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At least 829 records · Page 46

From powerhouse to processing plant: conserved roles of mitochondrial outer membrane proteins in tRNA splicing

The mitochondrial cytoplasmic surface serves as a processing site for numerous RNAs from budding yeast to metazoans. We report that budding yeast mitochondrial outer membrane (MOM) proteins that are subunits of the translocase of the outer mitochondrial membrane (Tom70 and Tom 22) and sorting and assembly machinery (Sam37) are required for efficient pretransfer RNA (pre-tRNA) splicing. Defective pre-tRNA splicing in MOM mutants is due not to loss of respiratory metabolism but instead inefficient targeting/tethering of tRNA splicing endonuclease (SEN) subunits to mitochondria. Schizosaccharomyces pombe SEN subunits also localize to mitochondria, and Tom70 is required for this localization and pre-tRNA splicing. Thus, the role of MOM protein in targeting/tethering SEN subunits to mitochondria has been conserved for >500 million years.

59 BASIC BIOLOGICAL SCIENCES↗

Off forward non- s -channel helicity conserving contributions to exclusive vector quarkonium production from the spin dependent BFKL Pomeron

A novel contribution to off forward, exclusive vector quarkonium production, γ(*)+p → V+p, at high energy is derived which corresponds to a t-channel exchange of a Balitsky-Fadin-Kuraev-Lipatov (BFKL) hard Pomeron, with a helicity flip of the proton. This “spin-dependent BFKL Pomeron” is required in a consistent expansion in powers of the momentum transfer t ≈−Δ$^{2}_{⊥}$ beyond first order. The spin-dependent Pomeron violates s-channel helicity conservation at O(Δ$^{2}_{⊥}$), and beyond. Expanding to leading twist only, it corresponds to generalized parton distributions E g (x,t) for vanishing skewness. We derive explicit expressions for the eikonal BFKL amplitudes, to all orders in dipole size times momentum transfer, for all helicity configurations of the particles in the initial and final states. We also provide numerical estimates of the helicity flip two gluon exchange amplitude at moderate x from a light cone quark model of the proton. The spin dependent BFKL Pomeron could, in principle, be discovered via double spin asymmetries in e+p → e+p+J/ψ with a transversely polarized proton and longitudinally polarized electron in the initial state.

Deep inelastic scattering↗

Kinetically constrained freezing transition in a dipole-conserving system

Here, we study a stochastic lattice gas of particles in one dimension with strictly finite-range interactions that respect the fractonlike conservation laws of total charge and dipole moment. As the charge density is varied, the connectivity of the system's charge configurations under the dynamics changes qualitatively. We find two distinct phases: Near half filling the system thermalizes subdiffusively, with almost all configurations belonging to a single dynamically connected sector. As the charge density is tuned away from half filling there is a phase transition to a frozen phase, where locally active finite bubbles cannot exchange particles and the system fails to thermalize. The two phases exemplify what has recently been referred to as weak and strong Hilbert space fragmentation, respectively. We study the static and dynamic scaling properties of this weak-to-strong fragmentation phase transition in a kinetically constrained classical Markov circuit model, obtaining some conjectured exact critical exponents.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Energy and momentum conservation in spin transfer

We utilize simulations of spin-polarized electron scattering by a chain of localized quantum spins to show that energy and linear momentum conservation laws impose strong constraints on the properties of magnetic excitations induced by spin transfer. In turn, orbital and spin dynamics of conduction electrons depends on the dynamical characteristics of the local spins. Furthermore, our results suggest the possibility to achieve precise control of spin-transfer-driven magnetization dynamics by tailoring the spectral characteristics of the magnetic systems and of the driving electrons.

36 MATERIALS SCIENCE↗

Reaction-diffusive dynamics of number-conserving dissipative quantum state preparation

The use of dissipation for the controlled creation of nontrivial quantum many-body correlated states is of much fundamental and practical interest. What is the result of imposing number conservation, which, in closed system, gives rise to diffusive spreading? For this work, we investigate this question for a paradigmatic model of a two-band system, with dissipative dynamics aiming to empty one band and to populate the other, which had been introduced before for the dissipative stabilization of topological states. Going beyond the mean-field treatment of the dissipative dynamics, we demonstrate the emergence of a diffusive regime for the particle and hole density modes at intermediate length- and timescales, which, interestingly, can only be excited in nonlinear response to external fields. We also identify processes that limit the diffusive behavior of this mode at the longest length- and timescales. Strikingly, we find that these processes lead to a reaction-diffusion dynamics governed by the Fisher-Kolmogorov-Petrovsky-Piskunov equation, making the designed dark state unstable towards a state with a finite particle and hole density.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Role of baryon number conservation in measurements of fluctuations

