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At least 829 records · Page 46

Permanent Draft Genome of Strain ESFC-1: Ecological Genomics of a Newly Discovered Lineage of Filamentous Diazotrophic Cyanobacteria

The nonheterocystous filamentous cyanobacterium, strain ESFC-1, is a recently described member of the order Oscillatoriales within the Cyanobacteria. ESFC-1 has been shown to be a major diazotroph in the intertidal microbial mat system at Elkhorn Slough, CA, USA. Based on phylogenetic analyses of the 16S RNA gene, ESFC-1 appears to belong to a unique, genus-level divergence; the draft genome sequence of this strain has now been determined. Here we report features of this genome as they relate to the ecological functions and capabilities of strain ESFC-1. The 5,632,035 bp genome sequence encodes 4914 protein-coding genes and 92 RNA genes. One striking feature of this cyanobacterium is the apparent lack of either uptake or bi-directional hydrogenases typically expected within a diazotroph. Additionally, a large genomic island is found that contains numerous low GC-content genes and genes related to extracellular polysaccharide production and cell wall synthesis and maintenance.

R Craig Everroad↗

Influence of analysis and design models on minimum weight design

The results of numerical experiments designed to illustrate how the minimum weight design, accuracy, and cost can be influenced by: (1) refinement of the finite element analysis model and associated load path problems, and (2) refinement of the design variable linking model are examined. The numerical experiments range from simple structures where the modelling decisions are relatively obvious and less costly to the more complex structures where such decisions are less obvious and more costly. All numerical experiments used employ the dual formulation in ACCESS-3 computer program. Guidelines are suggested for creating analysis and design models that predict a minimum weight structure with greater accuracy and less cost. These guidelines can be useful in an interactive optimization environment and in the design of heuristic rules for the development of knowledge-based expert optimization systems.

Salama, M.↗

Cloud-to-Ground Lightning Characteristics of a Major Tropical Cyclone Tornado Outbreak

It is well known that most tropical cyclones (TCs) that make landfall along the Gulf coast of the United States spawn at least a few tornadoes. Although most landfalling TCs generate fewer than a dozen such tornadoes, a small proportion produce large swarm outbreaks, with as many as 25 or more tornadoes. Usually, these major outbreaks occur in large, intense hurricane-strength TCs, but on 15-17 August 1994 Tropical Storm Beryl spun off 37 tornadoes along its path from the Florida panhandle through the mid-Atlantic states. Some 32 of these tornadoes occurred on 16 August 1994 from eastern Georgia to southern Virginia, with most of these taking place in South Carolina. Beryl's 37 tornadoes moved it into what was at that time fifth place historically in terms of TC tornado productivity. The Beryl outbreak is especially noteworthy in that at least three of the tornadoes achieved peak intensity of F3 on the Fujita damage intensity scale. Although no fatalities resulted from the Beryl outbreak, at least 50 persons suffered injuries, and property damages totalled more than $50 million . The Beryl outbreak is a good example of a TC whose greatest danger to the public is its post-landfall severe weather. In this respect, and in the character of its swarm outbreak of tornadoes, it resembles another large tornado outbreak spawned by a relatively weak TC, Hurricane Danny of 1985). In the Danny outbreak, numerous shallow mini-supercell storms were found to have occurred, and it was noted that, because of the storms' relatively shallow depth, cloud-to-ground (CG) lightning was negligible. Better observations of future TC tornado outbreaks, especially with modern surveillance tools such as Doppler radars and the National Lightning Detection Network (NLDN), were recommended. Although the Beryl tornado outbreak is not the first set of TC-spawned tornado storms to be observed with the NLDN, it is one of the largest and likely the most intense such outbreak. The purpose of this paper is to document the NLDN-derived CG lightning characteristics of Beryl's tornadic storms, and to see how they compare with observations of CG lightning activity in other types of severe storms. In particular, we attempt to quantify the CG flash rates of TC tornadic cells, and to discover if there are any characteristics of their CG activity that may be useful to operational forecasters seeking to distinguish which cells are most likely to produce severe weather.

