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DOE OSTI2023

Empirical evidence that mean soil contaminant concentration is not a conservative indicator of external exposure to wildlife

Adequate information on external exposure is often a limiting factor in ecological risk assessments because of a lack of exposure data for free-ranging animals as they interact with a heterogeneous distribution of contaminants. Instead, most wildlife exposure data are estimated from model simulations. However, empirical exposure data are rarely available to verify model results, or to test fundamental assumptions inherent in exposure assessments. We used novel, GPS-coupled radiation dosimeters on reindeer (Rangifer tarandus) to quantify their external exposure for five months in a Chernobyl fallout affected mountainous area of Norway. The exposure data were then used to test a fundamental assumption in screening-level risk assessments: Mean soil contaminant concentrations can be used to conservatively estimate chronic external exposures to representative animals. External exposure and GPS coordinates were obtained hourly and compared to model simulations of exposure based on airborne surveys of 137 Cs soil contamination. Our objectives were to determine 1) if modelled dose estimates based on mean 137 Cs soil concentrations were conservative, and 2) if modelled dose estimates could be improved by adjusting for spatial–temporal heterogeneity of contaminants using 137 Cs concentrations within reindeers’ GPS-defined home ranges and core areas. We found that external exposure modelled from mean soil contaminant concentrations underestimated exposure by 70% compared to empirical measurements from GPS-dosimeter collars worn on individual animals. Using area-weighted mean contaminant levels within the animals’ home range improved the model estimates, but still underestimated the field dosimeter data by 53%. The best estimate of external exposure was obtained when high-use areas within their home range, along with spatial heterogeneity of the contaminant, was accounted for by using area-weighted mean soil contaminant levels within GPS-derived core areas. Accounting for temporal use of core areas within animals’ home range provided a 24% improvement. Here, a comparison of our analyses to similar work performed on Chernobyl wolves found the two studies concur that risk assessors should be cautious in relying on the paradigm of using averaged soil contaminant levels to provide conservative estimates of external exposure to representative individuals. Results of modelled external exposure based on mean soil contaminant concentrations could misguide assessors and cause inappropriate management decisions.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗

DOE OSTI2023

Comparison of inclusive and photon-tagged jet suppression in 5.02 TeV Pb+Pb collisions with ATLAS

Parton energy loss in the quark–gluon plasma (QGP) is studied with a measurement of photon-tagged jet production in 1.7 nb –1 of Pb+Pb data and 260 pb –1 of pp data, both at $\sqrt{^S{\text{NN}}}$ = 5.02 TeV, with the ATLAS detector. The process $pp$ → γ +jet+X and its analogue in Pb+Pb collisions is measured in events containing an isolated photon with transverse momentum ($p_{\text{T}}$) above 50 GeV and reported as a function of jet $p_{\text{T}}$. This selection results in a sample of jets with a steeply falling $p_{\text{T}}$ distribution that are mostly initiated by the showering of quarks. The $pp$ and Pb+Pb measurements are used to report the nuclear modification factor, $R_{\text{AA}}$, and the fractional energy loss, $S_{\text{loss}}$, for photon-tagged jets. In addition, the results are compared with the analogous ones for inclusive jets, which have a significantly smaller quark-initiated fraction. The $R_{\text{AA}}$ and $S_{\text{loss}}$ values are found to be significantly different between those for photon-tagged jets and inclusive jets, demonstrating that energy loss in the QGP is sensitive to the colour-charge of the initiating parton. Finally, the results are also compared with a variety of theoretical models of colour-charge-dependent energy loss.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2022