Here, I discuss the role and impact of net-baryon number conservation in measurements of net-proton fluctuations in heavy-ion collisions. I show that the magnitude of the fluctuations is entirely determined by the strength of two particle correlations. At LHC and top RHIC energy, this implies the fluctuations are proportional to the integral of the balance function (BF), B pp¯ of protons and antiprotons, while in the context of the RHIC beam energy scan (BES), one must also account for correlations of stopped protons. The integral of B pp¯ measured in a 4π detector depends on the relative cross sections of processes yielding pp¯ and those balancing the proton baryon number via the production of other antibaryons. The accepted integral of B pp¯ further depends on the shape and width of the BF relative to the width of the acceptance. The magnitude of the measured second-order cumulant of net-proton fluctuations thus has much less to do with QCD susceptibilities than with the creation/transport of baryons and antibaryons in heavy-ion collisions, and most particularly the impact of radial flow on the width of the BF. I thus advocate that net-proton fluctuations should be studied by means of differential BF measurements rather than with integral correlators. I also derive an expression of net-baryon fluctuations in terms of integrals of balance functions of identified baryon pairs and argue that measurements of such balance functions would enable a better understanding of the collision system expansion dynamics, the hadronization chemistry, and an experimental assessment of the strength of net-baryon fluctuations.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Correlations of conserved quantities at finite baryon density

Correlations involving the seven conserved quantities, namely energy, baryon number, electric charge, strangeness, and the three components of momentum, give rise to correlations in heavy-ion collisions. Through the utilization of a simple one-dimensional hydrodynamic model, we calculate the evolution of the entire 7×7 matrix of correlations as a function of relative spatial rapidity. This comprehensive analysis accounts for finite baryon density, which results in off-diagonal correlations between the charge-related quantities and the energy-momentum quantities. These correlations in coordinate space are subsequently transformed into correlations in momentum space using statistical weighting. As a result, the entire matrix of correlations is revealed to be highly sensitive to the equation of state, viscosity, and diffusivity.

Equations of state of nuclear matter↗

Constraining the hadronic spectrum and repulsive interactions in a hadron resonance gas via fluctuations of conserved charges

We simultaneously incorporate two common extensions of the hadron resonance gas model, namely the addition of extra, unconfirmed resonances to the particle list and the excluded volume repulsive interactions. We emphasize the complementary nature of these two extensions and identify combinations of conserved charge susceptibilities that allow to constrain them separately. In particular, ratios of second-order susceptibilities like $\chi_{11}^{BQ}/\chi_2^B$ and $\chi_{11}^{BS}/\chi_2^B$ are sensitive only to the baryon spectrum, while fourth-to-second order ratios like $\chi_4^B/\chi_2^B$, $\chi_{31}^{BS}/\chi_{11}^{BS}$, or $\chi_{31}^{BQ}/\chi_{11}^{BQ}$ are mainly determined by repulsive interactions. Analysis of the available lattice results suggests the presence of both the extra states in the baryon-strangeness sector and the repulsive baryonic interaction, with indications that hyperons have a smaller repulsive core than non-strange baryons. Furthermore, the modified hadron resonance gas model presented here significantly improves the description of lattice QCD susceptibilities at chemical freeze-out and can be used for the analysis of event-by-event fluctuations in heavy-ion collisions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Energy conservation and the chiral magnetic effect

We analyze the chiral magnetic effect in a homogeneous neutral plasma from the point of view of energy conservation, and construct an effective potential for the growth of maximally helical perturbations of the electromagnetic field. We show that a negative curvature at the origin of the potential, indicating instability of the plasma, is induced by a chiral asymmetry in electron Fermi energy, as opposed to number density, while the potential grows at large field value. It follows that the ground state for a plasma has zero magnetic helicity; a nonzero electron mass will allow an excited state of a plasma with nonzero helicity to relax to that ground state quickly. We conclude that a chiral plasma instability triggered by weak interactions is not a viable mechanism for explaining magnetic fields in stars except possibly when dynamics drives the system far from equilibrium.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Simulating pitch angle scattering using an explicitly solvable energy-conserving algorithm

Particle distribution functions evolving under the Lorentz operator can be simulated with the Langevin equation for pitch angle scattering. This approach is frequently used in particle based Monte-Carlo simulations of plasma collisions, among others. However, most numerical treatments do not guarantee energy conservation, which may lead to unphysical artifacts such as numerical heating and spectra distortions. In this paper, we present a novel structure-preserving numerical algorithm for the Langevin equation for pitch angle scattering. Similar to the well-known Boris algorithm, the proposed numerical scheme takes advantage of the structure-preserving properties of the Cayley transform when calculating the velocity-space rotations. The resulting algorithm is explicitly solvable, while preserving the norm of velocities down to machine precision. We demonstrate that the method has the same order of numerical convergence as the traditional stochastic Euler-Maruyama method. The numerical scheme is benchmarked by simulating the pitch angle scattering of a particle beam, and comparing with the analytical solution. Benchmark results show excellent agreement with theoretical predictions, showcasing the remarkable long time accuracy of the proposed algorithm.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Spin Polarizations in a Covariant Angular-Momentum-Conserved Chiral Transport Model

