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At least 829 records · Page 46

Milli-Arcsecond (MAS) Imaging with SmallSat Enabled Super-resolution

The objective of this project is to demonstrate a new imaging technology with unprecedented capabilities for scientific exploration. This technology innovation will enable extremely high-resolution imaging capability, otherwise unattainable with conventional approaches. It is based on a unique combination of novel diffractive optical sensing (photon sieve), advanced image processing, and small satellite formation flying. The spatial resolution of current solar instruments are more than 100 times coarser than the size of energy dissipation features in coronal heating (<100 km) since conventional optics cannot be figured to near diffraction-limited accuracy at extreme ultraviolet (EUV) wavelengths. This project will demonstrate the feasibility of imaging of a few milli-arcseconds (MAS) to study the structure and development of these dissipation regions.

Farzad Kamalabadi↗

Physics of the Seasonal Sea Ice Zone

The seasonal sea ice zone encompasses the region between the winter maximum and summer minimum sea ice extent. In both the Arctic and Antarctic, the majority of the ice cover can now be classified as seasonal. Here, we review the sea ice physics that governs the evolution of seasonal sea ice in the Arctic and Antarctic, spanning sea ice growth, melt, and dynamics and including interactions with ocean surface waves as well as other coupled processes. The advent of coupled wave–ice modeling and discrete-element modeling, together with improved and expanded satellite observations and field campaigns, has yielded advances in process understanding. Many topics remain in need of further investigation, including rheologies appropriate for seasonal sea ice, wave-induced sea ice fracture, welding for sea ice freeze-up, and the distribution of snow on seasonal sea ice. Future research should aim to redress biases (such as disparities in focus between the Arctic and Antarctic and between summer and winter processes) and connect observations to modeling across spatial scales.

sea ice↗

Space Weather Investigation Frontier (SWIFT) Mission Concept: Continuous Distributed Observations of Geo-Effective, Heliospheric Structures from the Vantage Points of Sun-Earth L1 and Sub- L1

Continuous, in-situ, multi-point observations along the Sun-Earth line at and inside the Lagrange point L1 (sub-L1) will enable a better understanding of the three-dimensional structure and temporal evolution of heliospheric structures that drive terrestrial space weather. The proposed SWIFT (Space Weather Investigation Frontier) mission will use a new solar sail propulsion system developed by NASA to enable a suite of science instruments onboard a smallsat to maintain observations along the Sun-Earth line, sub-L1, for extended periods. Three identically instrumented small spacecraft at L1 will fly in concert with the sailcraft at sub-L1 in an optimized tetrahedron constellation, covering distances between 10 to 100’s of Earth radii. This viewing geometry will enable scientists to distinguish between local and global processes driving space weather by revealing the spatial characteristics, temporal evolution, and geo-effectiveness of small- to meso-scale solar wind structures and substructures of macro-scale structures, such as interplanetary coronal mass ejections (ICMEs) and stream interaction regions (SIRs). In addition, real time measurements of earth-bound heliospheric structures from sub-L1 will improve our current forecasting lead-times by up to 35 percent. This paper will provide an overview of the proposed SWIFT science and mission concept.

Spacecraft Propulsion↗

Space Weather Investigation Frontier (SWIFT)

Continuous, in-situ, multi-point observations along the Sun-Earth line at and inside the Lagrange point L1 (sub-L1) will enable a better understanding of the three-dimensional structure and temporal evolution of heliospheric structures that drive terrestrial space weather. The proposed SWIFT (Space Weather Investigation Frontier) mission will use a new solar sail propulsion system developed by NASA to enable a suite of science instruments onboard a smallsat to maintain observations along the Sun-Earth line, sub-L1, for extended periods. Three identically instrumented small spacecraft at L1 will fly in concert with the sailcraft at sub-L1in an optimized tetrahedron constellation, covering distances between 10 to 100’s of Earth radii. This viewing geometry will enable scientists to distinguish between local and global processes driving space weather by revealing the spatial characteristics, temporal evolution, and geo-effectiveness of small-to meso-scale solar wind structures and substructures of macro-scale structures, such as interplanetary coronal mass ejections (ICMEs) and stream interaction regions (SIRs). In addition, real time measurements of earth-bound heliospheric structures from sub-L1 will improve our current forecasting lead-times by up to 35 percent. This paper will provide an overview of the proposed SWIFT science and mission concept.