McCaul, Eugene W., Jr.↗

The distribution of redshifts of quasars and related objects

A statistical analysis of some 386 redshifts is conducted together with a numerical simulation of 100 redshifts to evaluate the possibility that a short-wavelength periodic modulation may be present in the redshift distribution of quasars and related compact objects. A previous analysis by Burbidge and O'Dell (1972) is reviewed, and the inclusion of absorption redshifts in the data set is discussed. The results of the present analysis are found not to support claims for the presence of periodic modulations in redshift distribution.

Knight, J. W.↗

Scaling Analysis of Two–Phase Flow in Fractal Permeability Fields

Fluid mixing in permeable media is essential in many practical applications. The mixing process is a consequence of velocity fluctuations owing to geological heterogeneities and mobility contrast of fluids. Heterogeneities in natural rocks are often spatially correlated, and their properties, such as permeability, may be described using fractal distributions. This work models the fractal characteristics of such permeability fields in which the covariance function is expressed as a power-law function. A generalized scaling relation is derived relating various fractal permeability fields using the magnitude of their fluctuations. Here, this relation reveals the self-similar behavior of two-phase flow in such permeable media. To that end, a recently developed, high-resolution numerical simulator is employed to validate the analytically derived scaling relations. Two flow problems are considered in which flow is governed by 1) a linear, and 2) a nonlinear transport equation. Due to the probabilistic representation of the fractal permeability fields, a sensitivity study is conducted for each flow scenario to determine the number of realizations required for statistical convergence. Scaling analysis is performed using ensemble averages of simulated saturation profiles and their mixing lengths. Results support the validity of the developed scaling relation across the range of investigated flow conditions at intermediate times. The dynamics of linear flow in the asymptotic regime is affected by the correlation structure of heterogeneity. In nonlinear flow, scaling behavior appears to be dominated by the degree of nonlinearity.

58 GEOSCIENCES↗

Numerical Model Studies of the Martian Mesoscale Circulations

The study objectives were to evaluate by numerical modeling various possible mesoscale circulation on Mars and related atmospheric boundary layer processes. The study was in collaboration with J. Tillman of the University of Washington (who supported the study observationally). Interaction has been made with J. Prusa of Iowa State University in numerical modeling investigation of dynamical effects of topographically-influenced flow. Modeling simulations included evaluations of surface physical characteristics on: (i) the Martian atmospheric boundary layer and (ii) their impact on thermally and dynamically forced mesoscale flows. Special model evaluations were made in support of selection of the Pathfinder landing sites. J. Tillman's finding of VL-2 inter-annual temperature difference was followed by model simulations attempting to point out the forcing for this feature. Publication of the results in the reviewed literature in pending upon completion of the manuscripts in preparation as indicated later.

Segal, Moti↗

The Catalogue for Astrophysical Turbulence Simulations (CATS)

Turbulence is a key process in many fields of astrophysics. Advances in numerical simulations of fluids over the last several decades have revolutionized our understanding of turbulence and related processes such as star formation and cosmic ray propagation. However, data from numerical simulations of astrophysical turbulence are often not made public. We introduce a new simulation-oriented database for the astronomical community: the Catalogue for Astrophysical Turbulence Simulations (CATS), located at www.mhdturbulence.com. CATS includes magnetohydrodynamic (MHD) turbulent box simulation data products generated by the public codes athena++, arepo, enzo, and flash. CATS also includes several synthetic observational data sets, such as turbulent HI data cubes. We also include measured power spectra and three-point correlation functions from some of these data. We discuss the importance of open-source statistical and visualization tools for the analysis of turbulence simulations such as those found in CATS.