Octahedral oxide glass network in ambient pressure neodymium titanate

Abstract Rare-earth titanates form very fragile liquids that can be made into glasses with useful optical properties. We investigate the atomic structure of 83TiO 2 -17Nd 2 O 3 glass using pair distribution function (PDF) analysis of X-ray and neutron diffraction with double isotope substitutions for both Ti and Nd. Six total structure factors are analyzed (5 neutron + 1 X-ray) to obtain complementary sensitivities to O and Ti/Nd scattering, and an empirical potential structure refinement (EPSR) provides a structural model consistent with the experimental measurements. Glass density is estimated as 4.72(13) g cm −3 , consistent with direct measurements. The EPSR model indicates nearest neighbor interactions for Ti-O at $$\overline{r}_{TiO}$$ r ¯ TiO = 1.984(11) Å with coordination of $$n_{TiO}$$ n TiO = 5.72(6) and for Nd-O at $$\overline{r}_{NdO}$$ r ¯ NdO = 2.598(22) Å with coordination of $$n_{NdO}$$ n NdO = 7.70(26), in reasonable agreement with neutron first order difference functions for Ti and Nd. The titanate glass network comprises a mixture of distorted Ti-O 5 and Ti-O 6 polyhedra connected via 71% corner-sharing and 23% edge-sharing. The O-Ti coordination environments include 15% nonbridging O-Ti 1 , 51% bridging O-Ti 2 , and 32% tricluster O-Ti 3 . This structure is highly unusual for oxide glasses melt-quenched at ambient pressure, as it consists of Ti-O x predominantly in octahedral (with nearly no tetrahedral) coordination.

36 MATERIALS SCIENCE↗

DOE OSTI2022

Exploiting non-linear scales in galaxy–galaxy lensing and galaxy clustering: A forecast for the dark energy survey

ABSTRACT The combination of galaxy–galaxy lensing (GGL) and galaxy clustering is a powerful probe of low-redshift matter clustering, especially if it is extended to the non-linear regime. To this end, we use an N-body and halo occupation distribution (HOD) emulator method to model the redMaGiC sample of colour-selected passive galaxies in the Dark Energy Survey (DES), adding parameters that describe central galaxy incompleteness, galaxy assembly bias, and a scale-independent multiplicative lensing bias Alens. We use this emulator to forecast cosmological constraints attainable from the GGL surface density profile ΔΣ(rp) and the projected galaxy correlation function wp, gg(rp) in the final (Year 6) DES data set over scales $r_p=0.3\!-\!30.0\, h^{-1} \, \mathrm{Mpc}$. For a $3{{\ \rm per\ cent}}$ prior on Alens we forecast precisions of $1.9{{\ \rm per\ cent}}$, $2.0{{\ \rm per\ cent}}$, and $1.9{{\ \rm per\ cent}}$ on Ωm, σ8, and $S_8 \equiv \sigma _8\Omega _m^{0.5}$, marginalized over all halo occupation distribution (HOD) parameters as well as Alens. Adding scales $r_p=0.3\!-\!3.0\, h^{-1} \, \mathrm{Mpc}$ improves the S8 precision by a factor of ∼1.6 relative to a large scale ($3.0\!-\!30.0\, h^{-1} \, \mathrm{Mpc}$) analysis, equivalent to increasing the survey area by a factor of ∼2.6. Sharpening the Alens prior to $1{{\ \rm per\ cent}}$ further improves the S8 precision to $1.1{{\ \rm per\ cent}}$, and it amplifies the gain from including non-linear scales. Our emulator achieves per cent-level accuracy similar to the projected DES statistical uncertainties, demonstrating the feasibility of a fully non-linear analysis. Obtaining precise parameter constraints from multiple galaxy types and from measurements that span linear and non-linear clustering offers many opportunities for internal cross-checks, which can diagnose systematics and demonstrate the robustness of cosmological results.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

SDSS IV MaNGA: visual morphological and statistical characterization of the DR15 sample

