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At least 829 records · Page 46

Domain decomposition in the GPU-accelerated Shift Monte Carlo code

The GPU solver within the Shift continuous-energy Monte Carlo neutron transport code has been extended to provide domain decomposition in addition to domain replication to enable the solution of problems with memory requirements exceeding the capacity of a single GPU. The strategy follows the Multiple Set, Overlapping Domain (MSOD) approach that is used in Shift’s CPU solver and integrates into the event-based algorithm used for Shift’s GPU solver. Furthermore, the ability to assign processors to spatial domains non-uniformly has been maintained. In this work, two different approaches for communicating particle data between domains are considered, and multiple criteria for load balancing problems have been investigated. Numerical results are presented for both fresh and depleted small modular nuclear reactor (SMR) cores. A parallel efficiency of approximately 80% was achieved with up to 16 spatial domains measured relative to full domain replication. A scaling study on the Summit supercomputer demonstrates a weak scaling parallel efficiency of over 90% on over 24000 GPUs.

97 MATHEMATICS AND COMPUTING↗

Effects of Dose Error and Sample Size on Sonic Boom Dose-Response Curves

NASA will soon be collecting noise-annoyance community survey data as the X-59 aircraft flies supersonically over several communities in the USA. Sparse measurements of the X-59 sonic thumps will be used together with physics-based simulations to estimate noise doses at survey participant locations. These dose estimates have associated error that affects the accuracy of modeled dose-response curves, which can result in misestimation of annoyance. The precision in dose-response curves is also a consideration in selecting the number of survey participants. To enable pretest studies of dose error and precision, simulated dose-response data were generated based on NASA’s Quiet Supersonic Flights 2018 test. The data included various degrees of dose error and sample size. Frequentist multilevel logistic regression models were fit to the true and perturbed dose-response data. Simple proportional relationships were identified between the model parameters and the perturbation standard deviation. The summary dose-response curves illustrate the impact on accuracy if dose error is not accounted for in the model. The precision in the dose-response curves is also shown as the number of participants and degree of participation is varied. Finally, sampling variability is illustrated by showing the dose-response curves for several replicates with random draws of participants and errors.

X-59↗

Updates in Developing a Prototype Science Pipeline and Full-Volume, Global Hyperspectral Synthetic Data Sets for NASA’s Earth System Observatory’s Upcoming Surface, Biology and Geology Mission

The Surface Biology and Geology (SBG) mission recently passed mission confirmation review and has entered phase A – design and development. SBG will acquire high resolution solar-reflected spectroscopy and thermal infrared observations at a data rate of ~2.5 TB/day and generate products at ~40 TB/day. Given that the per-day volume is greater than NASA’s total extant airborne hyperspectral data collection, collecting, processing, disseminating, and exploiting the SBG data present new challenges. To meet these challenges, we have developed a prototype science pipeline and a full-volume global hyperspectral synthetic data set to help prepare for SBG’s flight (see poster GC42D-0730). Our science pipeline is based on the science processing technology developed for NASA’s Kepler and TESS planet-hunting missions. The pipeline infrastructure, Ziggy, provides a scalable architecture for robust, repeatable, and replicable science and application products that can be run on a range of systems from a laptop to the cloud or a supercomputer. Ziggy is compliant with NASA Procedural Requirement (NPR) 7150.2C, is at a technical readiness level (TRL) of 7 and has been released to github.com/nasa/ziggy. We integrated Ziggy with EO-1/Hyperion workflows to build a prototype pipeline and ingested the 17-year mission archive that provides globally sampled visible through shortwave infrared spectra that are representative of SBG data types and volumes. We fully implemented the first stage and processed the entire 55 TB Hyperion data set from the raw data (Level 0) to top-of-the-atmosphere radiance (Level 1R). We are currently evaluating the ISOFIT atmospheric correction module to convert the L1R data to surface reflectance (Level 2) before reprocessing the full data set to L2. Crosschecks are being performed with RadCalNet as well as with coincident observations by AVIRIS. We are also investigating modern methods for georectifying the Hyperion scenes. Finally, we describe an analysis of the cost to conduct forward processing and reprocessing campaigns for SBG on HECC with dedicated compute and storage resources using the resurrected Hyperion pipeline as a proxy for full-volume SBG data. The analysis demonstrates that SBG L0 data can be processed to L2 on HECC with full reprocessing campaigns every two years for ~$2.6M over a 7-year lifespan. Moreover, 69% of the system capacity would be available for other activities, possibly enabling future open-source science activities, including algorithm development, L3+ processing, .etc.