Using a covariant and angular-momentum-conserved chiral transport model, which takes into account the spin-orbit interactions of chiral fermions in their scatterings via the side jumps, we study the quark spin polarization in quark matter. For a system of rotating and unpolarized massless quarks in an expanding box, we find that side jumps can dynamically polarize the quark spin and result in a final quark spin polarization consistent with that of thermally equilibrated massless quarks in a self-consistent vorticity field. Further, for the quark matter produced in noncentral relativistic heavy ion collisions, we find that in the medium rest frame both the quark local spin polarizations in the direction perpendicular to the reaction plane and along the longitudinal beam direction show an azimuthal angle dependence in the transverse plane similar to those observed in experiments for the Lambda hyperon.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Charge Conservation beyond Uniformity: Spatially Inhomogeneous Electromagnetic Response in Periodic Solids

Nonlinear electromagnetic response functions have reemerged as a crucial tool for studying quantum materials, due to recently appreciated connections between optical response functions, quantum geometry, and band topology. Most attention has been paid to responses to spatially uniform electric fields, relevant to low-energy optical experiments in conventional solid state materials. However, magnetic and magnetoelectric phenomena are naturally connected by responses to spatially varying electric fields due to Maxwell’s equations. Furthermore, in the emerging field of moiré materials, characteristic lattice scales are much longer, allowing spatial variation of optical electric fields to potentially have a measurable effect in experiments. In order to address these issues, we develop a formalism for computing linear and nonlinear responses to spatially inhomogeneous electromagnetic fields. Starting with the continuity equation, we derive an expression for the second-quantized current operator that is manifestly conserved and model independent. Crucially, our formalism makes no assumptions on the form of the microscopic Hamiltonian and so is applicable to model Hamiltonians derived from tight-binding or calculations. We then develop a diagrammatic Kubo formalism for computing the wave vector dependence of linear and nonlinear conductivities, using Ward identities to fix the value of the diamagnetic current order by order in the vector potential. We apply our formula to compute the magnitude of the Kerr effect at oblique incidence for a model of a moiré-Chern insulator and demonstrate the experimental relevance of spatially inhomogeneous fields in these systems. We further show how our formalism allows us to compute the (orbital) magnetic multipole moments and magnetic susceptibilities in insulators. Turning to nonlinear response, we use our formalism to compute the second-order transverse response to spatially varying transverse electric fields in our moiré-Chern insulator model, with an eye toward the next generation of experiments in these systems. Published by the American Physical Society 2024

Physics↗

Contrasting decays of 3-quasiparticle isomers in 173 W: A discerning test of 𝐾 conservation and 𝐾 mixing

Two isomers with K π = 19/2 + at 1876 keV with a half-life of 21(1) ns, and K π = 23/2− at 2159 keV with a half-life of 93(6) ns have been identified in 173 W, the lightest tungsten isotope to exhibit this phenomenon. An unusually high number of 13 branches have been established in the decay of the K π = 23/2 − isomer. This decay is associated with transitions involving significantly higher degrees of K forbiddenness and is in sharp contrast with the usual preferential deexcitation through branches, which are less forbidden, as is evident for the K π = 19/2 + state in 173 W. The inclusion of K-mixing effects, arising from band crossings in the sequences to which decays with larger degrees of K forbiddenness are observed, can qualitatively account for this contrasting behavior. These results provide a striking illustration of the competition between K conservation and K mixing in the decay of such isomers.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Conservation of the structure and function of bacterial tryptophan synthases