79 ASTRONOMY AND ASTROPHYSICS↗

Numerical simulation of free shear flows: Towards a predictive computational aeroacoustics capability

Implicit and explicit spatial differencing techniques with fourth order accuracy have been developed. The implicit technique is based on the Pade compact scheme. A Dispersion Relation Preserving concept has been incorporated into both of the numerical schemes. Two dimensional Euler computation of a spatially-developing free shear flow, with and without external excitation, has been performed to demonstrate the capability of numerical schemes developed. Results are in good agreement with theory and experimental observation regarding the growth rate of fluctuating velocity, the convective velocity, and the vortex-pairing process.

Soh, W. Y.↗

Supersonic second order analysis and optimization program user's manual

Approximate nonlinear inviscid theoretical techniques for predicting aerodynamic characteristics and surface pressures for relatively slender vehicles at supersonic and moderate hypersonic speeds were developed. Emphasis was placed on approaches that would be responsive to conceptual configuration design level of effort. Second order small disturbance theory was utilized to meet this objective. Numerical codes were developed for analysis and design of relatively general three dimensional geometries. Results from the computations indicate good agreement with experimental results for a variety of wing, body, and wing-body shapes. Case computational time of one minute on a CDC 176 are typical for practical aircraft arrangement.

Clever, W. C.↗

Numerical Study of Tip Vortex Flows

This paper presents an overview and summary of the many different research work related to tip vortex flows and wake/trailing vortices as applied to practical engineering problems. As a literature survey paper, it outlines relevant analytical, theoretical, experimental and computational study found in literature. It also discusses in brief some of the fundamental aspects of the physics and its complexities. An appendix is also included. The topics included in this paper are: 1) Analytical Vortices; 2) Experimental Studies; 3) Computational Studies; 4) Wake Vortex Control and Management; 5) Wake Modeling; 6) High-Lift Systems; 7) Issues in Numerical Studies; 8) Instabilities; 9) Related Topics; 10) Visualization Tools for Vertical Flows; 11) Further Work Needed; 12) Acknowledgements; 13) References; and 14) Appendix.

Dacles-Mariani, Jennifer↗

Parameter estimation from spontaneous imbibition into volcanic tuff

Two-phase fluid flow properties underlie quantitative prediction of water and gas movement, but constraining these properties typically requires multiple time-consuming laboratory methods. The estimation of two-phase flow properties (van Genuchten parameters, porosity, and intrinsic permeability) is illustrated in cores of vitric nonwelded volcanic tuff using Bayesian parameter estimation that fits numerical models to observations from spontaneous imbibition experiments. The uniqueness and correlation of the estimated parameters is explored using different modeling assumptions and subsets of the observed data. The resulting estimation process is sensitive to both moisture retention and relative permeability functions, thereby offering a comprehensive method for constraining both functions. The data collected during this relatively simple laboratory experiment, used in conjunction with a numerical model and a global optimizer, result in a viable approach for augmenting more traditional capillary pressure data obtained from hanging water column, membrane plate extractor, or mercury intrusion methods. This method may be useful when imbibition rather than drainage parameters are sought, when larger samples (e.g., including heterogeneity or fractures) need to be tested that cannot be accommodated in more traditional methods, or when in educational laboratory settings.

58 GEOSCIENCES↗

Isotropic seismic radiation from rock damage and dilatancy

SUMMARY We present semi-analytical and numerical results on isotropic radiation expected to be generated by seismic sources with damaged dilatant materials that sustain during failure an overall shear deformation. The results are derived for inclusions with different stiffness components, including those responsible for shear-volumetric coupling in dilatant material, and different geometries, in a surrounding elastic solid. The obtained relations indicate that the isotropic seismic potency and seismic moment components are proportional to the shear potency components multiplied by the aspect ratio between the thickness and length of the source zone. For a typical rupture zone with a thin tabular geometry, the expected small aspect ratio explains the general seismological observations of small isotropic radiation. However, isotropic radiation induced by dynamic dilation for short and thick sources is more pronounced and may reach for spherical sources sustaining shear deformation 18 per cent of the shear components. Sources that include also tensile components and explosions can produce larger isotropic radiation. The results provide rigorous relations that can be used to estimate different source properties in numerical simulations, experiments and field studies.

