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NASA NTRS1995

Flow-aligned jets in the magnetospheric cusp: Results from the Geospace Environment Modeling Pilot program

The extended flight of the Airborne Ionospheric Observatory during the Geospace Environment Modeling (GEM) Pilot program on January 16, 1990, allowed continuous all-sky monitoring of the two-dimensional ionospheric footprint of the northward interplanetary magnetic field (IMF) cusp in several wavelengths. Especially important in determining the locus of magnetosheath electron precipitation was the 630.0-nm red line emission. The most striking morphological change in the images was the transient appearance of zonally elongated regions of enhanced 630.0-nm emission which resembled 'rays' emanating from the centroid of the precipitation. The appearance of these rays was strongly correlated with the Y component of the IMF: when the magnitude of B(sub y) was large compared to B(sub z), the rays appeared; otherwise, the distribution was relatively unstructured. Late in the flight the field of view of the imager included the field of view of flow measurements from the European incoherent scatter radar (EISCAT). The rays visible in 630.0-nm emission exactly aligned with the position of strong flow jets observed by EISCAT. We attribute this correspondence to the requirement of quasi-neutrality; namely, the soft electrons have their largest precipitating fluxes where the bulk of the ions precipitate. The ions, in regions of strong convective flow, are spread out farther along the flow path than in regions of weaker flow. The occurrence and direction of these flow bursts are controlled by the IMF in a manner consistent with newly opened flux tubes; i.e., when absolute value of B(sub y) greater than absolute value of B(sub z), tension in the reconnected field lines produce east-west flow regions downstream of the ionospheric projection of the x line. We interpret the optical rays (flow bursts), which typically last between 5 and 15 min, as evidence of periods of enhanced dayside (or lobe) reconnection when absolute value of B(sub y) greater than absolute value of B(sub z). The length of the reconnection pulse is difficult to determine, however, since strong zonal flows would be expected to persist until the tension force in the field line has decayed, even if the duration of the enhanced reconnection was relatively short.

Weiss, L. A.↗
NASA NTRS1995

GHRS observations of cool, low-gravity star. 2: Flow and turbulent velocities in the outer atmosphere of gamma CRU CIS (M3.4 III)

The Goddard High Resoulution Spectrograph (GHRS) on the Hubble Space Telescope (HST) has been used to obtain medium (R = 20,000) and high (R = 85,000) resoultion UV spectra of chromosphere emission features for the M3.4 III star gamma Cru. Small Science Aperture (SSA) G270M and Echelle-B spectra of selected regions in the 2300-2850 A range were obtained to determine the kinematics of the chromosphere using lines of C2), Fe2, Co2, Si1/2), Ni2, Mn2, and Mg2. Profiles of C2) (UV 0.01) lines and fluorescently excited lines of low optical depth indicate average turbulent velocities (Doppler FWHM) of 30.2 +/- 1.3 and 28.8 +/- 1.3 km/s, respectively. The fluorescent emission lines (mean RV = 21.3 +/- 0.9 km/s) and the wings of the emission components of Fe2 lines (mean RV = 22.8 +/- 0.4 km/s) are approximately at rest relative to the radial velocity of the star (21 km/s), while the C2) lines show a modest inflow (mean RV = 23.1 +/- 0.9 km/s). The more opaque lines of Fe2 and Mg2 exhibit complex profiles resulting from line formation in an optically thick, extended expanding atmosphere. The emission wings of these lines are broadened by multiple scattering, and they are centered near the photospheric radial velocity. Closer to line center, these strong lines show a strong blueshifted self-absorption feature (already seen in IUE data), indicative of formation in an expanding chromosphere, and a previously unseen dip in the profiles on the red side of line center. The absorption components, when extracted using simple Gaussian fits, show strong correlations with the relative optical depths of the lines. The derived absorption flow velocities converge to the photospheric velocity as one examines spectra features formed deeper in the atmosphere. The blueward abosrption velocity increases in magnitude from about 7 to 14 km/s with increasing line optical depth - the strong absorptions directly map the acceleration of the outflowing stellar wind, while the interpretation of the weaker redshifted abosrptions is more ambiguous, indicating either an inflow of material or formation in an extended, spherically expanding outflow. The Mg2 and Fe2 profiles, taken together, imply that the wind speed decreases between the atmospheric layers where the Mg2 and Fe2 self-absorption components are formed. Interstellar absorptions are seen in the resonance lines of Mg2 (UV 1) and Fe2 (UV1) with zero-volt lower levels, at about -3 km/s, consistent with models of the interstellar medium in the direction of gamma Cru. Finally, we have detected the Mg2 'satellite lines' seen in solar spectra obtained above the limb. In gamma Cru these lines are probably fluorescently excited by H Ly beta.