ESD↗

Intelligent Systems for Self-Healing Electronics

For long duration missions it is imperative to be able to monitor and record critical information. The data acquisition systems used must therefore be fault tolerant. This usually meant having redundant copies of critical channels. Since each channel usually consists of various components, the parts count, cost, weight and complexity of the system could be very high. The Advanced Data Acquisition System (ADAS) has been developed as a proof of concept. The purpose was to demonstrate an architecture where individual spare parts can replace defective ones to repair a channel. By so doing entire channels do not need replication. This reduces the need of total redundancy and reduces the parts count. This has the added feature that in addition to spare parts, good components of a failed channel can be used as spares in another channel. In addition to reducing parts count and cost, this configuration, with an intelligent decision maker, can improve the reliability of the overall system. Another unique feature of ADAS is that it uses reconfigurable analog filters. These components can be programmed, by the smart system to meet the specific needs of the part they are to replace. This way one part can serve as spare for many different components. The hardware was built and now serves as a platform for developing intelligent algorithms. Another related project was a wireless data acquisition system. I was invited to participate in the meetings and issue suggestions. A brief description of this system will also be included.

Latino, Carl D.↗

Discovering a Transferable Charge Assignment Model Using Machine Learning

Partial atomic charge assignment is of immense practical value to force field parametrization, molecular docking, and cheminformatics. Machine learning has emerged as a powerful tool for modeling chemistry at unprecedented computational speeds given accurate reference data. However, certain tasks, such as charge assignment, do not have a unique solution. We use a machine learning algorithm to discover a new charge assignment model by learning to replicate molecular dipole moments across a large, diverse set of nonequilibrium conformations of molecules containing C, H, N, and O atoms. The new model, called Affordable Charge Assignment (ACA), is computationally inexpensive and predicts dipoles of out-of-sample molecules accurately. Furthermore, dipole-inferred ACA charges are transferable to dipole and even quadrupole moments of much larger molecules than those used for training. We apply ACA to dynamical trajectories of biomolecules and produce their infrared spectra. Additionally, we find that ACA assigns similar charges to Charge Model 5 but with greatly reduced computational cost.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Wave Energy Converter Power Take-Off Modeling and Validation From Experimental Bench Tests

This article describes the implementation of a new numerical model of the power take-off system installed in the Monterey Bay Aquarium Research Institute wave energy converter, a device developed to provide power to various oceanic research missions. The simultaneous presence of hydraulic, pneumatic, and electrical subsystems in the power take-off system represents a significant challenge in forging an accurate model able to replicate the main dynamic characteristics of the system. The validation of the new numerical model is addressed by comparing simulations with the measurements obtained during a series of bench tests. Data from the bench tests show good agreement with the numerical model. The validated model provides deeper insights into the complex nonlinear dynamics of the power take-off system and will support further performance improvements in the future.

16 TIDAL AND WAVE POWER↗

Data Driven Smart Proxy for CFD Application of Big Data Analytics & Machine Learning in Computational Fluid Dynamics, Report Two: Model Building at the Cell Level

To ensure the usefulness of simulation technologies in practice, their credibility needs to be established with Uncertainty Quantification (UQ) methods. In this project, smart proxy is introduced to significantly reduce the computational cost of conducting large number of multiphase CFD simulations, which is typically required for non-intrusive UQ analysis. Smart proxy for CFD models are developed using pattern recognition capabilities of Artificial Intelligence (AI) and Data Mining (DM) technologies. Several CFD simulation runs with different inlet air velocities for a rectangular fluidized bed are used to create a smart CFD proxy that is capable of replicating the CFD results for the entire geometry and inlet velocity range. The smart CFD proxy is validated with blind CFD runs (CFD runs that have not played any role during the development of the smart CFD proxy). The developed and validated smart CFD proxy generates its results in seconds with reasonable error (less than 10%). Upon completion of this project, UQ studies that rely on hundreds or thousands of smart CFD proxy runs can be accomplished in minutes. Following figure demonstrates a validation example (blind CFD run) showing the results from the MFiX simulation and the smart CFD proxy for pressure distribution across a fluidized bed at a given time-step (the layer number corresponds to the vertical location in the bed).

