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At least 847 records · Page 47

Development of an E. coli strain for one-pot biofuel production from ionic liquid pretreated cellulose and switchgrass

Biological production of chemicals and fuels using microbial transformation of sustainable carbon sources, such as pretreated and saccharified plant biomass, is a multi-step process. Typically, each segment of the workflow is optimized separately, often generating conditions that may not be suitable for integration or consolidation with the upstream or downstream steps. While significant effort has gone into developing solutions to incompatibilities at discrete steps, very few studies report the consolidation of the multi-step workflow into a single pot reactor system. Here we demonstrate a one-pot biofuel production process that uses the ionic liquid 1-ethyl-3-methylimidazolium acetate (C 2 C 1 Im][OAc] ) for pretreatment of switchgrass biomass. [C 2 C 1 Im][OAc] is highly effective in deconstructing lignocellulose, but nonetheless leaves behind residual reagents that are toxic to standard saccharification enzymes and the microbial production host. We report the discovery of an [C 2 C 1 Im]-tolerant E. coli strain, where [C 2 C 1 Im] tolerance is bestowed by a P7Q mutation in the transcriptional regulator encoded by rcdA. We establish that the causal impact of this mutation is the derepression of a hitherto uncharacterized major facilitator family transporter, YbjJ. To develop the strain for a one-pot process we engineered this [C 2 C 1 Im]-tolerant strain to express a recently reported d-limonene production pathway. We also screened previously reported [C 2 C 1 Im]-tolerant cellulases to select one that would function with the range of E. coli cultivation conditions and expressed it in the [C 2 C 1 Im]-tolerant E. coli strain so as to secrete this [C 2 C 1 Im]-tolerant cellulase. The final strain digests pretreated biomass, and uses the liberated sugars to produce the bio-jet fuel candidate precursor d-limonene in a one-pot process.

09 BIOMASS FUELS↗

Increased charge transfer state separation via reduced mixed phase interface in polymer solar cells

Investigations into bulk heterojunction organic solar cells have demonstrated that molecular mixing within domains and at interfaces significantly impacts device performance. However, these studies often use broad performance metrics that blur fundamental structure–function mechanisms – in particular the role of the mixed phase in charge generation versus charge extraction. In this work, we present a new analysis based on time-delayed collection field that separately quantifies each fundamental step in the charge generation process. Additionally, we present a novel resonant X-ray scattering analysis to quantify the state of the three-phase nanostructure (phase volumes and their compositions) as it exists in the devices. We find that in a model semicrystalline system, decreasing the mixed phase interface between pure donor and pure acceptor domains has little effect on the efficiency of charge transfer (CT) state formation but instead dramatically increases the efficiency of CT state separation. While charge extraction efficiencies are affected as well, this has only a minor impact on device performance. With both structure and properties quantitatively resolved for the first time on the exact same devices, we determine a simultaneous >99% (anti)correlation between (mixed)pure phase volume and charge separation efficiency, with values fitting well to an exponential saturation model. This result plus our ability to eliminate other possible contributing factors provides strong evidence of a causal relationship that reducing interfacial mixed phases to establish a steep energy gradient between pure phases aids in charge generation and extraction in organic solar cells.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Generation of ionic liquid tolerant Pseudomonas putida KT2440 strains via adaptive laboratory evolution

Although the use of ionic liquids (ILs) for the pretreatment of lignocellulosic biomass has been limited due to high costs, recent efforts to develop low-cost protic ILs show promise for achieving cost-effectiveness for biorefineries. However, an additional challenge remains in that ILs present in biomass hydrolysates are toxic to most microbial hosts, resulting in poor growth phenotypes. To address this issue, we applied an adaptive laboratory evolution (ALE) approach for tolerizing Pseudomonas putida KT2440, an industrially relevant bacterial host, to two low-cost ILs (triethanolammonium acetate [TEOH][OAc] and triethylammonium hydrogen sulfate [TEA][HS]). After continuous cultivations with gradually increased IL levels, we obtained evolved strains showing significant improvements in their growth performance under high concentrations of the ILs (maximum 4% [TEOH][OAc] and 8% [TEA][HS], in w/v) at which the wild-type strain cannot grow. Sequencing of evolved strains revealed multiple regions where mutations were associated with improved performance in minimal media conditions (relA, gacS, oprB/PP_1446, fleQ, tktA, and uvrY/PP_4100) and in IL-specific conditions (PP_5350, PP_4929/emrE, oprD, and PP_5324). We further validated the causality of the PP_5350 and emrE genes for improved IL tolerance via reverse engineering and transcriptomic analysis. Here, a common mutation in the PP_5350 gene, encoding a RpiR family transcriptional regulator, was shown to significantly upregulate the glyoxylate cycle for efficient acetate catabolism. In addition, it was suggested that the emrE gene encodes an efflux pump which can export [TEA][HS]. Finally, the cultivation of two of the best performing evolved strains with IL-treated biomass hydrolysates demonstrated their considerable potential to be used as platform strains. Taken as a whole, this work provides strains for utilization of IL-treated biomass and a mechanistic understanding that could be further leveraged to develop efficient microbial bioprocesses.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Manipulation of amorphous precursors to enhance zeolite nucleation