Geochemistry & Geophysics↗

Energy balance and Alfvén Mach numbers in compressible magnetohydrodynamic turbulence with a large-scale magnetic field

Energy equipartition is a powerful theoretical tool for understanding astrophysical plasmas. It is invoked, for example, to measure magnetic fields in the interstellar medium (ISM), as evidence for small-scale turbulent dynamo action, and, in general, to estimate the energy budget of star-forming molecular clouds. Here, in this study, we motivate and explore the role of the volume-averaged root-mean-squared (rms) magnetic coupling term between the turbulent, δB , and large-scale, B 0 , fields, $\langle$(δB·B 0 ) 2 $\rangle$$_{V}^{1/2}$. By considering the second moments of the energy balance equations we show that the rms coupling term is in energy equipartition with the volume-averaged turbulent kinetic energy for turbulence with a sub-Alfvénic large-scale field. Under the assumption of exact energy equipartition between these terms, we derive relations for the magnetic and coupling term fluctuations, which provide excellent, parameter-free agreement with time-averaged data from 280 numerical simulations of compressible magnetohydrodynamic (MHD) turbulence. Furthermore, we explore the relation between the turbulent mean field and total Alfvén Mach numbers, and demonstrate that sub-Alfvénic turbulence can only be developed through a strong, large-scale magnetic field, which supports an extremely super-Alfvénic turbulent magnetic field. This means that the magnetic field fluctuations are significantly subdominant to the velocity fluctuations in the sub-Alfvénic large-scale field regime. Throughout our study, we broadly discuss the implications for observations of magnetic fields and understanding the dynamics in the magnetized ISM.

79 ASTRONOMY AND ASTROPHYSICS↗

Turbulent Boundary Layers in Oscillating Flows. Part 1: an Experimental and Computational Study

An experimental-computational study of the behavior of turbulent boundary layers for oscillating air flows over a plane surface with a small favorable mean pressure gradient is described. Experimental studies were conducted for boundary layers generated on the test section wall of a facility that produces a flow with a mean free stream velocity and a superposed nearly-pure sinusoidal component over a wide range of frequency. Flow at a nominal mean free stream velocity of 50 m/s were studied at atmospheric pressure and temperature at selected axial positions over a 2 m test length for frequencies ranging from 4 to 29 Hz. Quantitative experimental results are presented for unsteady velocity profiles and longitudinal turbulence levels obtained from hot wire anemometer measurements at three axial positions. Mean velocity profiles for oscillating flows were found to exhibit only small deviations from corresponding steady flow profiles, while amplitudes and phase relationships exhibited a strong dependence on axial position and frequency. Since sinusoidal flows could be generated over a wide range of frequency, studies at fixed values of reduced frequency at different axial positions were studied. Results show that there is some utility in the use of reduced frequency to correlate unsteady velocity results. The turbulence level u' sub rms was observed to vary essentially sinusoidally around values close to those measured in steady flow. However, the amplitude of oscillation and phase relations for turbulence level were found to be strongly frequency dependent. Numerical predictions were obtained using an unsteady boundary layer computational code and the Cebeci-Smith and Glushko turbulence models. Predicted quantities related to unsteady velocity profiles exhibit fair agreement with experiment when the Cebeci-Smith turbulence model is used.

Cook, W. J.↗

A simple formulation of the delta-four-stream approximation for radiative transfer parameterizations

A systematic development of the delta-four-stream approximation for calculations of radiative fluxes in planetary atmosphere is presented. It is shown that an analytic solution for this approximation can be derived explicitly, with minimum computational effort for flux calculations. Relative accuracy checks for reflection, transmission, and absorption for numerous asymmetry factors, single-scattering albedos, optical depths, and solar zenith angles have been performed with respect to the 'exact' results computed from the adding method for radiative transfer. Overall, results from the delta-four-stream approximation yield relative accuracies within about 5 percent. This approximation is well suited to radiative transfer parameterizations involving flux and heating calculations in aerosol and cloudy atmospheres.

