Using a Robust Metadata Management System to Accelerate Scientific Discovery at Extreme Scales.
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The ever increasing amount of data generated by scientific simulations coupled with system I/O constraints are fueling a need for in-situ analysis techniques. Of particular interest are approaches that produce reduced data representations while maintaining the ability to redefine, extract, and study features in a post-process to obtain scientific insights. This paper presents two variants of in-situ feature extraction techniques using segmented merge trees, which encode a wide range of threshold based features. The first approach is a fast, low communication cost technique that generates an exact solution but has limited scalability. The second is a scalable, local approximation that nevertheless is guaranteed to correctly extract all features up to a predefined size. We demonstrate both variants using some of the largest combustion simulations available on leadership class supercomputers. Our approach allows state-of-the-art, feature-based analysis to be performed in-situ at significantly higher frequency than currently possible and with negligible impact on the overall simulation runtime.
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Considerable amounts and varieties of biogenic volatile organic compounds (BVOCs) are exchanged between vegetation and the surrounding air. These BVOCs play key ecological and atmospheric roles that must be adequately represented for accurately modeling the coupled biosphere–atmosphere–climate earth system. One key uncertainty in existing models is the response of BVOC fluxes to an important global change process: drought. Here, we describe the diurnal and seasonal variation in isoprene, monoterpene, and methanol fluxes from a temperate forest ecosystem before, during, and after an extreme 2012 drought event in the Ozark region of the central USA. BVOC fluxes were dominated by isoprene, which attained high emission rates of up to 35.4 mg m 2 h 1 at midday. Methanol fluxes were characterized by net deposition in the morning, changing to a net emission flux through the rest of the daylight hours. Net flux of CO 2 reached its seasonal maximum approximately a month earlier than isoprenoid fluxes, which highlights the differential response of photosynthesis and isoprenoid emissions to progressing drought conditions. Nevertheless, both processes were strongly suppressed under extreme drought, although isoprene fluxes remained relatively high compared to reported fluxes from other ecosystems. Methanol exchange was less affected by drought throughout the season, confirming the complex processes driving biogenic methanol fluxes. The fraction of daytime (7–17 h) assimilated carbon released back to the atmosphere combining the three BVOCs measured was 2% of gross primary productivity (GPP) and 4.9% of net ecosystem exchange (NEE) on average for our whole measurement campaign, while exceeding 5% of GPP and 10% of NEE just before the strongest drought phase. In conclusion, the MEGANv2.1 model correctly predicted diurnal variations in fluxes driven mainly by light and temperature, although further research is needed to address model BVOC fluxes during drought events.
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Genomes reveal nutrient stress patterns Within the surface ocean, nitrogen, iron, and phosphorous can all be limiting nutrients for phytoplankton depending on location. Ustick et al. used the prevalence of Prochlorococcus genes involved in nutrient acquisition to develop maps of inferred nutrient stress across the global ocean (see the Perspective by Coleman). They found broad patterns of limitation consistent with an Earth system model and nutrient addition experiments. Leveraging metagenomic data in this manner is an appealing approach that will help to expand our understanding of the biogeochemistry in the vast open ocean. Science , this issue p. 287 ; see also p. 239
We employ Monte Carlo simulations to study the relaxation properties of the two-dimensional Coulomb glass in disordered semiconductors and the three-dimensional Bose glass in type-II superconductors in the presence of extended linear defects. We investigate the effects of adding non-zero random on-site energies from different distributions on the properties of the correlation-induced Coulomb gap in the density of states (DOS) and on the non-equilibrium aging kinetics highlighted by the density autocorrelation functions. Here, we also probe the sensitivity of the system’s equilibrium and non-equilibrium relaxation properties to instantaneous changes in the density of charge carriers in the Coulomb glass or flux lines in the Bose glass.
In recent years, streaming-based data processing has been gaining substantial traction for dealing with overwhelming data generated by real-time applications, from both enterprise sources and scientific computing. In this work, however, we look at an emerging class of scientific data with Near Real-Time (NRT) requirement, in which data is typically generated in a bursty fashion with the near real-time constraints being applied primarily between bursts, rather than within a stream. A key challenge for this types of data sources is that the processing time per data element is not uniform, and not always feasible to predict. Given the observations on the increasing unpredictability of compute load and system dynamics, this work looks to adapt streaming-based approach to the context of this new class of large experiments and simulations that have complex run-time control and analysis issues. In particular, we deploy a novel two-tier scheme for handling the increasing unpredictability of runtime behaviors: Instead of relying on determining what and where to run the scientific workflows beforehand or partial dynamically, the decision will also be adaptively enhanced online according to system runtime status. This is enabled by embedding workflow along with data streams. Specifically, we break data outputs generated from experiments or simulations into multiple self-describing "chunks", which we call active data objects. As such, if there is a transient hotspot observed, a data object with unfinished workflow pipeline can break its previous schedule and search for a least loaded location to continue the execution. Our preliminary experiment results based on synthetic workloads demonstrate the proposed active workflow system as a very promising solution by outperforming the state-of-the-art semi-dynamic workflow schedulers with an improved workflow completion time, as well as a good scalability.
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The characteristics of Madden-Julian Oscillation (MJO) events that strengthen and weaken over the Maritime Continent (MC) are examined using long-term satellite observations and reanalysis datasets. The MJO weakens twice as often as it strengthens over the MC, with weakening MJOs being twice as likely during El Niño years compared to La Niña years and the reverse being true for MJO strengthening events. Weakening MJOs are characterized by large positive sea-surface temperature (SST) and moist-static energy (MSE) anomalies in the southern hemisphere (SH) of the MC compared to MJO strengthening events. These anomalies correspond to more precipitation and stronger upper-level divergence in the SH compared to the NH. The north-south polarity in these variables reflects the seasonal cycle in MJO weakening over the MC. MJOs that approach the MC during the NH winter typically weaken. There is a window during the NH summer and fall in which the MJO almost always strengthens over the MC. This seasonal cycle corresponds to whether the MJO crosses the MC primarily north or south of the equator. The MJO encounters more and taller MC islands when crossing in the SH, which previous results suggest is the likely cause of the frequent weakening. The finding of a seasonal cycle in MJO weakening over the MC complements and extends previous work on the topic and highlights the importance of sampling MJOs throughout the year in future field campaigns designed to study MJO-MC interactions.