Carpenter, Kenneth G.↗
NASA NTRS1995

Kinetic structure of intermediate shocks: Implications for the magnetopause

A general study of the structure and stability of intermediate shocks (IS) in an isotropic plasma is presented using a hybrid as well as a resistive Hall MHD code. Special emphasis is put on the question of whether the rotational layers observed at the magnetopause can be intermediate shocks. The shocks are formed dynamically by the interaction between a flowing plasma and a stationary piston. Coplanar ISs (both strong and weak) are found to be stable in a collisionless plasma. The existence of slow shocks in a high beta plasma is also established for the first time. Noncoplanar ISs are found to be time-dependent, evolving toward a rotational discontinuity (RD) after some characteristic time tau which can be quite long (1000 Omega(exp -1), where Omega is the ion gyrofrequency). The value tau is larger the closer the rotation angle is to 180 deg. Rotations larger than 180 deg are found to be unstable, decaying into a state of minimum shear (i.e., rotation angle less than 180 deg). There are various length scales associated with an IS in the kinetic regime. The shortest scale is found to be the length scale over which rotation of the transverse component of the magnetic field takes place. This scale can have a half width as small as one ion inertial length (c/omega(sub p)) for electron sense rotations and 3c/omega(sub p) for ion sense rotations, for an upstream ion beta of unity. Both of these scales are consistent with the observed thickness at the magnetopause and identical to the corresponding RD scales. A detailed study of the mode conversion of the Alfven ion cyclotron waves (A/IC) waves across both slow and intermediate shocks and the resulting downstream wave spectrum are presented. The possibility that the large number of relfected ions observed at the magnetopause may be due to the presence of strong ISs is considered. The identification of strong ISs and their distinction from RDs should be possible in observations due to significant differences that exist between jump conditions and overall structure of the two discontinuities. The jumps in the plasma parameters across a weak IS are typically small. This together with the fact that the weak ISs and RDs have very similar thickness and other overall properties makes the distinction between weak ISs and RDs in the observations largely inconsequential. However, at large noncoplanarity angles the weak IS approaches the RD limit in a relatively short time (approximately less than 100 Omega (exp -1)). Thus, magnetopause rotations with large noncoplanarity angles are most likely either RDs or strong ISs. Finally, direct comparisons between fluid (resistive Hall MHD) and kinetic simulations show that fluid theory is not applicable to study of ISs in a collisionless plasma.

Karimabadi, H.↗
NASA NTRS1995

Dissecting the EUV spectrum of Capella

Extreme ultraviolet spectra of Capella, obtained at various orbital phases over the past two years by the EUVE satellite, show strong emission lines from a continuous distribution of temperatures (approximately 10(exp 5 -10(exp 7.3) K). In addition to the strong He II lambda 303.8, the spectra are dominated by emission lines of highly ionized iron. Strong lines of Fe IX, XV, XVI, and XVIII-XXIV are used to construct emission measure distributions for the individual pointings, which show several striking features, including a minimum near 10(exp 6) K and a local maximum at 10(exp 6.8) K. Furthermore, intensities of the highest temperature lines (Te is greater than 10(exp 7) K) show variations (factors of 2-3) at different orbital phases, while the lower temperature Fe lines show variations of about 30% or less. The low variability of most of the strong low temperature features motivates a detailed analysis of the summed spectrum. With approximately 280 ksec of total exposure time, we have measured over 200 emission features with S/N greater than or equal to 3.0 in the summed spectrum. We report here initial results from the analysis of this spectrum. We can now identify lines of Fe VIII and X-XIV, as well as a number of electron density and abundance diagnostic lines. We also report here the first direct measurement of the continuum flux around approximately 100 A in a cool star atmosphere with EUVE. The continuum flux can be predicted from the emission measure model based on Fe line emission, and demonstrates that the Fe/H abundance ratio is dose to the solar photospheric value.

Brickhouse, Nancy S.↗
NASA NTRS1996

Performance of Optimized Actuator and Sensor Arrays in an Active Noise Control System

Experiments have been conducted in NASA Langley's Acoustics and Dynamics Laboratory to determine the effectiveness of optimized actuator/sensor architectures and controller algorithms for active control of harmonic interior noise. Tests were conducted in a large scale fuselage model - a composite cylinder which simulates a commuter class aircraft fuselage with three sections of trim panel and a floor. Using an optimization technique based on the component transfer functions, combinations of 4 out of 8 piezoceramic actuators and 8 out of 462 microphone locations were evaluated against predicted performance. A combinatorial optimization technique called tabu search was employed to select the optimum transducer arrays. Three test frequencies represent the cases of a strong acoustic and strong structural response, a weak acoustic and strong structural response and a strong acoustic and weak structural response. Noise reduction was obtained using a Time Averaged/Gradient Descent (TAGD) controller. Results indicate that the optimization technique successfully predicted best and worst case performance. An enhancement of the TAGD control algorithm was also evaluated. The principal components of the actuator/sensor transfer functions were used in the PC-TAGD controller. The principal components are shown to be independent of each other while providing control as effective as the standard TAGD.