Crystallization in media comprised of amorphous precursors is becoming a more common phenomenon for numerous synthetic, biological, and natural materials that grow by a combination of classical and nonclassical pathways. Amorphous phases can exhibit a wide range of physicochemical properties that may evolve during the course of nucleation and crystal growth. This creates challenges for establishing causal relationships between amorphous precursor properties and their effect(s) on the selection of mechanistic pathways of crystallization and ultimately the properties of the crystalline product. In this study, we examine ways to manipulate the composition and colloidal stability of amorphous (alumino)silicate precursors that are prevalent in nanoporous zeolite syntheses. Changes in the amorphous precursor properties are evaluated on the basis of their ability to enhance rates of crystal formation. Here, we use fumed silica as the primary silicon source and examine the effects of infusing the source or growth medium with additional alkali metal, which serves as an inorganic structure-directing agent to facilitate the formation of porous crystal structures. We also assess the impact of adding a polymer additive, which reduces the colloidal stability of precursors, wherein we posit that the confined pockets of solution within the interstitial spaces of the precursor aggregates play an important role in regulating the rate of zeolite crystallization. Three commercially relevant zeolites (mordenite, SSZ-13, and ZSM-5) were selected for this study based on their diverse frameworks and methods of preparation. Here our findings reveal that alkali infusion significantly reduces the crystallization times for mordenite and SSZ-13, but has little impact on ZSM-5 synthesis. Conversely, we find that polymer addition markedly enhanced the rates of crystallization among all three zeolites, suggesting that this method may be a general approach to reduce zeolite synthesis times. Given the relatively high costs associated with commercial zeolite production, identifying new methods to improve the efficiency of hydrothermal syntheses can have significant practical implications beyond the fundamental benefits of developing new routes to tailor nonclassical crystallization.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A Systems Perspective of Heterocellular Signaling

Signal exchange between different cell types is essential for development and function of multicellular organisms, and its dysregulation is causal in many diseases. Unfortunately, most cell-signaling work has employed single cell types grown under conditions unrelated to their native context. Recent technical developments have started to provide the tools needed to follow signaling between multiple cell types, but gaps in the information they provide have limited their usefulness in building realistic models of heterocellular signaling. Currently, only targeted assays have the necessary sensitivity, selectivity and spatial resolution to usefully probe heterocellular signaling processes, but these are best used to test specific, mechanistic models. Decades of systems biology research with monocultures has provided a solid foundation for building models of heterocellular signaling, but current models lack a realistic description of regulated proteolysis and the feedback processes triggered within and between cells. Identification and understanding of key regulatory processes in the extracellular environment and of recursive signaling patterns between cells will be essential to building predictive models of heterocellular systems.

