatial-temporal behavior of the potential.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Particle acceleration via reconnection processes in the supersonic solar wind

An emerging paradigm for the dissipation of magnetic turbulence in the supersonic solar wind is via localized small-scale reconnection processes, essentially between quasi-2D interacting magnetic islands. Charged particles trapped in merging magnetic islands can be accelerated by the electric field generated by magnetic island merging and the contraction of magnetic islands. We derive a gyrophase-averaged transport equation for particles experiencing pitch-angle scattering and energization in a super-Alfvénic flowing plasma experiencing multiple small-scale reconnection events. A simpler advection-diffusion transport equation for a nearly isotropic particle distribution is derived. The dominant charged particle energization processes are (1) the electric field induced by quasi-2D magnetic island merging and (2) magnetic island contraction. The magnetic island topology ensures that charged particles are trapped in regions where they experience repeated interactions with the induced electric field or contracting magnetic islands. Steady-state solutions of the isotropic transport equation with only the induced electric field and a fixed source yield a power-law spectrum for the accelerated particles with index α = –(3 + M{sub A} )/2, where M{sub A} is the Alfvén Mach number. Considering only magnetic island contraction yields power-law-like solutions with index –3(1 + τ {sub c}/(8τ{sub diff})), where τ {sub c}/τ{sub diff} is the ratio of timescales between magnetic island contraction and charged particle diffusion. The general solution is a power-law-like solution with an index that depends on the Alfvén Mach number and the timescale ratio τ{sub diff}/τ {sub c}. Observed power-law distributions of energetic particles observed in the quiet supersonic solar wind at 1 AU may be a consequence of particle acceleration associated with dissipative small-scale reconnection processes in a turbulent plasma, including the widely reported c {sup –5} (c particle speed) spectra observed by Fisk and Gloeckler and Mewaldt et al.

79 ASTRONOMY AND ASTROPHYSICS↗

Combustion of hydrogen-air jets in local chemical equilibrium: A guide to the CHARNAL computer program

A guide to a computer program, written in FORTRAN 4, for predicting the flow properties of turbulent mixing with combustion of a circular jet of hydrogen into a co-flowing stream of air is presented. The program, which is based upon the Imperial College group's PASSA series, solves differential equations for diffusion and dissipation of turbulent kinetic energy and also of the R.M.S. fluctuation of hydrogen concentration. The effective turbulent viscosity for use in the shear stress equation is computed. Chemical equilibrium is assumed throughout the flow.

Spalding, D. B.↗

Constant-complexity stochastic simulation algorithm with optimal binning

At the molecular level, biochemical processes are governed by random interactions between reactant molecules, and the dynamics of such systems are inherently stochastic. When the copy numbers of reactants are large, a deterministic description is adequate, but when they are small, such systems are often modeled as continuous-time Markov jump processes that can be described by the chemical master equation. Gillespie’s Stochastic Simulation Algorithm (SSA) generates exact trajectories of these systems, but the amount of computational work required for each step of the original SSA is proportional to the number of reaction channels, leading to computational complexity that scales linearly with the problem size. The original SSA is therefore inefficient for large problems, which has prompted the development of several alternative formulations with improved scaling properties. We describe an exact SSA that uses a table data structure with event time binning to achieve constant computational complexity with respect to the number of reaction channels for weakly coupled reaction networks. We present a novel adaptive binning strategy and discuss optimal algorithm parameters. We compare the computational efficiency of the algorithm to existing methods and demonstrate excellent scaling for large problems. This method is well suited for generating exact trajectories of large weakly coupled models, including those that can be described by the reaction-diffusion master equation that arises from spatially discretized reaction-diffusion processes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