ABSTRACT We present a detailed visual morphological classification for the 4614 MaNGA galaxies in SDSS Data Release 15, using image mosaics generated from a combination of r band (SDSS and deeper DESI Legacy Surveys) images and their digital post-processing. We distinguish 13 Hubble types and identify the presence of bars and bright tidal debris. After correcting the MaNGA sample for volume completeness, we calculate the morphological fractions, the bi-variate distribution of type and stellar mass M* – where we recognize a morphological transition ‘valley’ around S0a-Sa types – and the variations of the g − i colour and luminosity-weighted age over this distribution. We identified bars in 46.8 per cent of galaxies, present in all Hubble types later than S0. This fraction amounts to a factor ∼2 larger when compared with other works for samples in common. We detected 14 per cent of galaxies with tidal features, with the fraction changing with M* and morphology. For 355 galaxies, the classification was uncertain; they are visually faint, mostly of low/intermediate masses, low concentrations, and discy in nature. Our morphological classification agrees well with other works for samples in common, though some particular differences emerge, showing that our image procedures allow us to identify a wealth of added value information as compared to SDSS-based previous estimates. Based on our classification, we also propose an alternative criteria for the E–S0 separation, in the structural semimajor to semiminor axis versus bulge to total light ratio (b/a − B/T) and concentration versus semimajor to semiminor axis (C − b/a) space.

Vázquez-Mata, J. A. (ORCID:0000000186941204)↗

DOE OSTI2026

Jet charge with global event shapes: Probing quark flavor dynamics

We propose measuring the jet electric charge of jet regions, defined within the framework of global event shapes, as a probe of quark flavor dynamics within the nucleon and the hadronization process. In particular, we consider a measurement of the jet region charge while simultaneously keeping track of the energy flow throughout the event, as characterized by the global event shape. As a concrete example, we focus on the measurement of the (Q), the jet charge of the jet region (𝐽) defined within the framework of the 1-Jettiness global event shape (𝜏 1 ) for the Deep Inelastic Scattering (DIS) process, 𝑒 − +𝑝→𝑒 − +𝐽+𝑋, with unpolarized or longitudinally polarized protons. The 1-Jettiness distribution, binned according to jet charge, allows for enhanced quark flavor separation of the initial state unpolarized or polarized PDFs. On the other hand, the jet charge distribution binned by 1-Jettiness can serve as a probe of quark flavor dynamics in the final state hadronization process. We derive a factorization theorem for simultaneous measurements of 𝜏 1 and Q in the resummation region, 𝜏 1 ≪𝑃 𝐽 𝑇 , where 𝑃 𝐽 𝑇 denotes the transverse momentum of the jet region. The correlation between the jet region charge and the charge of the struck quark is expected to be the strongest in the resummation region. The factorization theorem contains a new universal , generalizing the standard jet function to include a jet charge measurement. Therefore these universal functions can be extracted from a global analysis of N-jettiness and thrust at 𝑒 + ⁢𝑒 − colliders. We provide simulation studies to demonstrate the sensitivity of the 1-Jettiness jet charge observable to quark flavor dynamics in nucleon structure and explore the possibility of probing the final state hadronization process. This observable is well-suited for applications with existing HERA data and the future Electron-Ion Collider (EIC).

Mantry, Sonny [University of North Georgia, Dahlon↗

DOE OSTI2023

First measurement of Λ c + production down to p T = 0 in p p and p -Pb collisions at s N N = 5.02 TeV

The production of prompt $Λ_{c}^{+}$ baryons has been measured at midrapidity in the transverse momentum interval 0 < p T < 1 GeV/c for the first time, in pp and p–Pb collisions at a center-of-mass energy per nucleon-nucleon collision $\sqrt{s_{NN}}$ = 5.02 TeV . The measurement was performed in the decay channel $Λ_{c}^{+}$ → p$K_{S}^{0}$ by applying new decay reconstruction techniques using a Kalman-Filter vertexing algorithm and adopting a machine-learning approach for the candidate selection. The p T -integrated $Λ_{c}^{+}$ production cross sections in both collision systems were determined and used along with the measured yields in Pb–Pb collisions to compute the p T -integrated nuclear modification factors R pPb and R AA of $Λ_{c}^{+}$ baryons, which are compared to model calculations that consider nuclear modification of the parton distribution functions. The $Λ_{c}^{+}$/D 0 baryon-to-meson yield ratio is reported for pp and p–Pb collisions. Comparisons with models that include modified hadronization processes are presented, and the implications of the results on the understanding of charm hadronization in hadronic collisions are discussed. A significant (3.7σ) modification of the mean transverse momentum of $Λ_{c}^{+}$ baryons is seen in p –Pb collisions with respect to pp collisions, while the p T -integrated $Λ_{c}^{+}$/D 0 yield ratio was found to be consistent between the two collision systems within the uncertainties.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2024