Heliophysics↗

Evaluation of Climate Fingerprinting Sounder Product (ClimFiSP) Air Temperature and H2O Trends

Climate fingerprinting Sounder Product (ClimFiSP) provides gridded (0.5x0.5) daily skin temperature, surface emissivity, air temperature, water vapor, trace gases, and cloud properties, which derived from IR hyper-spectral radiance measured by AIRS on Aqua and CrIS on SNPP and JPSS series. In this work, the ClimFiSP daily air temperature and H2O were retrieved on 98 pressure levels by applying the spectral fingerprint algorithm on 0.5x0.5 gridded daily mean radiances from Climate Hyperspectral Infrared Radiance Product (CHIRP). CHIRP is a stable climate-quality radiance time series spanning AIRS and CrIS. The air temperature and H2O monthly data and trends were calculated from the more than two decades long CHIRP AIRS data. Troposphere warming and stratosphere cooling can be seen in both ClimFiSP and ERA5 air temperature data. The ClimFiSP air temperature trends are also compared with the MW sounding air temperature trends to validate the ClimFiSP air temperature results. The H2O trends on upper troposphere are evaluated by comparing with the ERA5 H2O trends, and results show a reasonable agreement with two sets of results. The ClimFiSP algorithm provides a unique and fast way to retrieve the spatial-temporal change in climate variables from the corresponding change in radiances, gridded at the same spatial-temporal scale. This greatly facilitates the procession of long-term climate data records.

ClimFiSP↗

Surface lattice engineering for fine-tuned spatial configuration of nanocrystals

Hybrid nanocrystals combining different properties together are important multifunctional materials that underpin further development in catalysis, energy storage, et al., and they are often constructed using heterogeneous seeded growth. Their spatial configuration (shape, composition, and dimension) is primarily determined by the heterogeneous deposition process which depends on the lattice mismatch between deposited material and seed. Precise control of nanocrystals spatial configuration is crucial to applications, but suffers from the limited tunability of lattice mismatch. Here, we demonstrate that surface lattice engineering can be used to break this bottleneck. Surface lattices of various Au nanocrystal seeds are fine-tuned using this strategy regardless of their shape, size, and crystalline structure, creating adjustable lattice mismatch for subsequent growth of other metals; hence, diverse hybrid nanocrystals with fine-tuned spatial configuration can be synthesized. This study may pave a general approach for rationally designing and constructing target nanocrystals including metal, semiconductor, and oxide.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Sensitivities of subgrid-scale physics schemes, meteorological forcing, and topographic radiation in atmosphere-through-bedrock integrated process models: a case study in the Upper Colorado River basin

Abstract. Mountain hydrology is controlled by interacting processes extending from the atmosphere through the bedrock. Integrated process models (IPMs), one of the main tools needed to interpret observations and refine conceptual models of the mountainous water cycle, require meteorological forcing that simulates the atmospheric process to predict hydroclimate then subsequently impacts surface–subsurface hydrology. Complex terrain and extreme spatial heterogeneity in mountainous environments drive uncertainty in several key considerations in IPM configurations and require further quantification and sensitivity analyses. Here, we present an IPM using the Weather Research and Forecasting (WRF) model which forces an integrated hydrologic model, ParFlow-CLM, implemented over a domain centered over the East River watershed (ERW), located in the Upper Colorado River basin (UCRB). The ERW is a heavily instrumented 300 km2 region in the headwaters of the UCRB near Crested Butte, CO, with a growing atmosphere-through-bedrock observation network. Through a series of experiments in the water year 2019 (WY19), we use four meteorological forcings derived from commonly used reanalysis datasets, three subgrid-scale physics scheme configurations in WRF, and two terrain shading options within WRF to test the relative importance of these experimental design choices for key hydrometeorological metrics including precipitation and snowpack, as well as evapotranspiration, groundwater storage, and discharge simulated by the ParFlow-CLM. Our hypothesis is that uncertainty from synoptic-scale forcings produces a much larger spread in surface–subsurface hydrologic fields than subgrid-scale physics scheme choice. Results reveal that the WRF subgrid-scale physics configuration leads to larger spatiotemporal variance in simulated hydrometeorological conditions, whereas variance across meteorological forcing with common subgrid-scale physics configurations is more spatiotemporally constrained. Despite reasonably simulating precipitation, a delay in simulated discharge peak is due to a systematic cold bias across WRF simulations, suggesting the need for bias correction. Discharge shows greater variance in response to the WRF simulations across subgrid-scale physics schemes (26 %) rather than meteorological forcing (6 %). The topographic radiation option has minor effects on the watershed-average hydrometeorological processes but adds profound spatial heterogeneity to local energy budgets (±30 W m−2 in shortwave radiation and 1 K air temperature differences in late summer). This is the first presentation of sensitivity analyses that provide support to help guide the scientific community to develop observational constraints on atmosphere-through-bedrock processes and their interactions.