97 MATHEMATICS AND COMPUTING↗

Utility Managed Distributed Energy Resources Intelligent Community - UDERMS iCommunity (Final Technical Report)

The Utility Managed Distributed Energy Resources Intelligent Community (UDERMS iCommunity) project, led by PacifiCorp and supported by the U.S. Department of Energy’s Building Technologies Office (Award No. DEEE0009782), aimed to demonstrate an integrated, utility-managed “behind-the-meter” distributed energy resource (DER) program connecting multifamily, commercial, institutional, and industrial buildings to deliver grid services and improve energy efficiency.

14 SOLAR ENERGY↗

Computational analysis of semi-span model test techniques

A computational investigation was conducted to support the development of a semi-span model test capability in the NASA LaRC's National Transonic Facility. This capability is required for the testing of high-lift systems at flight Reynolds numbers. A three-dimensional Navier-Stokes solver was used to compute the low-speed flow over both a full-span configuration and a semi-span configuration. The computational results were found to be in good agreement with the experimental data. The computational results indicate that the stand-off height has a strong influence on the flow over a semi-span model. The semi-span model adequately replicates the aerodynamic characteristics of the full-span configuration when a small stand-off height, approximately twice the tunnel empty sidewall boundary layer displacement thickness, is used. Several active sidewall boundary layer control techniques were examined including: upstream blowing, local jet blowing, and sidewall suction. Both upstream tangential blowing, and sidewall suction were found to minimize the separation of the sidewall boundary layer ahead of the semi-span model. The required mass flow rates are found to be practicable for testing in the NTF. For the configuration examined, the active sidewall boundary layer control techniques were found to be necessary only near the maximum lift conditions.

Milholen, William E., II↗

Finite Element Simulations of Two Vertical Drop Tests of F-28 Fuselage Sections

In March 2017, a vertical drop test of a forward fuselage section of a Fokker F-28 MK4000 aircraft was conducted as part of a joint NASA/FAA project to investigate the performance of transport aircraft under realistic crash conditions. In June 2017, a vertical drop test was conducted of a wing-box fuselage section of the same aircraft. Both sections were configured with two rows of aircraft seats, in a triple-double configuration. A total of ten Anthropomorphic Test Devices (ATDs) were secured in seats using standard lap belt restraints. The forward fuselage section was also configured with luggage in the cargo hold. Both sections were outfitted with two hat racks, each with added ballast mass. The drop tests were performed at the Landing and Impact Research facility located at NASA Langley Research Center in Hampton, Virginia. The measured impact velocity for the forward fuselage section was 346.8-in/s onto soil. The wing-box section was dropped with a downward facing pitch angle onto a sloping soil surface in order to create an induced forward acceleration in the airframe. The vertical impact velocity of the wing-box section was 349.2-in/s. A second objective of this project was to assess the capabilities of finite element simulations to predict the test responses. Finite element models of both fuselage sections were developed for execution in LS-DYNA(Registered Trademark), a commercial explicit nonlinear transient dynamic code. The models contained accurate representations of the airframe structure, the hat racks and hat rack masses, the floor and seat tracks, the luggage in the cargo hold for the forward section, and the detailed under-floor structure in the wing-box section. Initially, concentrated masses were used to represent the inertial properties of the seats, restraints, and ATD occupants. However, later simulations were performed that included finite element representations of the seats, restraints, and ATD occupants. These models were developed to more accurately replicate the seat loading of the floor and to enable prediction of occupant impact responses. Models were executed to generate analytical predictions of airframe responses, which were compared with test data to validate the model. Comparisons of predicted and experimental structural deformation and failures were made. Finally, predicted and experimental soil deformation and crater depths were also compared for both drop test configurations.

