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At least 829 records · Page 46

Effects of Simulated Microgravity and LINC-Complex on Chromosome 8 of Human Mammary Cells

Previously, human breast epithelial cells were studied under simulated microgravity to determine the role of the LINC-complex in maintaining nuclear morphology and gene expression. Data from that study was used in this project to understand how the LINC-complex influences gene expression at chromosome 8 under simulated microgravity. Differentially expressed genes found in clusters typically indicate a molecular relationship amongst them. Visual and data analyses (GO, pathways) identified 51 genes within clusters on chromosome 8 across various simulated microgravity conditions that did not share any molecular relationship. Additional results also determined that cells with a disrupted LINC-complex experienced more differential gene expression than the control, and that extended periods of simulated microgravity exacerbated differential gene expression in chromosome 8 of LINC-disrupted cells. These results suggest that the stressful simulated microgravity environment coupled with disrupted biological processes, such as in the case of the LINC-complex, can increase differential gene expression in chromosomes. Future studies where additional analyses are performed to further analyze gene expression of clusters under simulated microgravity could potentially elucidate the molecular relationship amongst affected genes.

Simulated microgravity↗

Numerical Investigation of Combustor-Turbine Interactions with a Two-Stage High-Pressure Turbine Including Cooling Airflows

Combustor–turbine interactions (CTIs) are investigated by performing three-dimensional unsteady simulations using a realistic combustor and high-pressure turbine (HPT) configurations from the Energy Efficient Engine (E3) program. To understand CTIs, we compare the numerically predicted flow fields from single-component simulations (Step 1: the combustor + the first-stage stator of turbine; Step 2: the two-stage HPT imposing the time-averaged flow solution from Step 1 as the inflow boundary condition) and a fully coupled combustor–turbine simulation (Step 3) at the sea-level takeoff (SLTO) condition. In addition to three previous simulations where the cooling airflows inside the HPT had been neglected for all Step 1, Step 2, and Step 3, two new simulations of Step 2 and Step 3 take into account the cooling airflows using the source team approach. In this approach, to mimic the cooling airflows, we impose the source term at a specific area of a cooling airflow hole at the solid surfaces without making a mesh of each hole. The objective of this study is twofold. One is to investigate the effect of the presence of the cooling airflows on the aerodynamics of the combustor and HPT as well as the HPT performance. The second is to perform a detailed comparison among the calculated flowfields by two different numerical schemes, the central-difference with the standard Jameson–Schmidt–Turkel (CD-JST) scheme and the AUSM scheme. There is a noticeable difference in the hot-streak distributions at the first-stage stator. In addition, depending on the choice of the numerical scheme and the presence of the cooling airflows, an occurrence of shock waves appearing at the first-stage stator is greatly influenced. Thus, this has a noticeable impact on the HPT performance. It is shown that the estimated turbine efficiencies from Step 3 are about 7 % less than the ones from Step 2.

Combustor-turbine interaction↗

Impacts of Fully Coupling Land Surface and Flood Models on the Simulation of Large Wetlands’ Water Dynamics: The Case of the Inner Niger Delta

It is known that representing wetland dynamics in land surface modeling improves models ‘capacity to reproduce fluxes and land surface boundary conditions for atmospheric modeling in general circulation models. This study presents the development of the full coupling between the Noah-MP land surface model (LSM) and the HyMAP flood model in the NASA Land Information System and its application over the Inner Niger Delta (IND), a well-known hot-spot of strong land surface-atmosphere interactions in West Africa. Here, we define two experiments at 0.02o spatial resolution over 2002-2018 to quantify the impacts of the proposed developments on simulating IND dynamics. One represents the one-way approach for simulating land surface and flooding processes (1-WAY), i.e., Noah-MP neglects surface water availability, and the proposed two-way coupling (2-WAY), where Noah-MP takes surface water availability into account in the vertical water and energy balance. Results show that accounting for two-way interactions between Noah- MP and HyMAP over IND improves simulations of all selected hydrological variables. Compared to 1-WAY, evapotranspiration derived from 2-WAY over flooding zones doubles, increased by 0.8mm/day, resulting in an additional water loss rate of ~18,900km(exp 3)/year, ~40% drop of wetland extent during wet seasons and major improvement in simulated water level variability at multiple locations. Significant soil moisture increase and surface temperature drop were also observed. Wetland outflows decreased by 35%, resulting in a substantial a Nash-Sutcliffe coefficient improvement, from -0.73 to 0.79. It is anticipated that future developments in water monitoring and water-related disaster warning systems will considerably benefit from these findings.