54 ENVIRONMENTAL SCIENCES↗

Mapping Impervious Surfaces Globally at 30m Resolution Using Global Land Survey Data

Impervious surfaces, mainly artificial structures and roads, cover less than 1% of the world's land surface (1.3% over USA). Regardless of the relatively small coverage, impervious surfaces have a significant impact on the environment. They are the main source of the urban heat island effect, and affect not only the energy balance, but also hydrology and carbon cycling, and both land and aquatic ecosystem services. In the last several decades, the pace of converting natural land surface to impervious surfaces has increased. Quantitatively monitoring the growth of impervious surface expansion and associated urbanization has become a priority topic across both the physical and social sciences. The recent availability of consistent, global scale data sets at 30m resolution such as the Global Land Survey from the Landsat satellites provides an unprecedented opportunity to map global impervious cover and urbanization at this resolution for the first time, with unprecedented detail and accuracy. Moreover, the spatial resolution of Landsat is absolutely essential to accurately resolve urban targets such a buildings, roads and parking lots. With long term GLS data now available for the 1975, 1990, 2000, 2005 and 2010 time periods, the land cover/use changes due to urbanization can now be quantified at this spatial scale as well. In the Global Land Survey - Imperviousness Mapping Project (GLS-IMP), we are producing the first global 30 m spatial resolution impervious cover data set. We have processed the GLS 2010 data set to surface reflectance (8500+ TM and ETM+ scenes) and are using a supervised classification method using a regression tree to produce continental scale impervious cover data sets. A very large set of accurate training samples is the key to the supervised classifications and is being derived through the interpretation of high spatial resolution (approx. 2 m or less) commercial satellite data (Quickbird and Worldview2) available to us through the unclassified archive of the National Geospatial Intelligence Agency (NGA). For each continental area several million training pixels are derived by analysts using image segmentation algorithms and tools and then aggregated to the 30m resolution of Landsat. Here we will discuss the production/testing of this massive data set for Europe, North and South America and Africa, including assessments of the 2010 surface reflectance data. This type of analysis is only possible because of the availability of long term 30m data sets from GLS and shows much promise for integration of Landsat 8 data in the future.

global land survey↗

The United States' Next Generation of Atmospheric Composition and Coastal Ecosystem Measurements: NASA's Geostationary Coastal and Air Pollution Events (GEO-CAPE) Mission

The Geostationary Coastal and Air Pollution Events (GEO-CAPE) mission was recommended by the National Research Council's (NRC's) Earth Science Decadal Survey to measure tropospheric trace gases and aerosols and coastal ocean phytoplankton, water quality, and biogeochemistry from geostationary orbit, providing continuous observations within the field of view. To fulfill the mandate and address the challenge put forth by the NRC, two GEO-CAPE Science Working Groups (SWGs), representing the atmospheric composition and ocean color disciplines, have developed realistic science objectives using input drawn from several community workshops. The GEO-CAPE mission will take advantage of this revolutionary advance in temporal frequency for both of these disciplines. Multiple observations per day are required to explore the physical, chemical, and dynamical processes that determine tropospheric composition and air quality over spatial scales ranging from urban to continental, and over temporal scales ranging from diurnal to seasonal. Likewise, high-frequency satellite observations are critical to studying and quantifying biological, chemical, and physical processes within the coastal ocean. These observations are to be achieved from a vantage point near 95deg-100degW, providing a complete view of North America as well as the adjacent oceans. The SWGs have also endorsed the concept of phased implementation using commercial satellites to reduce mission risk and cost. GEO-CAPE will join the global constellation of geostationary atmospheric chemistry and coastal ocean color sensors planned to be in orbit in the 2020 time frame.