Resilience Assessment for Distribution Systems during Hurricanes: A Learning-Based Framework

This paper presents a proactive strategy for hurricane-resilient distribution systems. It proposes a Bayesian Neural Network-based outage prediction model considering various parameters, including electrical components, and weather and environmental factors. Addressing challenges in imbalanced outage datasets, a Bias-Variance Tradeoff method is proposed. A resilience assessment model quantifies resilience indices, providing insights into system weaknesses. The approach identifies weak points and serves as a planning benchmark. Numerical results on the modified IEEE 123-node test system demonstrate effectiveness in realistic hurricane scenarios.

Vahedi, Soroush↗

DOE OSTI2022

Increasing the Thermodynamic Driving Force of the Phosphofructokinase Reaction in Clostridium thermocellum

Glycolysis is an ancient, widespread, and highly conserved metabolic pathway that converts glucose into pyruvate. In the canonical pathway, the phosphofructokinase (PFK) reaction plays an important role in controlling flux through the pathway. Clostridium thermocellum has an atypical glycolysis and uses pyrophosphate (PP i ) instead of ATP as the phosphate donor for the PFK reaction. The reduced thermodynamic driving force of the PP i -PFK reaction shifts the entire pathway closer to thermodynamic equilibrium, which has been predicted to limit product titers. Here, in this study, we replace the PP i -PFK reaction with an ATP-PFK reaction. We demonstrate that the local changes are consistent with thermodynamic predictions: the ratio of fructose 1,6-bisphosphate to fructose-6-phosphate increases, and the reverse flux through the reaction (determined by 13 C labeling) decreases. The final titer and distribution of fermentation products, however, do not change, demonstrating that the thermodynamic constraints of the PP i -PFK reaction are not the sole factor limiting product titer.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

The Heavy Rainfall Mechanism Revealed by a Terrain-Resolving 4DVar Data Assimilation System—A Case Study

In this study, a newly developed terrain-resolving four-dimensional variational (4DVar)-based data assimilation system, Immersed Boundary Method_Variational Doppler Radar Analysis System (IBM_VDRAS), is applied to investigate the mechanisms leading to a heavy precipitation event that occurred in Taiwan during the Southwesterly Monsoon Experiment (SoWMEX) conducted in 2008. The multivariate analyses using IBM_VDRAS and surface observations reveal that the warm and moist southwesterly flow from the ocean decelerates after making landfall, forming a surface convergence zone along the coast, which is further strengthened during the passage of a prefrontal rainband. The flow ascends as it advances inland until reaching the mountains, producing persistent precipitation and the enhancement of evaporative cooling as well as a widespread high pressure zone. A very shallow (<0.4 km) layer of offshore flow can be identified over the southwestern plain, which helps to generate a quasi-stationary convergence zone near the coast. Furthermore, sensitivity studies are carried out to quantify the relative importance of the contributions made by topographic blockage, evaporative cooling, and their nonlinear interaction, to the evolution of this type of convective system. The influence of the topography is identified as the dominant factor in modulating the flow structure of the rainfall system. However, it is the nonlinear interaction between terrain and evaporation that determines the distribution of the temperature and pressure fields.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Internal 2-D Surface Temperature Measurements for Large Complex Geometries