Palumbo, D. L.↗
NASA NTRS1996

Enhancing Adhesion: Relative Merits of Different Approaches

Adhesive performance is improved mainly by manipulation of the bimaterials interface zone, which is only a few molecules thick. There are three approaches to enhancement of interfacial adhesion at the molecular level. They are 1) changing the nonchemically bonded interactions across the interface from weak ones to strong ones, 2) making the true interfacial area much larger than the simple geometric area, and 3) inducing chemical bonding between the two materials forming the interface. Our goal this summer was to question some of the built-in assumptions contained within these approaches and to determine the most promising approach, both theoretically and practically, for enhancing adhesion in NASA structures. Our computations revealed that all three of these approaches have, in theory, the potential to enhance molecular adhesion approximately ten-fold. Experiments, however, revealed that this excellent level of enhancement is not likely to be reached in practice. Each approach was found to be severely limited by practical problems. In addition, some of the built-in assumptions associated with these approaches were found to be insufficient or inadequate. The first approach, changing the nonchemically bonded interactions from weak to strong, Is an example of one containing inadequate assumptions. The extensive literature on intermolecular interactions, based on solution studies, shows that certain functional group pairs interact much more strongly than others. It has always been assumed that these data can be reliably extended to systems where only one member of the pair is in solution and the other Is contained in a solid surface. Our experiments this summer demonstrated that solution data do not adequately predict the strength of functional group interaction at the solid-liquid interface. Furthermore, the strong solvents needed to dissolve the monomers or polymers to which the functional groups of interest are attached compete successfully with the solid surface for the functional group. As a result, functional groups in solution cannot pair with the complementary groups in the solid surface, and the expected enhancement of nonchemically bonded interactions is not realized. The second approach, increasing the true interfacial area, is an example of one containing inadequate assumptions and suffering from numerous practical problems. First, practitioners have assumed that material removal, such as bead blasting or etching, increases true surface area (and therefore interfacial area) in a meaningful way. Our geometric analysis demonstrated that removal methods increase area by a factor of two at most. To increase interfacial area by an order of magnitude or more. a thin layer of high porosity must be added to the substrate surface prior to application of the adhesive phase. Consistent with this finding, we attempted to create a thin layer of rigid, highly porous glass on the surface of our smooth glass substrate by means of sol-gel technology. We were unable to surmount a wide variety of practical problems and obtained only collapsed, nonporous layers. Thus this approach, appealing in principle, would require long term development and is not promising in the near term. The third approach, inducing chemical bonding at the interface, is an example of one having neither inadequate assumptions nor insurmountable practical problems. When silicate glass is the substrate, there are only a few chemical reactions that can be successfully conducted to create these chemical bonds, and these reactions usually involve silicon-containing reagents. We compared the silazane reagents to the silane reagents and found through experiment that the silazanes react with the glass surface much more readily, and under milder conditions, than the silanes. The functional groups attached to the glass surface by silazane reactions were not able to be removed by solvent extraction, elevated temperature exposure, or mechanical action. This clearly indicates that the formation of chemical bonds at the interface is the most effective approach for enhancing molecular adhesion.

Penn, L. S.↗
NASA NTRS1998

Mesoscale Variability in SUCCESS Data

Analysis of meteorological, chemical, and microphysical data from the airborne SUCCESS mission is reported. Careful analysis of the complex DC-8 flight pattern of May 2, 1996 reveals 19 linear or nearly linear flight segments within six main geographical areas, which we have analyzed. Significant mountain wave activity is revealed in the data from the MMS and MTP instruments on the DC-8, which resembles previous observations of mountain wave structures near Boulder, CO. Strong mountain-wave-induced upwelling downwind of the Rockies is noted. Turbulence is also noted in regions of the mountain wave consistent with overturning near the tropopause. Zonal winds recorded on the ER-2 are shown to consistent with mountain wave breaking at or near critical levels in the stratosphere, consistent with the strong turbulence reported by the pilot during the ER-2 flight. Those observations have been supported with spectral analyses and modeling studies. "Postcasts" of mountain wave activity on May 2, 1996, using the Naval Research Laboratory Mountain Wave Forecast Model (NRL/MWFM) predicts both strong mountain wave activity near the tropopause (as measured by the DC-8) and strong mountain-wave-induced turbulence in the stratosphere (as encountered by the ER-2). Two-dimensional simulations of fluid flow over topography reveal similar isentropic structures to observations.