Liou, Kuo-Nan↗

Prediction of Aerodynamic Coefficients for Wind Tunnel Data using a Genetic Algorithm Optimized Neural Network

A fast, reliable way of predicting aerodynamic coefficients is produced using a neural network optimized by a genetic algorithm. Basic aerodynamic coefficients (e.g. lift, drag, pitching moment) are modelled as functions of angle of attack and Mach number. The neural network is first trained on a relatively rich set of data from wind tunnel tests of numerical simulations to learn an overall model. Most of the aerodynamic parameters can be well-fitted using polynomial functions. A new set of data, which can be relatively sparse, is then supplied to the network to produce a new model consistent with the previous model and the new data. Because the new model interpolates realistically between the sparse test data points, it is suitable for use in piloted simulations. The genetic algorithm is used to choose a neural network architecture to give best results, avoiding over-and under-fitting of the test data.

Rajkumar, T.↗

Preventing Camera Clipping Through Varied Terrain and Other Planetary Objects

Within the scope of computer visualization systems and technologies, camera objects allow users to navigate three-dimensional (3D) scenes much like a person would navigate the real world. As such, when one seeks to model a scene or environment based on real-world laws, the camera must often follow these same conventions. Accomplishing this in the world of computer renderings presents unique challenges for defining space, spatial relations, depth, distance, and height. Therefore, movement for a camera must be specifically designated and processed by the program in order to achieve accurate movement representations. Although this thought process involves each aspect of camera movement, one specific aspect of camera movement is the primary focus of this report: ensuring that the camera does not clip through an object and appear subsurface. This is important to mimic real-world movements because people in the real world would not go beneath the solid-surface terrain unless they intended to do so. By working with numerical definitions, equations, and variables, a computer can relate an object to its existence in space. Thus, such challenges in camera movements with computationally rendered 3D spaces can be mitigated.

Kristie O'Brien↗

Numerical simulations of turbulent thermal convection with differential rotation

The solar nebula, from which the planets in our solar system formed, featured a disk of gas and dust grains in rapid, differential rotation, and at some stage was likely to have been unstable to thermal convection. This situation is suspected by many to lead to significant turbulent Reynolds stress production and angular momentum transport in such systems, and estimates of transport rates have been attempted from unsubstantiated phenomenological models. In order to determine the circumstances and physical conditions under which our own planetary system formed and to explain recent observations of young stellar systems, it is necessary to develop realistic models of heat and angular momentum transport for such flows. Developing an understanding of complicated flows featuring thermal convection, rotation, and shear is also of wide interest in stellar astrophysics and in planetary and terrestrial atmospheric studies. The ultimate objective is to develop workable models based on the numerical simulations for constructing global solar nebula models; viz., relatively simple prescriptions for heat and angular momentum fluxes from given system parameters (e.g., ratios of rotation, shear, and convective lapse rates) are characterized, quantified, and developed. Toward this end, our program has been to attempt to understand the behavior of the direct numerical simulations of Boussinesq convection, which, despite the complexity of the results, is still an overly simplified approximation to the real system and should be more amenable to analysis. These results are also intended to be tested against turbulence models, especially those designed for atmospheric boundary layers, and may provide a basis for subgrid-scale models. In order to make the numerical simulations more realistic with regard to the solar nebula problem, a fully compressible code that will allow incorporation of large density stratifications and realistic thermodynamic and radiative properties is developed. In order to explore the properties of these flows at the very high values of Re found in natural systems and the very low values of Pr found in most astrophysical contexts, we will need to employ large-eddy simulations for which we want to determine the most appropriate subgrid-scale model to incorporate.

Cabot, William H.↗