For 2D-temperature monitoring applications, a variant of EIT (Electrical Impedance Tomography) is evaluated computationally in this work. Literature examples of poor sensor performance in the center of the 2D domains away from the side electrodes motivated this study which seeks to overcome some of the previously noted shortcomings. In particular, the use of ‘sensing skins’ with novel tailored baseline conductivities were examined using the EIDORS package for EIT. It was found that the best approach for detecting a hot spot depends on several factors such as the current injection (stimulation) patterns, the measurement patterns, and the reconstruction algorithms. For a well-performing combination of these factors, tailored baseline conductivities were assessed and compared to the baseline uniform conductivity. It was discovered that for some EIT applications, a tailored distribution needs to be smooth and that sudden changes in the conductivity gradients should be avoided. Still, the benefits in terms of improved EIT performance were small for conditions for which the EIT measurements had been ‘optimized’ for the uniform baseline case. Within the limited scope of this study, only two specific cases showed benefits from tailored distributions. For one case, a smooth tailored distribution with increased baseline conductivity in the center provided a better separation of two centrally located hot spots. For another case, a smooth tailored distribution with reduced conductivity in the center provided better estimates of the magnitudes of two hot spots near the center of the sensing skin.

47 OTHER INSTRUMENTATION↗

DOE OSTI2023

Monte Carlo Analyses of the FOEHN Experiment

The FOEHN critical experiment, which has been carried out at Cadarache (France) in the reactor EOLE in the early 70s, was designed to verify RHF design analyses. This study focuses on the impact of the FOEHN experiment uncertainties on the calculation of the energy deposition. The latter has been obtained by the Monte Carlo codes Serpent and MCNP. In the calculation of the energy deposition, the first code relies on KERMA factors whereas the latter code relies on Q-values. The two Monte Carlo codes share the same geometry and material specifications. In addition to the design and experiment parameters uncertainties, nuclear data also impacts the calculation of the energy deposition. In this study, the MCNP simulations use three different nuclear data library sets: ENDF/B versions VII.0, VII.1, and VIII.0. Finally, the ksens card of MCNP, using perturbation theory, has been used to identify the cross sections and isotopes with largest impact on the effective multiplication factor. By showing that the use of different software and computational methodologies and design parameters uncertainties do not significantly impact the core power distribution, this work demonstrate the appropriateness of the tools and methods employed for the conversion of involute-plate reactors.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2021

The Effect of Warm Dark Matter on Early Star Formation Histories of Massive Galaxies: Predictions from the CROC Simulations

Several massive (M * > 108 M ⊙ ), high-redshift (z = 8–10) galaxies have recently been discovered to contain stars with ages of several hundred million years, pushing the onset of star formation in these galaxies back to z ~ 15. The very existence of stars formed so early may serve as a test for cosmological models with suppressed small-scale power (and, hence, late formation of cosmic structure). We explore the ages of the oldest stars in numerical simulations from the Cosmic Reionization On Computers project with cold dark matter (CDM) and two warm dark matter (WDM) cosmologies with 3 and 6 keV particles. There are statistically significant differences of ~5 Myr between average stellar ages of massive galaxies in CDM and 3 keV WDM, while CDM and 6 keV WDM are statistically indistinguishable. Even this 5 Myr difference, however, is much less than current observational uncertainties on the stellar population properties of high-redshift galaxies. The age distributions of all galaxies in all cosmologies fail to produce a substantial Balmer break, although uncertainties in dust attenuation are a potentially significant factor. Finally, we assess the convergence of our simulation predictions and find that the systematic uncertainties on individual galaxy properties are comparable to the differences between cosmologies, suggesting these differences may not be numerically robust.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Planet-induced Vortices with Dust Coagulation in Protoplanetary Disks