Jackson, Karen E.↗

Bhutan Water Resources Tech Paper: Comparing Precipitation, Temperature, and Phenology Data Trends in Bhutan to Assist the Himalayan Environmental Rhythm Observation and Evaluation System (HEROES) Project

Himalayan countries, including Bhutan, have become vulnerable to warming trends which result in increasing temperature and variable rainfall and snowfall. By combining phenological and meteorological data, Earth observation platforms and sensors were used to assess trends in precipitation, temperature, and vegetation phenology in Bhutan from 1996 through 2017. This project studied precipitation using Climate Hazards Center Infrared Precipitation with Station data, analyzed temperature using the Famine Early Warning System Network Land Data Assimilation System, incorporated elevation data from the Shuttle Radar Topography Mission, and assessed vegetation phenology using Aqua and Terra Moderate Resolution Imaging Spectroradiometer (MODIS) to evaluate climate variability and its effects on Bhutan. In situ temperature and precipitation data were also collected from the Himalayan Environmental Rhythm Observation and Evaluation System (HEROES) project and Bhutan’s National Center for Hydrology and Meterology. Modeled and in situ data showed similar trends in precipitation and temperature for the Thimpu, Chhukha, and Gasa regions. Aqua and Terra MODIS phenology data were variable from year to year. However, the data suggested a late onset of spring green up. Partners at the Bhutan Foundation and locally in Bhutan can use this information to better understand and monitor climate variability and replicate these methods for future analysis.

Kinley Dorji↗

Bhutan Water Resources Project Summary - Comparing Precipitation, Temperature, and Phenology Data Trends in Bhutan to Assist the Himalayan Environmental Rhythm Observation and Evaluation System (HEROES) Project

Himalayan countries, including Bhutan, have become vulnerable to warming trends which result in increasing temperature and variable rainfall and snowfall. By combining phenological and meteorological data, Earth observation platforms and sensors were used to assess trends in precipitation, temperature, and vegetation phenology in Bhutan from 1996 through 2017. This project studied precipitation using Climate Hazards Center Infrared Precipitation with Station data, analyzed temperature using the Famine Early Warning System Network Land Data Assimilation System, incorporated elevation data from the Shuttle Radar Topography Mission, and assessed vegetation phenology using Aqua and Terra Moderate Resolution Imaging Spectroradiometer (MODIS) to evaluate climate variability and its effects on Bhutan. In situ temperature and precipitation data were also collected from the Himalayan Environmental Rhythm Observation and Evaluation System (HEROES) project and Bhutan’s National Center for Hydrology and Meterology. Modeled and in situ data showed similar trends in precipitation and temperature for the Thimpu, Chhukha, and Gasa regions. Aqua and Terra MODIS phenology data were variable from year to year. However, the data suggested a late onset of spring green up. Partners at the Bhutan Foundation and locally in Bhutan can use this information to better understand and monitor climate variability and replicate these methods for future analysis.

DEVELOP Project Summary↗

Data from A Designed Heme-[4Fe-4S] Metalloenzyme Catalyzes Sulfite Reduction Like the Native Enzyme

Enzymatic reduction of oxyanions such as sulfite (SO32−) requires the delivery of multiple electrons and protons, a feat accomplished by cofactors tailored for catalysis and electron transport. Replicating this strategy in protein scaffolds may expand the range of enzymes that can be designed de novo. Mirts et al. selected a scaffold protein containing a natural heme cofactor and then engineered a cavity suitable for binding a second cofactor—an iron-sulfur cluster (see the Perspective by Lancaster). The resulting designed enzyme was optimized through rational mutation into a catalyst with spectral characteristics and activity similar to that of natural sulfite reductases.