Eckermann, Stephen D.↗
NASA NTRS1999

AKN 564: An Unusual Component in the X-ray Spectra of NLSy1 Galaxies

We present an ASCA observation of the narrow-line Seyfert l (NLSyl) Arakelian 564. The X-ray light curve shows rapid variability, but no evidence for energy-dependence to these variations, within the 0.6 - 10 keV bandpass. A strong (EW approximately 70 eV) spectral feature is observed close to 1 keV. A similar feature has been observed in TON S180, another member of the NLSyl class of objects, but has not been observed in broad-line Seyfert galaxies. The feature energy suggests a large contribution from Fe L-shell lines but its intensity is difficult to explain in terms of emission and/or absorption from photoionized gas. The models which predict most emission at 1 keV are characterized by extreme values of column density, Fe abundance and ionization parameter. Models based on gas in thermal equilibrium with kT approximately l keV provide an alternative parameterization of the soft spectrum. The latter may be interpreted as the hot intercloud medium, undergoing rapid cooling and producing strong Fe L-shell recombination lines. In all cases the physical conditions are rather different from those observed in broad-line Seyferts. The hard X-ray spectrum shows a broad and asymmetric Fe K(alpha) line of large equivalent width (approximately 550 eV) suggestive of significant emission from the inner accretion disk. The profile can be explained by a neutral disk viewed at approximately 60 deg to the line-of-sight, contrary to the hypothesis that NLSyls are viewed pole-on. The large EW of this line, the strong 1 keV emission and the strong optical Fe emission lines all suggest an extreme Fe abundance in this and perhaps other NLSyls.

Turner, T. J.↗
NASA NTRS1999

Dependence of Cumulus Anvil Radiative Properties on Environmental Conditions in the Tropical West Pacific

Areally extensive, optically thick anvil clouds associated with mesoscale convective clusters dominate the shortwave cloud forcing in the tropics and provide longwave forcing comparable to that of thin cirrus. Changes in the cover and optical thickness of tropical anvils as climate warms can regulate the sign of cloud feedback. As a prelude to the study of MMCR data from the ARM TWP sites, we analyze ISCCP-derived radiative characteristics of anvils observed in the tropical west Pacific during the TOGA-COARE IOP. Anvils with radius greater than 100 km were identified and tracked from inception to decay using the Machado-Rossow algorithm. Corresponding environmental conditions just prior to the start of the convectove event were diagnosed using the Lin-Johnson objective analysis product. Small clusters (100-200 km radius) are observed to have a broad range of optical thicknesses (10-50), while intermediate optical thickness clusters are observed to range in size from 100 km to almost 1000 km. Large-size clusters appear to be favored by strong pre-storm large scale upward motion throughout the troposphere, moist low-to-midlevel relative humidities, environments with slightly higher CAPE than those for smaller clusters, and strong front-to-rear flow. Optically thick anvils are favored in situations of strong low-level moisture convergence and strong upper-level shear.

Ye, B.↗
NASA NTRS2000

Wintertime East Asian Jet Stream and Its Association with the Asian-Pacific Climate

Interannual variability of the wintertime East Asian westerly jet stream and the linkage between this variability and the Asian-Pacific climate are investigated. The study emphasizes on the variability of the jet core and its association with the Asian winter monsoon, tropical convection, upper tropospheric wave patterns, and the teleconnection of the jet with other climate systems. The relationship between the jet and North Pacific sea surface temperature pattern (SST) is also explored. NCEP/NCAR reanalysis, NASA GISS surface temperature, NASA GEOS reanalysis, NOAA reconstructed SST, GPCP precipitation, and NOAA snow cover data sets are analyzed in this study. An index of the East Asian jet has been defined by the December-February means of the 200 mb zonal winds that are averaged within a box enclosing the jet maximum, which shifts only moderately from one year to another especially in the south-north direction. The jet links to a teleconnection pattern whose major climate anomalies appear over the Asian continent and western Pacific (west of the dateline). This pattern differs distinctly from the teleconnection pattern associated with El Nino/Southern Oscillation (ENSO), which causes the Pacific/North American pattern to the east of the dateline. A strong jet is accompanied clearly by an increase in the intensity of the atmospheric circulation over Asia and the Pacific. In particular, the winter monsoon strengthens over East Asia, leading to cold climate in the region, and convection intensifies over the tropical Asia-Australia sector. Changes in the jet are associated with broad-scale modification in the upper tropospheric wave patterns that leads to downstream climate anomalies over the eastern Pacific. Through this downstream influence, the East Asian jet causes climate signals in North America as well. A strong jet gives rise to warming and less snow cover in the western United States but reverse climate anomalies in the eastern part of the country, although these signals are relatively weaker than the jet-related anomalies in East Asia. There is a strong association between the East Asian jet and the North Pacific SST (NPSST). A strong jet is accompanied by a cooling in the extratropical Pacific and a warming in the tropical-subtropical Pacific. Evidence also indicates that the extratropical NPSST pattern plays a role in modulating the intensity of the jet stream. ENSO, the jet, and the NPSST are mutually interactive on certain time scales and such an interaction links closely to the climate anomalies in the Asian-Pacific-American regions.