Augusto Getirana↗

Quantifying physical parameterization uncertainties associated with land-atmosphere interactions in the WRF model over Amazon

The Weather Research and Forecasting (WRF) model can be used to diagnose regional land-atmosphere (L-A) coupling strength in the absence of sufficient observations but subjected to uncertainties associated with model physical parameterizations. In this study, we propose a framework to quantify and reduce model physical parameterization uncertainties associated with surface fluxes and L-A coupling. An ensemble of WRF simulations with different physical schemes is used to simulate surface fluxes and land-atmosphere coupling strength over the Amazon region. The physical parameterizations investigated include cloud microphysics (MP), land surface processes (LSM), planetary boundary layer (PBL), surface layer (SL), and cumulus (CU). We perform 120 ensemble simulations using the WRF model and different combinations of six MPs, three LSMs, six PBLs and SLs and three CUs. The measurements from the GoAMAZON field campaign and satellite data are used to evaluate model performance. A Multi-way analysis of variance (ANOVA) approach is applied to quantify the relative importance of different physics processes on L-A coupling. The Tukey’s test is used to sort schemes that have no significant differences into one group. The suite of physics that result in the best simulations of the corresponding variables are selected based on the Taylor skill score. Results show that the relative importance of processes and their interaction vary with the variables of interest. For example, CU was the most important process in modulating soil moisture, 2 m-humidity, latent heat, and net radiation. LSM showed dominant effects on 2 m-temperature and also has the largest impact on sensible heat and the lifting condensation level. The best physical parameterization ensembles show much narrower ranges of the variables of interest than the priori ensemble. Results of this study show the roles of different physical processes in modulating L-A interactions, quantify model uncertainties from physical processes, and provide insights for improving the model physics parameterizations.

Wang, Chen↗

A lightweight method for evaluating in situ workflow efficiency

Performance evaluation is crucial to understanding the behavior of scientific workflows. In this study, we target an emerging type of workflow, called in situ workflows. These workflows tightly couple components such as simulation and analysis to improve overall workflow performance. To understand the tradeoffs of various configurable parameters for coupling these heterogeneous tasks, namely simulation stride, and component placement, separately monitoring each component is insufficient to gain insights into the entire workflow behavior. Through an analysis of the state-of-the-art research, we propose a lightweight metric, derived from a defined in situ step, for assessing resource usage efficiency of an in situ workflow execution. By applying this metric to a synthetic workflow, which is parameterized to emulate behaviors of a molecular dynamics simulation, we explore two possible scenarios (Idle Simulation and Idle Analyzer) for the characterization of in situ workflow execution. In addition to preliminary results from a recently published study [11], we further exploit the proposed metric to evaluate a practical in situ workflow with a real molecular dynamics application, i.e., GROMACS. Here, experimental results show that the in transit placement (analytics on dedicated nodes) sustains a higher frequency for performing in situ analysis compared to the helper-core configuration (analytics co-allocated with simulation).

97 MATHEMATICS AND COMPUTING↗

A thermosphere/ionosphere general circulation model with coupled electrodynamics

A new simulation model of upper atmospheric dynamics is presented that includes self-consistent electrodynamic interactions between the thermosphere and ionosphere. This model calculates the dynamo effects of thermospheric winds, and uses the resultant electric fields and currents in calculating the neutral and plasma dynamics. A realistic geomagnetic field geometry is used. Sample simulations for solar maximum equinox conditions illustrate two previously predicted effects of the feedback. Near the magnetic equator, the afternoon uplift of the ionosphere by an eastward electric field reduces ion drag on the neutral wind, so that relatively strong eastward winds can occur in the evening. In addition, a vertical electric field is generated by the low-latitude wind, which produces east-west plasma drifts in the same direction as the wind, further reducing the ion drag and resulting in stronger zonal winds.

Richmond, A. D.↗

The Role of Flux Transfer Events in Solar Wind-Magnetosphere Coupling

Recent global MHD simulations of Flux Transfer Events (FTE's)[Dorelli and Bhattachar ee, JGR, 114, 2009] demonstrate that they are topologically complex flux ropes which extend large distances away from the subsolar magnetopause. Thus, FTE's represent a significant perturbation to the magnetopause magnetic field topology. Specifically, prior to the formation of the first FTE of the simulation, the dayside magnetopause has a relatively simple topology consisting of a single magnetic separator draping northward (even for southward IMF) over the dayside magnetopause (in a manner similar to the "overdraping" which occurs under northward IMF conditions). After the first FTE forms, however, the magnetopause becomes topologically more complex, consisting of multiple separators and braided flux domains. One consequence of this topological complexity is that open flux tubes have direct access to the magnetosphere near the subsolar region (such direct access is not possible during steady separator reconnection). Since the magnetopause topology affects the mapping of the solar wind electric field to the magnetosphere, an interesting question arises: What is the effect of FTE generation on the global magnetospheric convection pattern? In this talk, we address this question by exploring the differences between magnetospheric and ionospheric convection before and after the formation of the first FTE of the simulation.