In this work, we study how the dust coagulation/fragmentation will influence the evolution and observational appearances of vortices induced by a massive planet embedded in a low-viscosity disk by performing global 2D high-resolution hydrodynamical simulations. Within the vortex, due to its higher gas surface density and steeper pressure gradients, dust coagulation, fragmentation, and drift (to the vortex center) are all quite efficient, producing dust particles ranging from 1 μm to ~1.0 cm, as well as an overall high dust-to-gas ratio (above unity). In addition, the dust size distribution is quite nonuniform inside the vortex, with the mass-weighted average dust size at the vortex center (~4.0 mm) being a factor of ~10 larger than other vortex regions. Both large (~millimeter) and small (tens of microns) particles contribute strongly to affect the gas motion within the vortex. As such, we find that the inclusion of dust coagulation has a significant impact on the vortex lifetime and the typical vortex lifetime is about 1000 orbits. Furthermore, after the initial gaseous vortex is destroyed, the dust spreads into a ring with a few remaining smaller gaseous vortices with a high dust concentration and a large maximum size (~millimeter). At late time, the synthetic dust continuum images for the coagulation case show as a ring inlaid with several hot spots at the 1.33 mm band, while only distinct hot spots remain at 7.0 mm.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2023

Impact of Wildfires on Solar Resource Availability in California in a Changing Climate

Wildfires can emit large amounts of atmospheric particulate matters and influence not only air quality but also availability of photovoltaic (PV) generation due to scattering and absorption of solar radiation. Under anthropogenic changing climate, wildfire activity is projected to increase over western North America due to drier and warmer climate, implying increasing impact on solar resource and larger uncertainty in solar generation especially in regions with faster PV penetration. This study focuses on quantifying the impact of wildfires on aerosol optical depth (AOD) and thus solar resource over California using National Solar Radiation Database (NSRDB), developed by the National Renewable Energy Laboratory (NREL). This assessment includes historical analysis and estimation of solar resource under wildfire scenarios (2020 wildfire and an enhanced wildfire scenario based on 2020 wildfires). Historical analysis for the period of July-October 2019/2020 (low/high fire activity period) shows that the averaged global horizontal irradiance (GHI) and direct normal irradiance (DNI) are reduced by about 30 and 90 W m-2 (5.6 and 15.3%), respectively, during high fire activity period. To create AOD dataset for enhanced fire scenario, 165% increase in burn area (in around 2050) is selected based on comprehensive literature review, which is further applied to the Fire INventory from NCAR (FINN) fire emission. WRF-Chem model with the enhanced FINN emissions is used to simulate and represent a preserving spatial distribution of burned areas and wildfire-emitted aerosols. Our initial analysis suggests that the"enhanced 2020 wildfire" AOD can increase by a factor of 1.3 - 2, which can significantly reduce solar irradiance and increase uncertainty in generation and reliability of power system in extreme wildfire events under a high solar penetration scenario. Overall, this study provides an estimate of the impacts of wildfires on solar resource to make informed decisions on reserve planning, generation scheduling, and reliability investments.

aerosol optical depth↗

DOE OSTI2021

Which Combinations of Environmental Conditions and Microphysical Parameter Values Produce a Given Orographic Precipitation Distribution?

This study applies an idealized modeling framework, alongside a Bayesian Markov chain Monte Carlo (MCMC) algorithm, to explore which combinations of upstream environmental conditions and cloud microphysical parameter values can produce a particular precipitation distribution over an idealized two-dimensional, bell-shaped mountain. Simulations focus on orographic precipitation produced when an atmospheric river interacts with topography. MCMC-based analysis reveals that different combinations of parameter values produce a similar precipitation distribution, with the most influential parameters being relative humidity (RH), horizontal wind speed (U), surface potential temperature (θ sfc ), and the snow fall speed coefficient (A s ). RH, U, and A s exhibit interdependence: changes in one or more of these factors can be mitigated by compensating changes in the other(s) to produce similar orographic precipitation rates. The results also indicate that the parameter sensitivities and relationships can vary for spatial subregions and given different environmental conditions. In particular, high θ sfc values are more likely to produce the target precipitation rate and spatial distribution, and thus the ensemble of simulations shows a preference for liquid precipitation at the surface. The results presented here highlight the complexity of orographic precipitation controls, and have implications for flood and water management, observational efforts, and climate change.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2020