Catalysis↗

Interferometric SAR modelling of near surface data to improve geological model in the Surat Basin, Australia

Here we present a study on geophysical inverse modelling for subsurface structural properties of an unconventional hydrocarbon site that was monitored previously by Interferometric Synthetic Aperture Radar (InSAR) technology for surface deformation. A static three-dimensional geomodel along with extracted property maps replicates the depth of each underlying stratigraphic unit and structural feature with the density of each geological layer. We examine the hypothesis that integration of elastic properties of each formation layer with InSAR observations in a stratified elastic medium will lead to a viscoelastic geophysical inverse problem that can be solved to estimate fractional volume change at the reservoir level. Moreover, we examine synthetic scenarios in which the elastic properties of the formations are perturbed before determining the resulting impact on the rate of surface deformation. The results show that although the slope of underlying formations, their density and depth can define the extent and pattern of a deformation signal, their properties have a marginal impact on volumetric change compared to the dense network of shallow depth Coal Seam Gas (CSG) mining wells. Besides, it is also demonstrated that the inversion of InSAR deformation maps can resolve the uncertainties associated with low-resolution seismic interpretation as well as filling the data gaps within seismic acquisitions. A significant contribution of this investigation to the geological basin modelling involves a) introducing a remote and non-invasive technology such as InSAR to improve geophysical mapping of subsurface structures such as faults in areas with sparse or no reflective seismic information, and b) applying a multi-layer viscoelastic geophysical source model for an unconventional hydrocarbon reservoir such as CSG.

58 GEOSCIENCES↗

SPRUCE Peat Mercury, Methylmercury and Sulfur Concentrations from Experimental Plot Cores, 2012

This data set reports the results of analyses of peat core samples for total mercury and methylmercury, as well as carbon, nitrogen and sulfur. Samples were collected as part of a larger sampling campaign from the SPRUCE experimental study plots located in the S1-Bog. From 2012-08-13 to 2012-10-15, a team of SPRUCE investigators and collaborators collected core samples of peat in the SPRUCE experimental plots. The goal was to characterize the biological, physical, and chemical characteristics of peat, and how those characteristics changed throughout the depth profile of the bog, prior to the initialization of the SPRUCE experimental warming and CO2 treatments. Cores were collected from 16 experimental plots; peat cores were collected from the hummock and hollow surfaces to depths of 300 cm in 10 cm, 25, and 50 cm increments (Pierce et al, 2022). Three replicate cores were collected from both hummock and hollow locations in each plot. The coring locations within each plot were mapped. This dataset contains one file in comma separated (*.csv) format. User Note: The coring descriptions and some reported data are the same as in the related data set, Iverson et al. (2014). Samples for mercury and carbon, nitrogen and sulfur analyses by the University of Minnesota were collected as part of this sampling campaign.

54 ENVIRONMENTAL SCIENCES↗

Heating effects on pyrogenic organic matter mass loss and temperature in a sand matrix in a lab setting from 2022

This dataset contains data associated with the preprint “A laboratory method for simulating the effects of subsequent fires on pyrogenic organic matter at different exposure depths in a sand matrix” (https://doi.org/10.1101/2024.07.30.605814), which has been accepted for publication in the International Journal of Wildland Fire. The dataset was generated to investigate the effects of subsequent fires on preexisting pyrogenic organic matter (PyOM) at different soil depths. Specifically, we designed a laboratory method to simulate soil heating from above, applying realistic heat flux profiles (High, Low, Control) derived from jack pine (Pinus banksiana Lamb.) log burns. Using a cone calorimeter, these profiles were applied to buried jack pine PyOM (produced at 350°C) in a sand matrix pyrocosm to examine PyOM mass loss at different depths (surface, 1 cm, 5 cm). Each treatment (e.g., High heat flux at 1 cm depth) was applied once to five replicates in a pyrocosm.The dataset includes mass loss fraction of PyOM and time-series temperature profiles (measured with type K thermocouples). Additionally, calibration datasets for high and low heat flux profiles are provided, including programmed heat flux profile data and three sets of calibration results. All datasets are in .csv format and were analyzed in R using code found at https://github.com/MengmengLuo/Reburning-pyrogenic-organic-matter-A-laboratory-method-for-dosing-dynamic-heat-fluxes-from-above. This dataset supports research on PyOM transformations during subsequent fires, and methodological advancements in simulating soil heating. It can be used to explore fire-induced PyOM alterations across different fire intensities and soil depths.