Dorelli, John C.↗

The Added Value to Global Model Projections of Climate Change by Dynamical Downscaling: A Case Study over the Continental U.S. using the GISS-ModelE2 and WRF Models

Dynamical downscaling is being increasingly used for climate change studies, wherein the climates simulated by a coupled atmosphere-ocean general circulation model (AOGCM) for a historical and a future (projected) decade are used to drive a regional climate model (RCM) over a specific area. While previous studies have demonstrated that RCMs can add value to AOGCM-simulated climatologies over different world regions, it is unclear as to whether or not this translates to a better reproduction of the observed climate change therein. We address this issue over the continental U.S. using the GISS-ModelE2 and WRF models, a state-of-the-science AOGCM and RCM, respectively. As configured here, the RCM does not effect holistic improvement in the seasonally and regionally averaged surface air temperature or precipitation for the individual historical decades. Insofar as the climate change between the two decades is concerned, the RCM does improve upon the AOGCM when nudged in the domain proper, but only modestly so. Further, the analysis indicates that there is not a strong relationship between skill in capturing climatological means and skill in capturing climate change. Though additional research would be needed to demonstrate the robustness of this finding in AOGCM/RCM models generally, the evidence indicates that, for climate change studies, the most important factor is the skill of the driving global model itself, suggesting that highest priority should be given to improving the long-range climate skill of AOGCMs.

Racherla, P. N.↗

Simulation of Seasonal Snow Microwave TB Using Coupled Multi-Layered Snow Evolution and Microwave Emission Models

The accurate quantification of SWE has important societal benefits, including improving domestic and agricultural water planning, flood forecasting and electric power generation. However, passive-microwave SWE algorithms suffer from variations in TB due to snow metamorphism, difficult to distinguish from those due to SWE variations. Coupled snow evolution-emission models are able to predict snow metamorphism, allowing us to account for emissivity changes. They can also be used to identify weaknesses in the snow evolution model. Moreover, thoroughly evaluating coupled models is a contribution toward the assimilation of TB, which leads to a significant increase in the accuracy of SWE estimates.

microwave↗

Simulations of Low Mach Number Reactive Flows Coupled with Electric Fields

Applying electric fields to flames can provide an effective, non-invasive control of the combustion process. In this work, an algorithm recently introduced to handle the interactions between reactive flows and an electric field is extended to handle multiple dimensions and adaptive mesh refinement (AMR), and applied to a series of laminar flames. Experimental data allows to validate the ability of the algorithm to capture the mechanisms driving the flame response to electric fields.

electric fields↗

Simulations of Low Mach Number Reactive Flows Coupled with Electric Fields: Preprint

Applying electric fields to flames can provide an effective, non-invasive control of the combustion process. In this work, an algorithm recently introduced to handle the interactions between reactive flows and an electric field is extended to handle multiple dimensions and adaptive mesh refinement (AMR), and applied to a series of laminar flames. Experimental data allows to validate the ability of the algorithm to capture the mechanisms driving the flame response to electric fields.

electric field↗

Integrated dynamic analysis simulation of space stations with controllable solar array

A methodology is formulated and presented for the integrated structural dynamic analysis of space stations with controllable solar arrays and non-controllable appendages. The structural system flexibility characteristics are considered in the dynamic analysis by a synthesis technique whereby free-free space station modal coordinates and cantilever appendage coordinates are inertially coupled. A digital simulation of this analysis method is described and verified by comparison of interaction load solutions with other methods of solution. Motion equations are simulated for both the zero gravity and artificial gravity (spinning) orbital conditions. Closed loop controlling dynamics for both orientation control of the arrays and attitude control of the space station are provided in the simulation by various generic types of controlling systems. The capability of the simulation as a design tool is demonstrated by utilizing typical space station and solar array structural representations and a specific structural perturbing force. Response and interaction load solutions are presented for this structural configuration and indicate the importance of using an integrated type analysis for the predictions of structural interactions.

Heinrichs, J. A.↗

Effects of Greenhouse Gas Increase and Stratospheric Ozone Depletion on Stratospheric Mean Age of Air in 1960-2010

The relative impacts of greenhouse gas (GHG) increase and stratospheric ozone depletion on stratospheric mean age of air in the 1960-2010 period are quantified using the Goddard Earth Observing System Chemistry-Climate Model. The experiment compares controlled simulations using a coupled atmosphere-ocean version of the Goddard Earth Observing System Chemistry-Climate Model, in which either GHGs or ozone depleting substances, or both factors evolve over time. The model results show that GHGs and ozone-depleting substances have about equal contributions to the simulated mean age decrease, but GHG increases account for about two thirds of the enhanced strength of the lower stratospheric residual circulation. It is also found that both the acceleration of the diabatic circulation and the decrease of the mean age difference between downwelling and upwelling regions are mainly caused by GHG forcing. The results show that ozone depletion causes an increase in the mean age of air in the Antarctic summer lower stratosphere through two processes: (1) a seasonal delay in the Antarctic polar vortex breakup that inhibits young midlatitude air from mixing with the older air inside the vortex, and (2) enhanced Antarctic downwelling that brings older air from middle and upper stratosphere into the lower stratosphere.

stratospheric ozone depletion↗