Yang, Song↗
NASA NTRS2000

Spacebased Observations of the Oceanic Responses to Monsoons in South China Sea and Arabian Sea

A large percentage of the world's population and their agrarian economy must endure the vagaries of the monsoons over the tropical oceans between Africa and the Philippines. We know very little about the oceanic responses to changes of the monsoon in the South China Sea (SCS), which is under the influence of the East Asian Monsoon System, and the Arabian Sea (AS), which is dominated by the Indian Monsoon System; oceanic observations are sparse in both regions. Data from spaceborne microwave scatterometers and radiometers have been used to estimate the two major atmospheric forcing, momentum flux and latent heat flux (LHF), which change with the monsoon winds. Spaceborne sensors also observed the surface signatures of the oceanic response: SST and sea level changes (SLC. Sufficient durations of these data have recently become available to allow the meaningful studies of the annual cycles and interannual anomalies. In SCS, the winter monsoon is strong and steady but the summer monsoon is weak and has large intraseasonal fluctuations. In AS, the summer monsoon is much stronger than the winter monsoon. Significant correlations between LHF and SST tendency, and between curl of wind stress and SLC are found in both oceans. In the north SCS, winds are strong and dry, LHF is high, and ocean cooling is also large in fall; LHF is low and the ocean warms up in spring. In AS, LHF and SST tendency have a semi annual period; LHF is high in summer when the wind is strong and in winter when the wind is dry. Along the coast of Oman, the strong summer southwest monsoon causes intense upwelling, low SST and LHF in summer; such wind-driven SST changes is not as obvious along the Vietnam coast because of the weaker summer monsoon. The negative correlation between curl of wind stress and SLC found in the central basins of both SCS and AS agrees with a simple Ekman pumping scenario. Cyclonic winds drive surface divergence and upwelling in the ocean; the rise of the thermocline causes lower sea levels. Anticyclonic winds cause higher SLC. The exceptions (positive correlations) are found in the coastal regions in the north and the south of SCS, off the west coast of India between 5N and 10N, and along the coast of Somalia.

Xie, Xiao-Su↗
NASA NTRS2001

Combining New Satellite Tools and Models to Examine Role of Mesoscale Interactions in Formation and Intensification of Tropical Cyclones

The objective of this research is to start filling the mesoscale gap to improve understanding and probability forecasts of formation and intensity variations of tropical cyclones. Sampling by aircraft equipped to measure mesoscale processes is expensive, thus confined in place and time. Hence we turn to satellite products. This paper reports preliminary results of a tropical cyclone genesis and early intensification study. We explore the role of mesoscale processes using a combination of products from TRMM, QuikSCAT, AMSU, also SSM/I, geosynchronous and model output. Major emphasis is on the role of merging mesoscale vortices. These initially form in midlevel stratiform cloud. When they form in regions of lowered Rossby radius of deformation (strong background vorticity) the mesoscale vortices can last long enough to interact and merge, with the weaker vortex losing vorticity to the stronger, which can then extend down to the surface. In an earlier cyclongenesis case (Oliver 1993) off Australia, intense deep convection occurred when the stronger vortex reached the surface; this vortex became the storm center while the weaker vortex was sheared out as the major rainband. In our study of Atlantic tropical cyclones originating from African waves, we use QuikSCAT to examine surface winds in the African monsoon trough and in the vortices which move westward off the coast, which may or may not undergo genesis (defined by NHC as reaching TD, or tropical depression, with a west wind to the south of the surface low). We use AMSU mainly to examine development of warm cores. TRMM passive microwave TMI is used with SSM/I to look at the rain structure, which often indicates eye formation, and to look at the ice scattering signatures of deep convection. The TRMM precipitation radar, PR, when available, gives precipitation cross sections. So far we have detailed studies of two African-origin cyclones, one which became severe hurricane Floyd 1999, and the other reached TD2 in June 2000 and then died out. The atmosphere off West African is dry and stable. It becomes less so between June and September, as the SST and convection heat up. QuikSCAT shows the African monsoon trough and shear zone extend westward over the ocean to nearly 30 degrees West. The evidence is strong that the two cyclones had in common multiple midlevel mergers, which extended to the surface keeping the surface vortex strong. These continued until both systems were designated TD's by NHC. In the June 2000 case, the main reason for failure was the lower SST and dry, stable atmosphere. This is shown by the comparison of the equivalent potential temperature maps and profiles with those from pre-Floyd. In the vortex which became Floyd, QuikSCAT shows continuous importation of high theta e (warm, moist) air from the south. From September 2-8, this air flowed around the vortex center, building up a high theta-e pool to the north. Then late on September 9, a 100-km wide jet of high theta-e air penetrated the vortex core, a major convective burst' was observed, and an intensifying, more elevated warm core was seen on AMSU. Rapid pressure fall and wind intensification were underway by 0000 UTC on September 10. Floyd became a Hurricane at 1200 UTC on Sept 10, 1999, with successive convective bursts running the hurricane thermodynamic engine by intensifying the warm core. TD2 was a strong African vortex, sustained by moderate convection (up to about 12.5 km) offshore of Africa. It peaked on June 23, showing an apparent "eye" on passive microwave composites. However, it could not assemble the ingredients for a convective burst. Thus it failed to get the thermodynamic hurricane engine going before it moved too far west of the region of lowered Rossby radius. By June 26, cloud systems were dying out. On June 25, a surface vortex was no longer seen on QuikSCAT, although one continued above the surface on model profiles until June 27. One of our main findings so far is showing the role of the mesoscale vortex interactions in sustaining some African vortices far out in to the mid Atlantic, where under adequate thermal/moisture conditions the hurricane heat engine can sometimes be started. We are working on similar studies of Cindy and Irene 1999. Cindy illustrates a case of wind shear working against an early-stage hurricane heat engine, while Irene formed from a Caribbean wave. An enormous value of combinations of satellite tools is that tropical cyclones can be studied in all parts of the global oceans where they occur. Detailed studies like ours are labor intensive but many statistical studies can be based on physical postulates developed. There are other new tools such as MODIS on TERRA of the Earth Observing System (EOS) which can be used to study the microphysics of tropical cyclones world wide, in particular to investigate the presence of mixed phase and the impact of atmospheric aerosols on the hydrometeor structure and rainfall from tropical cyclones.