systems biology, EGFR, heterocellular, Wound heali↗

Radio to gamma-ray variability study of blazar S5 0716+714

In this paper, we present the results of a series of radio, optical, X-ray, and γ-ray observations of the BL Lac object S50716+714 carried out between April 2007 and January 2011. The multifrequency observations were obtained using several ground- and space-based facilities. The intense optical monitoring of the source reveals faster repetitive variations superimposed on a long-term variability trend on a time scale of ~350 days. Episodes of fast variability recur on time scales of ~60-70 days. The intense and simultaneous activity at optical and γ-ray frequencies favors the synchrotron self-Compton mechanism for the production of the high-energy emission. Two major low-peaking radio flares were observed during this high optical/γ-ray activity period. The radio flares are characterized by a rising and a decaying stage and agrees with the formation of a shock and its evolution. We found that the evolution of the radio flares requires a geometrical variation in addition to intrinsic variations of the source. Different estimates yield robust and self-consistent lower limits of δ ≥ 20 and equipartition magnetic field B eq ≥ 0.36 G. Causality arguments constrain the size of emission region θ ≤ 0.004 mas. We found a significant correlation between flux variations at radio frequencies with those at optical and γ-rays. Theoptical/GeV flux variations lead the radio variability by ~65 days. The longer time delays between low-peaking radio outbursts and optical flares imply that optical flares are the precursors of radio ones. An orphan X-ray flare challenges the simple, one-zone emission models, rendering them too simple. Finally, here we also describe the spectral energy distribution modeling of the source from simultaneous data taken through different activity periods.

79 ASTRONOMY AND ASTROPHYSICS↗

Constraining the location of rapid gamma-ray flares in the flat spectrum radio quasar 3C 273 [Constraining the location of rapid gamma-ray flares in the FSRQ 3C 273]

Here, we present a γ-ray photon flux and spectral variability study of the flat-spectrum radio quasar 3C 273 over a rapid flaring activity period between September 2009 to April 2010. Five major flares were observed in the source during this period. The most rapid flare observed in the source has a flux doubling time of 1.1 hr. The rapid γ-ray flares allow us to constrain the location and size of the γ-ray emission region in the source. The γγ-opacity constrains the Doppler factor δ γ ≥ 10 for the highest energy (15 GeV) photon observed by the Fermi -Large Area Telescope (LAT). Causality arguments constrain the size of the emission region to 1.6 × 10 15 cm. The γ-ray spectra measured over this period show clear deviations from a simple power law with a break in the 1–2 GeV energy range. We discuss possible explanations for the origin of the γ-ray spectral breaks. Our study suggests that the γ-ray emission region in 3C 273 is located within the broad line region (< 1.6 pc). As a result, the spectral behavior and temporal characteristics of the individual flares indicate the presence of multiple shock scenarios at the base of the jet.

79 ASTRONOMY AND ASTROPHYSICS↗

The quenching of galaxies, bulges, and disks since cosmic noon

Here, we present an analysis of the quenching of star formation in galaxies, bulges, and disks throughout the bulk of cosmic history, from z = 2 – 0. We utilise observations from the Sloan Digital Sky Survey and the Mapping Nearby Galaxies at Apache Point Observatory survey at low redshifts. We complement these data with observations from the Cosmic Assembly Near-Infrared Deep Extragalactic Legacy Survey at high redshifts. Additionally, we compare the observations to detailed predictions from the LGalaxies semi-analytic model. To analyse the data, we developed a machine learning approach utilising a Random Forest classifier. We first demonstrate that this technique is extremely effective at extracting causal insight from highly complex and inter-correlated model data, before applying it to various observational surveys. Our primary observational results are as follows: at all redshifts studied in this work, we find bulge mass to be the most predictive parameter of quenching, out of the photometric parameter set (incorporating bulge mass, disk mass, total stellar mass, and B/T structure). Moreover, we also find bulge mass to be the most predictive parameter of quenching in both bulge and disk structures, treated separately. Hence, intrinsic galaxy quenching must be due to a stable mechanism operating over cosmic time, and the same quenching mechanism must be effective in both bulge and disk regions. Despite the success of bulge mass in predicting quenching, we find that central velocity dispersion is even more predictive (when available in spectroscopic data sets). In comparison to the LGalaxies model, we find that all of these observational results may be consistently explained through quenching via preventative ‘radio-mode’ active galactic nucleus feedback. Furthermore, many alternative quenching mechanisms (including virial shocks, supernova feedback, and morphological stabilisation) are found to be inconsistent with our observational results and those from the literature.