Atmospheric composition↗

Cognitive factors associated with immersion in virtual environments

Immersion into the dataspace provided by a computer, and the feeling of really being there or 'presence', are commonly acknowledged as the uniquely important features of virtual reality environments. How immersed one feels appears to be determined by a complex set of physical components and affordances of the environment, and as yet poorly understood psychological processes. Pimentel and Teixeira say that the experience of being immersed in a computer-generated world involves the same mental shift of 'suspending your disbelief for a period of time' as 'when you get wrapped up in a good novel or become absorbed in playing a computer game'. That sounds as if it could be right, but it would be good to get some evidence for these important conclusions. It might be even better to try to connect these statements with theoretical positions that try to do justice to complex cognitive processes. The basic precondition for understanding Virtual Reality (VR) is understanding the spatial representation systems that localize our bodies or egocenters in space. The effort to understand these cognitive processes is being driven with new energy by the pragmatic demands of successful virtual reality environments, but the literature is largely sparse and anecdotal.

Psotka, Joseph↗

An Approach to Characterizing Spatial Aspects of Image System Blur

In imaging applications, such as X-ray radiography, the experimental system setup and data capture process introduce system blur and distortion. In images taken with thick scintillators, a spatially varying system blur is observed, requiring a nonstandard approach to blur and distortion estimation and removal. We demonstrate an approach to estimation of local point spread functions using checkerboard radiographs collected at the Naval Research Laboratory and extend that into a map defining the kernel over the camera field of view.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

A HPC Theory-Guided Machine Learning Cyberinfrastructure for Communicating Hydrometeorological Data Across Scales

High-resolution predictions of hydrometeorological variables are critical for supporting hydropower generation decisions and flood control at hydroelectric power plants. Traditional climate and hydrologic models rely on the numerical simulation of detailed physical processes. Therefore, running these simulations is time-, labor-, and computation-intensive. Improving the spatial and temporal resolution in these modeling outputs could lead to cubic increases in both the simulation time and computational demands, rendering high-resolution hydrometeorological predictions expensive and impractical. Many past studies apply the super resolution (SR) technique to downscale climate models using deep learners. However, deep learners are deemed “black-boxes,” as their derivation processes from low-resolution outputs to high-resolution outputs are often hidden. Their results are difficult for domain scientists to interpret and validate. Thus, there is a need for an exploratory machine learning approach that can partially integrate domain-specific theory and knowledge into the data-driven mapping process between simulation outputs of different spatial scales. The domain-specific theory and knowledge can be incorporated into the data model through an inductive approach in which process-related environmental variables are used and analyzed as key drivers (i.e., environmental surrogates) to reflect the complex physical processes. Many of these variables, such as land use land cover, soil types, topography, digital elevation, air temperature, and various watershed characteristics, can be directly measured through sensors or remote sensing techniques. Additionally, SR applications that can downscale hydrological and hydrodynamics models to efficiently produce high-resolution (1 m) flood depth grids are still rare. Since the flood depth grid can be used to support critical decisions for flood control operation at hydroelectric power plants, it is crucial to enable an SR-based capability for interpolating high-resolution flood inundation maps.

13 HYDRO ENERGY↗

DECOVALEX-2023: An international collaboration for advancing the understanding and modeling of coupled thermo-hydro-mechanical-chemical (THMC) processes in geological systems

The DECOVALEX initiative is an international research collaboration (www.decovalex.org), initiated in 1992, for advancing the understanding and modeling of coupled thermo-hydro-mechanical-chemical (THMC) processes in geological systems. DECOVALEX stands for “DEvelopment of COupled Models and VALidation against EXperiments”. The creation of this international initiative was motivated by the recognition that prediction of these coupled effects is an essential part of the performance and safety assessment of geologic disposal systems for radioactive waste and spent nuclear fuel. DECOVALEX emphasizes joint analysis and comparative modeling of the complex perturbations and coupled processes in geologic repositories and how these impact long-term performance predictions. The most recent phase of the DECOVALEX Project, here referred to as DECOVALEX-2023, started in early 2020 and ended in late 2023. More than fifty research teams associated with 17 international DECOVALEX partner organizations participated in the comparative evaluation of eight modeling tasks covering a wide range of spatial and temporal scales, geological formations, and coupled processes. This Virtual Special Issue on DECOVALEX-2023 provides an in-depth overview of these collaborative research efforts and how these have advanced the state-of-the-art of understanding and modeling coupled THMC processes. While primarily focused on radioactive waste, much of the work included here has wider application to many geoengineering topics.