Simpson, Joanne↗
NASA NTRS2002

Nucleation and Growth According to Lysozyme

How does one take a molecule, strongly asymmetric in both shape and charge distribution, and assemble it into a crystal? We propose a model for the nucleation and crystal growth process for tetragonal lysozyme that may be very germane to other monomeric proteins. The first species formed is postulated to be a dimer. Through repeating associations involving the same intermolecular interactions this becomes the 4(sub 3) helix, that in turn serves as the basic unit for nucleation and crystal growth. High salt attenuates surface charges while promoting hydrophobic interactions. Symmetry facilitates helix self-association. Assembly stability is enhanced when a four helix structure is obtained, with each bound to two neighbors. Only two unique interactions are required. The first are those for helix formation, where the dominant interaction is the intermolecular bridging anion. The second is the anti-parallel side-by-side helix-helix interaction, guided by alternating pairs of symmetry related salt bridges along each side. At this stage all eight unique positions of the P4(sub 3)2(sub 1)2(sub 1) unit cell are filled. From the above, the process is one of a) attenuating the most strongly interacting groups, such that b) the molecules begin to self-associate in defined patterns, so that c) symmetry is obtained, which d) propagates as a growing crystal. Simple and conceptually obvious in hindsight, this tells much about what we are empirically doing when we crystallize macromolecules. By adjusting the solution parameters we are empirically balancing the intermolecular interactions, preferentially attenuating the dominant strong (for lysozyme the charged groups) while strengthening the lesser strong (hydrophobic) interactions. Lysozyme is atypical in the breadth of its crystallization conditions; many proteins only crystallize under narrowly defined conditions, pointing to the criticality of the empirical balancing process. Lack of a singularly defined association pathway leads to formation of multiple species, i.e., amorphous precipitation. Weak interactions, such as hydrogen bonds, are promiscuous, serving to strengthen rather than define specific interactions. Participation in an interaction sequesters that surface from subsequent interactions, and we expect the strongest bonds to form first. When two molecules self associate the resulting species will have an axis of symmetry. Subsequent interactions between two associated species having equivalent interactions will also have symmetry. Only a few unique sets of interactions are required to give any of the commonly found space groups for monomeric proteins. This model and what it suggests will be discussed.

Pusey, Marc L.↗
NASA NTRS1998

Mesoscale Variability in SUCCESS Data

Analysis of meteorological, chemical and microphysical data from the airborne SUCCESS (SUbsonic aircraft Contrail and Cloud Effects Special Study) mission is reported. Careful analysis of the complex DC-8 flight pattern of May 2, 1996 reveals 19 linear flight segments within six main geographical areas, which we have analyzed. Significant mountain wave activity is revealed in the data from the MMS (Meteorology Measurement System) and MTP (Microwave Temperature Profiler) instruments on the DC-8, which resembles previous observations of mountain wave structures near Boulder, Colorado. Strong mountain-wave-induced upwelling downwind of the Rockies is noted. Turbulence is also noted in regions of the mountain wave consistent with overturning near the tropopause. Zonal winds recorded on the ER-2 are shown to be consistent with mountain wave breaking at or near critical levels in the stratosphere, consistent with the strong turbulence reported by the pilot during the ER-2 flight. These observations have been supported with spectral analyses and modeling studies. 'Postcasts' of mountain wave activity on May 2, 1996 using the Naval Research Laboratory Mountain Wave Forecast Model predicts both strong mountain wave activity near the tropopause and strong mountain-wave-induced turbulence in the stratosphere.