79 ASTRONOMY AND ASTROPHYSICS↗

Bayesian inference of multi-messenger astrophysical data: Joint and coherent inference of gravitational waves and kilonovae

Multi-messenger observations of binary neutron star mergers can provide information on the neutron star’s equation of state (EOS) above the nuclear saturation density by directly constraining the mass-radius diagram. We present a Bayesian framework for joint and coherent analyses of multi-messenger binary neutron star signals. As a first application, we analyze the gravitational-wave GW170817 and the kilonova (kN) AT2017gfo data. These results are then combined with the most recent X-ray pulsar analyses of PSR J0030+0451 and PSR J0740+6620 to obtain new EOS constraints.We extend the bajes infrastructure with a joint likelihood for multiple datasets, support for various semi-analytical kN models, and numerical-relativity (NR)-informed relations for the mass ejecta, as well as a technique to include and marginalize over modeling uncertainties. The analysis of GW170817 used the TEOBResumS effective-one-body waveform template to model the gravitational-wave signal. The analysis of AT2017gfo used a baseline multicomponent spherically symmetric model for the kN light curves. Various constraints on the mass-radius diagram and neutron star properties were then obtained by resampling over a set of ten million parameterized EOSs, which was built under minimal assumptions (general relativity and causality).

79 ASTRONOMY AND ASTROPHYSICS↗

A new effective theory for stochastic relativistic hydrodynamics

Thermal fluctuations are a fundamental feature of dissipative systems that are essential for understanding physics near the expected critical point of QCD and in small systems. When such fluctuations are modeled naively in relativistic systems, strange features can appear such as negative self-correlation functions. We construct an effective theory for nonlinear stochastic relativistic hydrodynamics that ensure a well-posed mathematical formulation. Using Crooks fluctuation theorem, we derive a symmetry of the effective action that incorporates fluctuations through a suitable free energy functional. For divergence type theories, the action can then be fully specified using a single vector generating current. The equations of motion obtained using this procedure are guaranteed to be flux conservative and symmetric hyperbolic when the dynamics is causal. This ensures that these equations are well-posed (for suitable initial data) and are in a form that can easily be simulated, including with Metropolis techniques.

Mullins, Nicki [University of Illinois at Urbana-C↗

Quantum degenerate systems

A degenerate dynamical system is characterized by a symplectic structure whose rank is not constant throughout phase space. Its phase space is divided into causally disconnected, nonoverlapping regions in each of which the rank of the symplectic matrix is constant, and there are no classical orbits connecting two different regions. Here the question of whether this classical disconnectedness survives quantization is addressed. Our conclusion is that in irreducible degenerate systems-in which the degeneracy cannot be eliminated by redefining variables in the action-the disconnectedness is maintained in the quantum theory: there is no quantum tunnelling across degeneracy surfaces. This shows that the degeneracy surfaces are boundaries separating distinct physical systems, not only classically, but in the quantum realm as well. The relevance of this feature for gravitation and Chern-Simons theories in higher dimensions cannot be overstated.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Noncommuting local common causes for correlations violating the Clauser-Horne inequality

In the paper, the EPR-Bohm scenario will be reproduced in an algebraic quantum field theoretical setting with locally finite degrees of freedom. It will be shown that for a set of spatially separated correlating events (projections) maximally violating the Clauser-Horne inequality there can be given a common causal explanation if commutativity is abandoned between the common cause and the correlating events. Moreover, the noncommuting common cause will be local and supported in the common past of the correlating events.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Relaxation-time measurement via a time-dependent helicity balance model

A time-dependent helicity balance model applied to a spheromak helicity-injection experiment enables the measurement of the relaxation time during the sustainment phase of the spheromak. The experiment, the Helicity Injected Torus with Steady Inductive helicity injection (HIT-SI), studies spheromak formation and sustainment through inductive helicity injection. The model captures the dominant plasma behavior seen during helicity injection in HIT-SI by using an empirical helicity-decay rate, a time-dependent helicity-injection rate, and a composite Taylor state to model both the helicity content of the system and to calculate the resulting spheromak current. During single-injector operations, both the amplitude and the phase of the periodic rise and fall of the toroidal current are predicted by this model, with an exchange of helicity between the injector states and the spheromak state proposed as the causal mechanism. This phenomenon allows for the comparison of the delay between the current rises in the experiment and the numerical model, enabling a measurement of the relaxation time. The measured relaxation time of 4.8 {mu}s {+-} 2.8 {mu}s is shorter than the toroidal Alfven timescale. These results validate Hall MHD calculations of the Geospace Environmental Modeling challenge.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Noncommutative Common Cause Principles in algebraic quantum field theory