54 ENVIRONMENTAL SCIENCES↗

Development of a Methodology to Gather Seated Anthropometry in a Microgravity Environment

The Constellation Program's Crew Exploration Vehicle (CEV) is required to accommodate the full population range of crewmembers according to the anthropometry requirements stated in the Human-Systems Integration Requirement (HSIR) document (CxP70024). Seated height is one of many critical dimensions of importance to the CEV designers in determining the optimum seat configuration in the vehicle. Changes in seated height may have a large impact to the design, accommodation, and safety of the crewmembers. Seated height can change due to elongation of the spine when crewmembers are exposed to microgravity. Spinal elongation is the straightening of the natural curvature of the spine and the expansion of inter-vertebral disks. This straightening occurs due to fluid shifts in the body and the lack of compressive forces on the spinal vertebrae. Previous studies have shown that as the natural curvature of the spine straightens, an increase in overall height of 3% of stature occurs which has been the basis of the current HSIR requirements. However due to variations in the torso/leg ratio and impact of soft tissue, data is nonexistent as to how spinal elongation specifically affects the measurement of seated height. In order to obtain this data, an experiment was designed to collect spinal elongation data while in a seated posture in microgravity. The purpose of this study was to provide quantitative data that represents the amount of change that occurs in seated height due to spinal elongation in microgravity environments. Given the schedule and budget constraints of ISS and Shuttle missions and the uniqueness of the problem, a methodology had to be developed to ensure that the seated height measurements were accurately collected. Therefore, simulated microgravity evaluations were conducted to test the methodology and procedures of the experiment. This evaluation obtained seat pan pressure and seated height data to a) ensure that the lap restraint provided sufficient restraint to eliminate any gap between the subject s gluteal surface and the seat pan and b) to document any necessary design and procedural changes needed due to the microgravity environment. The methodology and setup used during the simulated microgravity evaluations was replicable to the proposed methodology and setup for in-space missions. A flight-like Shuttle seat, pressure sensors, anthropometer, and existing hardware was used to measure seated height and contact area while experiencing microgravity. The outlying buttock and thigh surface contact areas were collected to determine if the subjects were in contact with the seat pan, while a measurer recorded their seated height with an anthropometer. The Anthropometry and Biomechanics Facility (ABF) completed data collection from three microgravity flights to assess the restraint methods and techniques to be used for the in-flight procedures performed by the crewmembers in orbit. The first flight demonstrated that the restraint system on the seat, used in a nominal configuration, did not sufficiently restrain a person in the seat. The results showed the subjects were not in full contact with the seat pan, resulting in inaccurate sitting height data. Thus, a second flight was conducted to test different restraint system options. The results showed that by 1) changing the restraint system from the nominal 3-points of the 5-point harness, which is used for crewmembers when fully suited with emergency equipment, and 2) rerouting the lap straps around the joint of the backrest, where the backrest and seat pan are joined, resulted in the optimal method to restrain a subject. This rerouting method allowed for the anchor location to change and pull the subjects back into the seat instead of being anchored at the side of the subjects thighs. The results from the third flight validated the final restraint system, which resulted in a verified methodology for collecting seated anthropometry to ultimately determine the amount of spil elongation in a microgravity environment.

Rajulu, Sudhakar↗

Lessons from modENCODE

Consortium aimed to map functional elements—including transcripts, chromatin marks, regulatory factor binding sites, and origins of DNA replication—in the model organisms Drosophila melanogaster and Caenorhabditis elegans. During its five-year span, the consortium conducted more than 2,000 genome-wide assays in developmentally staged animals, dissected tissues, and homogeneous cell lines. Analysis of these data sets provided foundational insights into genome, epigenome, and transcriptome structure and the evolutionary turnover of regulatory pathways. These studies facilitated a comparative analysis with similar data types produced by the ENCODE Consortium for human cells. Genome organization differs drastically in these distant species, and yet quantitative relationships among chromatin state, transcription, and cotranscriptional RNA processing are deeply conserved. Of the many biological discoveries of the modENCODE Consortium, we highlight insights that emerged from integrative studies. We focus on operational and scientific lessons that may aid future projects of similar scale or aims in other, emerging model systems.

59 BASIC BIOLOGICAL SCIENCES↗