Eckermann, Stephen D.↗
NASA NTRS2002

A Proposed Model for Protein Crystal Nucleation and Growth

How does one take a molecule, strongly asymmetric in both shape and charge distribution, and assemble it into a crystal? We propose a model for the nucleation and crystal growth process for tetragonal lysozyme, based upon fluorescence, light, neutron, and X-ray scattering data, size exclusion chromatography experiments, dialysis kinetics, AFM, and modeling of growth rate data, from this and other laboratories. The first species formed is postulated to be a 'head to side' dimer. Through repeating associations involving the same intermolecular interactions this grows to a 4(sub 3) helix structure, that in turn serves as the basic unit for nucleation and subsequent crystal growth. High salt attenuates surface charges while promoting hydrophobic interactions. Symmetry facilitates subsequent helix-helix self-association. Assembly stability is enhanced when a four helix structure is obtained, with each bound to two neighbors. Only two unique interactions are required. The first are those for helix formation, where the dominant interaction is the intermolecular bridging anion. The second is the anti-parallel side-by-side helix-helix interaction, guided by alternating pairs of symmetry related salt bridges along each side. At this stage all eight unique positions of the P4(sub3)2(sub 1),2(sub 1) unit cell are filled. The process is one of a) attenuating the most strongly interacting groups, such that b) the molecules begin to self-associate in defined patterns, so that c) symmetry is obtained, which d) propagates as a growing crystal. Simple and conceptually obvious in hindsight, this tells much about what we are empirically doing when we crystallize macromolecules. By adjusting the growth parameters we are empirically balancing the intermolecular interactions, preferentially attenuating the dominant strong (for lysozyme the charged groups) while strengthening the lesser strong (hydrophobic) interactions. In the general case for proteins the lack of a singularly defined association pathway may lead to formation of multiple species, i.e., amorphous precipitation. Weak interactions, such as hydrogen bonds, are promiscuous, serving to strengthen rather than define specific interactions. Participation in an interaction sequesters that surface from subsequent interactions, and we expect the strongest bonds to form first. This model, its basis, how it fits into the currently understood osmotic second virial coefficient approach to crystallization, and what it suggests will be discussed.

Pusey, Marc↗
NASA NTRS2002

Measurements of Turbulence Attenuation by a Dilute Dispersion of Solid Particles in Homogeneous Isotropic Turbulence

This research addresses turbulent gas flows laden with fine solid particles at sufficiently large mass loading that strong two-way coupling occurs. By two-way coupling we mean that the particle motion is governed largely by the flow, while the particles affect the gas-phase mean flow and the turbulence properties. Our main interest is in understanding how the particles affect the turbulence. Computational techniques have been developed which can accurately predict flows carrying particles that are much smaller than the smallest scales of turbulence. Also, advanced computational techniques and burgeoning computer resources make it feasible to fully resolve very large particles moving through turbulent flows. However, flows with particle diameters of the same order as the Kolmogorov scale of the turbulence are notoriously difficult to predict. Some simple flows show strong turbulence attenuation with reductions in the turbulent kinetic energy by up to a factor of five. On the other hand, some seemingly similar flows show almost no modification. No model has been proposed that allows prediction of when the strong attenuation will occur. Unfortunately, many technological and natural two-phase flows fall into this regime, so there is a strong need for new physical understanding and modeling capability. Our objective is to study the simplest possible turbulent particle-laden flow, namely homogeneous, isotropic turbulence with a uniform dispersion of monodisperse particles. We chose such a simple flow for two reasons. First, the simplicity allows us to probe the interaction in more detail and offers analytical simplicity in interpreting the results. Secondly, this flow can be addressed by numerical simulation, and many research groups are already working on calculating the flow. Our detailed data can help guide some of these efforts. By using microgravity, we can further simplify the flow to the case of no mean velocity for either the turbulence or the particles. In fact the addition of gravity as a variable parameter may help us to better understand the physics of turbulence attenuation. The experiments are conducted in a turbulence chamber capable of producing stationary or decaying isotropic turbulence with nearly zero mean flow and Taylor microscale Reynolds numbers up to nearly 500. The chamber is a 410 mm cubic box with the corners cut off to make it approximately spherical. Synthetic jet turbulence generators are mounted in each of the eight corners of the box. Each generator consists of a loudspeaker forcing a plenum and producing a pulsed jet through a 20 mm diameter orifice. These synthetic jets are directed into ejector tubes pointing towards the chamber center. The ejector tubes increase the jet mass flow and decrease the velocity. The jets then pass through a turbulence grid. Each of the eight loudspeakers is forced with a random phase and frequency. The resulting turbulence is highly Isotropic and matches typical behavior of grid turbulence. Measurements of both phases are acquired using particle image velocimetry (PIV). The gas is seeded with approximately 1 micron diameter seeding particles while the solid phase is typically 150 micron diameter spherical glass particles. A double-pulsed YAG laser and a Kodak ES-1.0 10-bit PIV camera provide the PIV images. Custom software is used to separate the images into individual images containing either gas-phase tracers or large particles. Modern high-resolution PIV algorithms are then used to calculate the velocity field. A large set of image pairs are acquired for each case, then the results are averaged both spatially and over the ensemble of acquired images. The entire apparatus is mounted in two racks which are carried aboard NASA's KC-135 Flying Microgravity Laboratory. The rack containing the turbulence chamber, the laser head, and the camera floats freely in the airplane cabin (constrained by competent NASA personnel) to minimize g-jitter.