Weak lensing in DES Y3: redshift distributions, shape catalogue, and mass mapping

The size of galaxy surveys have rapidly escalated with time, growing from thousands of galaxies of the first pioneering surveys to current and future surveys (DES, KiDS, HSC, LSST, Euclid, WFIRST), which map (or plan to map) a few hundreds millions of galaxies. These ambitious programs have the potential to answer many open questions in Cosmology (or, depending on their results, to open new exciting scenarios, involving new physics beyond the standard cosmological model and the standard model of particle physics). In particular, this thesis focuses on the first three years of data from the Dark Energy Survey (DES Y3), which comprises 100 million galaxies observed in 5 different optical bands over 5000 square degrees of the southern hemisphere. DES and the data set used in this thesis are discussed in detail in Chapter 3, which together with Chapter 1 and 2 constitutes Part I of this thesis. The scientifically positive outcome of DES and other photometric galaxy surveys goes h and in h and with a supreme understanding of the data, of the observational systematics affecting the measurements, and of the limits of the theoretical modelling of the observables. One of the main challenge of galaxy photometric surveys like DES is to correctly estimate the distance to the galaxies. Photometric surveys observe the galaxies in a limited number of broad optical bands, and the estimate of their \textit{redshifts} is somewhat uncertain, which constitutes one of the main limiting factor of their cosmological analyses. Part II and its Chapter 4 are devoted to a new auxiliary technique recently developed that allows to infer (or calibrate) redshift distributions exploiting cross-correlation with small reference samples with secure redshifts. The so called ``clustering-redshift'' method is discussed in depth, as well as its role in the overall DES Y3 redshift calibration strategy. Part III and Chapter 5 are devoted to another key aspect of photometric surveys, that enables the stu dy of weak gravitational lensing: the shape catalogue. The official DES Y3 shape catalogue is presented, together with all the systematic tests performed to validate it such that it can be considered science-ready. Last, part IV focuses on how to use weak gravitational lensing and the DES Y3 shape catalogue to create weak lensing mass maps, i.e., maps of the mass distribution of the Universe. Chapter 6 discusses different map making techniques, whereas Chapter 7 presents a simulated cosmological analysis using the high order moments of the mass maps.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Genome-Wide Discovery of G-Quadruplexes in Wheat: Distribution and Putative Functional Roles

G-quadruplexes are nucleic acid secondary structures formed by a stack of square planar G-quartets. G-quadruplexes were implicated in many biological functions including telomere maintenance, replication, transcription, and translation, in many species including humans and plants. For wheat, however, though it is one of the world’s most important staple food, no G-quadruplex studies have been reported to date. Here, we computationally identify putative G4 structures (G4s) in wheat genome for the first time and compare its distribution across the genome against five other genomes (human, maize, Arabidopsis, rice, and sorghum). We identified close to 1 million G4 motifs with a density of 76 G4s/Mb across the whole genome and 93 G4s/Mb over genic regions. Remarkably, G4s were enriched around three regions, two located on the antisense and one on the sense strand at the following positions: 1) the transcription start site (TSS) (antisense), 2) the first coding domain sequence (CDS) (antisense), and 3) the start codon (sense). Functional enrichment analysis revealed that the gene models containing G4 motifs within these peaks were associated with specific gene ontology (GO) terms, such as developmental process, localization, and cellular component organization or biogenesis. We investigated genes encoding MADS-box transcription factors and showed examples of G4 motifs within critical regulatory regions in the VRN-1 genes in wheat. Furthermore, comparison with other plants showed that monocots share a similar distribution of G4s, but Arabidopsis shows a unique G4 distribution. Our study shows for the first time the prevalence and possible functional roles of G4s in wheat.

59 BASIC BIOLOGICAL SCIENCES↗