Coupled processes↗

Structure and Rotation of the Solar Interior: Initial Results from the MDI Medium-L Program

The medium-l program of the Michelson Doppler Imager instrument on board SOHO provides continuous observations of oscillation modes of angular degree, l, from 0 to approximately 300. The data for the program are partly processed on board because only about 3% of MDI observations can be transmitted continuously to the ground. The on-board data processing, the main component of which is Gaussian-weighted binning, has been optimized to reduce the negative influence of spatial aliasing of the high-degree oscillation modes. The data processing is completed in a data analysis pipeline at the SOI Stanford Support Center to determine the mean multiplet frequencies and splitting coefficients. The initial results show that the noise in the medium-l oscillation power spectrum is substantially lower than in ground-based measurements. This enables us to detect lower amplitude modes and, thus, to extend the range of measured mode frequencies. This is important for inferring the Sun's internal structure and rotation. The MDI observations also reveal the asymmetry of oscillation spectral lines. The line asymmetries agree with the theory of mode excitation by acoustic sources localized in the upper convective boundary layer. The sound-speed profile inferred from the mean frequencies gives evidence for a sharp variation at the edge of the energy-generating core. The results also confirm the previous finding by the GONG (Gough et al., 1996) that, in a thin layer just beneath the convection zone, helium appears to be less abundant than predicted by theory. Inverting the multiplet frequency splittings from MDI, we detect significant rotational shear in this thin layer. This layer is likely to be the place where the solar dynamo operates. In order to understand how the Sun works, it is extremely important to observe the evolution of this transition layer throughout the 11-year activity cycle.

Kosovichev, A. G.↗

Soil Moisture: The Hydrologic Interface Between Surface and Ground Waters

A hypothesis is presented that many hydrologic processes display a unique signature that is detectable with microwave remote sensing. These signatures are in the form of the spatial and temporal distributions of surface soil moisture. The specific hydrologic processes that may be detected include groundwater recharge and discharge zones, storm runoff contributing areas, regions of potential and less than potential evapotranspiration (ET), and information about the hydrologic properties of soils. In basin and hillslope hydrology, soil moisture is the interface between surface and ground waters.

Engman, Edwin T.↗

Representation of Nucleation Mode Microphysics in a Global Aerosol Model with Sectional Microphysics

In models, nucleation mode (1 nm<Dp <10 nm) particle microphysics can be represented explicitly with aerosol microphysical processes or can be parameterized to obtain the growth and survival of nuclei to the model's lower size boundary. This study investigates how the representation of nucleation mode microphysics impacts aerosol number predictions in the TwO-Moment Aerosol Sectional (TOMAS) aerosol microphysics model running with the GISS GCM II-prime by varying its lowest diameter boundary: 1 nm, 3 nm, and 10 nm. The model with the 1 nm boundary simulates the nucleation mode particles with fully resolved microphysical processes, while the model with the 10 nm and 3 nm boundaries uses a nucleation mode dynamics parameterization to account for the growth of nucleated particles to 10 nm and 3 nm, respectively.We also investigate the impact of the time step for aerosol microphysical processes (a 10 min versus a 1 h time step) to aerosol number predictions in the TOMAS models with explicit dynamics for the nucleation mode particles (i.e., 3 nm and 1 nm boundary). The model with the explicit microphysics (i.e., 1 nm boundary) with the 10 min time step is used as a numerical benchmark simulation to estimate biases caused by varying the lower size cutoff and the time step. Different representations of the nucleation mode have a significant effect on the formation rate of particles larger than 10 nm from nucleated particles (J10) and the burdens and lifetimes of ultrafinemode (10 nm≤Dp ≤70 nm) particles but have less impact on the burdens and lifetimes of CCN-sized particles. The models using parameterized microphysics (i.e., 10 nm and 3 nm boundaries) result in higher J10 and shorter coagulation lifetimes of ultrafine-mode particles than the model with explicit dynamics (i.e., 1 nm boundary). The spatial distributions of CN10 (Dp ≥10 nm) and CCN(0.2 %) (i.e., CCN concentrations at 0.2%supersaturation) are moderately affected, especially CN10 predictions above ∼700 hPa where nucleation contributes most strongly to CN10 concentrations. The lowermost-layer CN10 is substantially improved with the 3 nm boundary (compared to 10 nm) in most areas. The overprediction in CN10 with the 3 nm and 10 nm boundaries can be explained by the overprediction of J10 or J3 with the parameterized microphysics, possibly due to the instantaneous growth rate assumption in the survival and growth parameterization. The errors in CN10 predictions are sensitive to the choice of the lower size boundary but not to the choice of the time step applied to the microphysical processes. The spatial distribution of CCN(0.2 %) with the 3 nm boundary is almost identical to that with the 1 nm boundary, but that with the 10 nm boundary can differ more than 10-40% in some areas. We found that the deviation in the 10 nm simulations is partly due to the longer time step (i.e., 1 h time step used in the 10 nm simulations compared to 10 min time step used in the benchmark simulations), but, even with the same time step, the 10 nm cutoff showed noticeably higher errors than the 3 nm cutoff. In conclusion, we generally recommend using a lower diameter boundary of 3 nm for studies focused on aerosol indirect effects but down to 1 nm boundary for studies focused on CN10 predictions or nucleation.