Eaton, John↗
NASA NTRS2003

Unveiling the Nature of Soft Gamma Repeaters and Magnetars

We briefly describe some results of our ongoing study of Soft Gamma Repeater (SGR) bursts with Rossi X-ray Timing Explorer (RXTE) satellite. We have detected evidence of cyclotron resonance absorption features from the SGR 1806-20 in the spectrum of a long, complex precursor that preceded a strong burst. The observation is made by the analysis of data from the RXTE. The features consist of a narrow 5.0 keV absorption line together with modulation near its second and third harmonics (at 11.2 keV and 17.5 keV respectively). The line features are transient and are detected in the harder radiation part of the precursor. The 5.0 keV feature is strong, with an equivalent width of approximately 500 eV and a narrow width of less than 0.4 keV. Interpreting the features as electron cyclotron lines in the context of accretion models leads to a large mass radius ratio (M/R greater than 0.3 M sun/km) that is inconsistent with neutron stars or that requires a low (5-7) x l0(exp 11)G magnetic field that is unlikely for SGRs. The line widths are also narrow compared with those of electron cyclotron resonances observed so far in X-ray pulsars. In the magnetar picture, the features are plausibly explained as ion cyclotron resonances in an ultra-strong magnetic field that have recently been predicted from magnetar candidates. In this view, the 5.0 keV feature is consistent with a proton cyclotron fundamental whose energy and width are close to model predictions. The line energy would correspond to a surface magnetic field of 1.0 x 10(exp 15)G for SGR 1806-20, in good agreement with that inferred from the spin-down measure in the source. Following the first evidence of proton cyclotron features from SGR 1806-20, we performed a comprehensive search of a large number of bursts from the source. We detected the 5 keV absorption feature in a variety of bursts, confirming our initial discovery and establishing the presence of the feature in the source s burst spectra. The line feature is well explained as proton cyclotron resonance in an ultra-strong magnetic field, offering a direct measurement of SGR 1806-20 s magnetic field (B approx. 10(exp l5)G) and a clear evidence of a magnetar. Together with the source's spin-down rate, the feature also provided the first measurement of the gravitational redshift, mass and radius of a magnetar.

Parke, William↗
NASA NTRS2003

CME Prediction from Line-of-Sight Magnetogram

We have previously shown for bipolar active regions that measures of active-region nonpotentiality from vector magnetograms are correlated with active-region CME productivity. We have now obtained a measure from line-of-sight magnetograms that is well correlated both with our measures of active-region nonpotentiality from vector magnetograms and with active-region CME productivity. The measure is the length of strong-gradient main neutral line (L(sub G)). This is the length of the bipolar region's main neutral line on which the potential transverse field is greater than 150G, and the gradient in the line-of-sight field is greater than 50G/Mm. From the sample of 17 MSFC magnetograms of 12 basically bipolar active regions used in our previous paper, we find that L(sub G) is strongly correlated with one of our vector-magnetogram measures of nonpotentiality, the length of strong-gradient main neutral line L(sub SS) (99.7%). We also find that L(sub G) is as strongly correlated with CME productivity (99.7%) as is L(sub SS). Being obtainable from line-of-sight magnetograms, L(sub G) makes the much larger data set of line-of-sight magnetograms (i.e. from SOHO/MDI and Kitt Peak) available for CME prediction study. This is especially important for evolutionary studies, with SOHO/MDI having no daylight, cloudy weather, or atmospheric seeing problems. This work was supported by funding from NSF's division of Atmospheric Sciences (Space Weather and Shine Programs) and by NASA's office of Space Science (Living with a Star program Solar and Heliospheric Physics Supporting Research and Technology program).

Falconer, D. A.↗