Tryptophan biosynthesis is one of the most characterized processes in bacteria, in which the enzymes from Salmonella typhimurium and Escherichia coli serve as model systems. Tryptophan synthase (TrpAB) catalyzes the final two steps of tryptophan biosynthesis in plants, fungi and bacteria. This pyridoxal 5'-phosphate (PLP)-dependent enzyme consists of two protein chains, α (TrpA) and β (TrpB), functioning as a linear αββα heterotetrameric complex containing two TrpAB units. The reaction has a complicated, multistep mechanism resulting in the β-replacement of the hydroxyl group of L-serine with an indole moiety. Recent studies have shown that functional TrpAB is required for the survival of pathogenic bacteria in macrophages and for evading host defense. Therefore, TrpAB is a promising target for drug discovery, as its orthologs include enzymes from the important human pathogens Streptococcus pneumoniae , Legionella pneumophila and Francisella tularensis , the causative agents of pneumonia, legionnaires' disease and tularemia, respectively. However, specific biochemical and structural properties of the TrpABs from these organisms have not been investigated. To fill the important phylogenetic gaps in the understanding of TrpABs and to uncover unique features of TrpAB orthologs to spearhead future drug-discovery efforts, the TrpABs from L. pneumophila , F. tularensis and S. pneumoniae have been characterized. In addition to kinetic properties and inhibitor-sensitivity data, structural information gathered using X-ray crystallography is presented. The enzymes show remarkable structural conservation, but at the same time display local differences in both their catalytic and allosteric sites that may be responsible for the observed differences in catalysis and inhibitor binding. This functional dissimilarity may be exploited in the design of species-specific enzyme inhibitors.

59 BASIC BIOLOGICAL SCIENCES↗

Learning with Adaptive Conservativeness for Distributionally Robust Optimization: Incentive Design for Voltage Regulation

Information asymmetry between the Distribution System Operator (DSO) and Distributed Energy Resource Aggregators (DERAs) obstructs designing effective incentives for voltage regulation. To capture this effect, we employ a Stackelberg game-theoretic framework, where the DSO seeks to overcome the information asymmetry and refine its incentive strategies by learning from DERA behavior over multiple iterations. We introduce a model-based online learning algorithm for the DSO, aimed at inferring the relationship between incentives and DERA responses. Given the uncertain nature of these responses, we also propose a distributionally robust incentive design model to control the probability of voltage regulation failure and then reformulate it into a convex problem. This model allows the DSO to periodically revise distribution assumptions on uncertain parameters in the decision model of the DERA. Finally, we present a gradient-based method that permits the DSO to adaptively modify its conservativeness level, measured by the size of a Wasserstein metric-based ambiguity set, according to historical voltage regulation performance. The effectiveness of our proposed method is demonstrated through numerical experiments.

adaptation models↗

Reducing Conservativeness of Polytopic Linear-Parameter-Varying Robust Vehicle Sideslip Angle Observer Through Minimum-Area Convex Quadrilateral Design

The polytopic linear-parameter-varying (LPV) method has become increasingly popular for designing intelligent control and estimation systems for ground vehicles, particularly for the vehicle sideslip angle observer. In vehicle lateral dynamics, the vehicle longitudinal velocity-induced nonlinearities are conventionally outer-approximated with polytopes such as rectangles or triangles to obtain a polytopic LPV system. Yet, such polytopic approximations tend to be conservative and may lead to inadequate observer performance. To address this issue, a minimum-area convex quadrilateral construction is proposed in this paper to reduce design conservatism. The suggested design is demonstrated through the synthesis of an LPV H ∞ robust vehicle sideslip angle observer. Furthermore, a dSPACE-ASM simulation study is conducted to demonstrate the effectiveness and the advantage of the proposed polytopic construction over a baseline approach.

Zhou, Xingyu↗

Logical and Physical Reversibility of Conservative Skyrmion Logic

Magnetic skyrmions are nanoscale whirls of magnetism that can be propagated with electrical currents. The repulsion between skyrmions inspires their use for reversible computing based on the elastic billiard ball collisions proposed for conservative logic in 1982. In this letter, we evaluate the logical and physical reversibility of this skyrmion logic paradigm, as well as the limitations that must be addressed before dissipation-free computation can be realized.

42 ENGINEERING↗

Conservation Voltage Reduction with Distributed Energy Resource Management System, Grid-Edge, and Legacy Devices

Distribution utilities use conservation voltage reduction (CVR) to obtain energy savings and lower peak demand by reducing bus voltages. Traditionally, the CVR is accomplished by controlling the legacy assets such as load tap changers, voltage regulators, and capacitor banks. The deployment of the advanced distribution management system (ADMS) and distributed energy resource management system (DERMS) enables the integration of distributed energy resources into the distribution networks and provide the grid services including CVR. This paper studies the coordinated operation of an ADMS and a DERMS in achieving CVR and voltage regulation. A commercial ADMS uses legacy devices and Edge-of-Network Grid Optimization (ENGO) devices to obtain energy savings through CVR. A prototype DERMS dispatches the photovoltaic smart inverters based on real-time optimal power low to ensure voltage regulation across the feeder. The results show that the coordinated operation of ADMS and DERMS is effective in achieving CVR and voltage regulation. Specifically, energy savings of up to 4.7% are observed in the real utility distribution system used in this study.

advanced distribution management system↗