microphysics↗

11-th order of accuracy for numerical solution of 3-D Poisson equation with irregular interfaces on unfitted Cartesian meshes

For the first time the optimal local truncation error method (OLTEM) with 125-point stencils and unfitted Cartesian meshes has been developed in the general 3-D case for the Poisson equation for heterogeneous materials with smooth irregular interfaces. The 125-point stencils equations that are similar to those for quadratic finite elements are used for OLTEM. The interface conditions for OLTEM are imposed as constraints at a small number of interface points and do not require the introduction of additional unknowns, i.e., the sparse structure of global discrete equations of OLTEM is the same for homogeneous and heterogeneous materials. The stencils coefficients of OLTEM are calculated by the minimization of the local truncation error of the stencil equations. These derivations include the use of the Poisson equation for the relationship between the different spatial derivatives. Such a procedure provides the maximum possible accuracy of the discrete equations of OLTEM. In contrast to known numerical techniques with quadratic elements and third order of accuracy on conforming and unfitted meshes, OLTEM with the 125-point stencils provides 11-th order of accuracy, i.e., an extremely large increase in accuracy by 8 orders for similar stencils. The numerical results show that OLTEM yields much more accurate results than high-order finite elements with much wider stencils. The increased numerical accuracy of OLTEM leads to an extremely large increase in computational efficiency. Additionally, a new post-processing procedure with the 125-point stencil has been developed for the calculation of the spatial derivatives of the primary function. The post-processing procedure includes the minimization of the local truncation error and the use of the Poisson equation. It is demonstrated that the use of the partial differential equation (PDE) for the 125-point stencils improves the accuracy of the spatial derivatives by 6 orders compared to post-processing without the use of PDE as in existing numerical techniques. At an accuracy of 0.1% for the spatial derivatives, OLTEM reduces the number of degrees of freedom by 900 - 4∙10 6 times compared to quadratic finite elements. The developed post-processing procedure can be easily extended to unstructured meshes and can be independently used with existing post-processing techniques (e.g., with finite elements).

97 MATHEMATICS AND COMPUTING↗

Spatially Resolved Top-Down Proteomics of Tissue Sections Based on a Microfluidic Nanodroplet Sample Preparation Platform

Conventional proteomics measures the averaged signal from mixed cell populations or bulk tissues, leading to the dilution of significant changes in subpopulations of cells that might serve as important biomarkers. Recent developments in bottom-up proteomics have enabled spatial mapping of cellular heterogeneity in tissue microenvironments. However, bottom-up proteomics cannot precisely infer the abundance changes of intact proteins, which are presented as proteoforms. Herein, we described a spatially resolved top-down proteomics (TDP) platform for proteoform identification and quantification directly on thin tissue sections. The spatial TDP platform consisted of a nanoPOTS (nanodroplet Processing in One pot for Trace Samples)-based sample preparation system and an LCM (laser capture microdissection)-based cell isolation system. We improved the nanoPOTS sample preparation by adding benzonase in the extraction buffer to enhance the coverage of nucleus proteins. Using ~200 cultured cells as model samples, the improved approach increased proteoform identifications from 493 to 700; newly identified proteoforms primarily corresponded to nuclear proteins. To demonstrate the spatial TDP platform in tissue samples, we analyzed LCM-isolated tissue voxels from rat brain cortex and hypothalamus regions. We quantified 426 proteoforms by combining identifications from TopPIC and TDPortal with the quantitation from ProMex. Several proteoforms corresponding to the same gene exhibited mixed abundance profiles between two tissue regions, suggesting potential PTM-specific spatial distributions. The spatial TDP workflow has prospects for biomarker discovery at proteoform level from small tissue sections.

59 BASIC BIOLOGICAL SCIENCES↗