States in algebraic quantum field theory 'typically' establish correlation between spacelike separated events. Reichenbach's Common Cause Principle, generalized to the quantum field theoretical setting, offers an apt tool to causally account for these superluminal correlations. In the paper we motivate first why commutativity between the common cause and the correlating events should be abandoned in the definition of the common cause. Then we show that the Noncommutative Weak Common Cause Principle holds in algebraic quantum field theory with locally finite degrees of freedom. Namely, for any pair of projections A, B supported in spacelike separated regions V{sub A} and V{sub B}, respectively, there is a local projection C not necessarily commuting with A and B such that C is supported within the union of the backward light cones of V{sub A} and V{sub B} and the set {l_brace}C, C{sup Up-Tack }{r_brace} screens off the correlation between A and B.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Point-form dynamics of quasistable states

We present a field theoretical model of point-form dynamics which exhibits resonance scattering. In particular, we construct point-form Poincaré generators explicitly from field operators and show that in the vector spaces for the in-states and out-states (endowed with certain analyticity and topological properties suggested by the structure of the S-matrix) these operators integrate to furnish differentiable representations of the causal Poincaré semigroup, the semidirect product of the semigroup of spacetime translations into the forward lightcone and the group of Lorentz transformations. We also show that there exists a class of irreducible representations of the Poincaré semigroup defined by a complex mass and a half-integer spin. The complex mass characterizing the representation naturally appears in the construction as the square root of the pole position of the propagator. These representations provide a description of resonances in the same vein as Wigner's unitary irreducible representations of the Poincaré group provide a description of stable particles.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Dynamics of stimulated L → H transitions

We report on model studies of stimulated L → H transitions [K. Miki et al., Phys. Rev. Lett. 110, 195002 (2013)]. These studies use a reduced mesoscale model. Model studies reveal that L → H transition can be triggered by particle injection into a subcritical state (i.e., P<P{sub Thresh}). Particle injection changes edge mean flow shear via changes of density and temperature gradients. The change of edge mean flow shear is critical to turbulence collapse and the subsequent stimulated transition. For low ambient heating, strong injection is predicted to trigger a transient turbulence collapse. Repetitive injection at a period less than the lifetime of the collapsed state can thus maintain the turbulence collapse and so sustain a driven H-mode-like state. The total number of particles required to induce a transition by either injection or gas puffing is estimated. Results indicate that the total number of injected particles required is much smaller than that required for a transition by gas puffing. We thus show that internal injection is more efficient than gas puffing of comparable strength. We also observe that zonal flows do not play a critical role in stimulated transitions. For spontaneous transitions, the spike of the Reynolds work of turbulence on the zonal flow precedes the spike in the mean electric field shear. In contrast, we show that the two are coincident for stimulated transitions, suggesting that there is no causal link between zonal and mean flows for stimulated transitions.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Effects of non-local electron transport in one-dimensional and two-dimensional simulations of shock-ignited inertial confinement fusion targets

In some regions of a laser driven inertial fusion target, the electron mean-free path can become comparable to or even longer than the electron temperature gradient scale-length. This can be particularly important in shock-ignited (SI) targets, where the laser-spike heated corona reaches temperatures of several keV. In this case, thermal conduction cannot be described by a simple local conductivity model and a Fick's law. Fluid codes usually employ flux-limited conduction models, which preserve causality, but lose important features of the thermal flow. A more accurate thermal flow modeling requires convolution-like non-local operators. In order to improve the simulation of SI targets, the non-local electron transport operator proposed by Schurtz-Nicolaï-Busquet [G. P. Schurtz et al., Phys. Plasmas 7, 4238 (2000)] has been implemented in the DUED fluid code. Both one-dimensional (1D) and two-dimensional (2D) simulations of SI targets have been performed. 1D simulations of the ablation phase highlight that while the shock profile and timing might be mocked up with a flux-limiter; the electron temperature profiles exhibit a relatively different behavior with no major effects on the final gain. The spike, instead, can only roughly be reproduced with a fixed flux-limiter value. 1D target gain is however unaffected, provided some minor tuning of laser pulses. 2D simulations show that the use of a non-local thermal conduction model does not affect the robustness to mispositioning of targets driven by quasi-uniform laser irradiation. 2D simulations performed with only two final polar intense spikes yield encouraging results and support further studies.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