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All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

The Sufficient Component Cause Model Explaining Low-Dose Radiobiology through an Epidemiologic Lens

One of the major challenges in understanding space radiation-induced carcinogenesis is the uncertainty from translating radiobiological research in cellular and animal models to humans, especially at doses below 100 mSv. Biological studies have shown a host of potential outcomes at low doses in animal and cellular models. The existence of non-targeted effects as bystander and abscopal effects is well-documented from clinical research and basic science1,2,3. While some studies have shown increased effects at low doses, others have shown evidence of hormetic bystander effects, where radiation exposure may be beneficial4,5,6. Despite these varied and diverse findings, epidemiologic studies largely support the linear-no threshold (LNT) assumption used by radiation protection guidance7,8. Translational animal-to-human models have predominantly considered ratio values such as the relative biological effectiveness (RBE) and dose and dose-rate effectiveness factor (DDREF) that rely on the assumption of LNT rather than implementing specific dose-response shapes in the low-dose region, and translational cell-to-human models are uncommon. The sufficient component cause model presents an opportunity to examine biological findings at low doses from an epidemiological lens9. In this model, exposures “sufficient” to cause an outcome of interest are presented in pie charts, such that when all slices of a pie chart are fulfilled, the outcome will occur. Multiple pie charts may exist for a single outcome, illustrating individual differences9. In 1988,Greenland and Poole adapted the sufficient component cause model to incorporate interaction with other exposures (such as genetics or lifestyle factors)10. They show that a range of biological processes are possible in a population, but that an epidemiologic study will only reveal the mean outcome from the population at large10,11. Using this construct, the multiple outcomes presented in radiobiological models to date can be explained in the context of epidemiologic studies. This presentation aims to demonstrate a causal framework that can integrate radiobiological and epidemiological models to date. It is intended as a conversation starter to spur future research.

C M Milder↗
NASA NTRSDate not supplied

The Potential Outcome Model: Explaining Low-Dose Radiobiology through an Epidemiologic Lens

One of the major challenges in understanding space radiation-induced carcinogenesis is the uncertainty from translating radiobiological research in cellular and animal models to humans, especially at doses below 100 mSv. Biological studies have shown a host of potential outcomes at lowdoses in animal and cellular models. The existence of non-targeted effects as bystander and abscopal effects is well-documented from clinical research and basic science1,2,3. While some studies have shown increased effects at low doses, others have shown evidence of hormetic bystander effects, where radiation exposure may be beneficial4,5,6. Despite these varied and diverse findings, epidemiologic studies largely support the linear-no threshold (LNT) assumption used by radiation protection guidance7,8. Translational animal-to-human models have predominantly considered ratio values such as the relative biological effectiveness (RBE) and dose and dose-rate effectiveness factor (DDREF) that rely on the assumption of LNT rather than implementing specific dose-response shapes in the low-dose region, and translational cell-to-human models are uncommon. The sufficient component cause model presents an opportunity to examine biological findings at low doses from an epidemiological lens9. In this model, exposures “sufficient” to cause an outcome of interest are presented in pie charts, such that when all slices of a pie chart are fulfilled, the outcome will occur. Multiple pie charts may exist for a single outcome, illustrating individual differences9. In 1988,Greenland and Poole adapted the sufficient component cause model to incorporate interaction with other exposures (such as genetics or lifestyle factors)10. They show that a range of biological processes are possible in a population, but that an epidemiologic study will only reveal the mean outcome from the population at large10,11. Using this construct, the multiple outcomes presented in radiobiological models to date can be explained in the context of epidemiologic studies. This presentation aims to demonstrate a causal framework that can integrate radiobiological and epidemiological models to date. It is intended as a conversation starter to spur future research.

C M Milder↗
NASA NTRS1984

Mathematical modeling of fluid-electrolyte alterations during weightlessness

Fluid electrolyte metabolism and renal endocrine control as it pertains to adaptation to weightlessness were studied. The mathematical models that have been particularly useful are discussed. However, the focus of the report is on the physiological meaning of the computer studies. A discussion of the major ground based analogs of weightlessness are included; for example, head down tilt, water immersion, and bed rest, and a comparison of findings. Several important zero g phenomena are described, including acute fluid volume regulation, blood volume regulation, circulatory changes, longer term fluid electrolyte adaptations, hormonal regulation, and body composition changes. Hypotheses are offered to explain the major findings in each area and these are integrated into a larger hypothesis of space flight adaptation. A conceptual foundation for fluid electrolyte metabolism, blood volume regulation, and cardiovascular regulation is reported.

Leonard, J. I.↗
NASA NTRS1993

Alterations in skeletal muscle related to impaired physical mobility: an empirical model

The objective of this investigation was to study impaired physical mobility and the resulting skeletal muscle atrophy. An animal model was used to study morphological adaptations of the soleus and plantaris muscles to decreased loading induced by hindlimb suspension of an adult rat for 7, 14, and 28 consecutive days. Alterations in weight, skeletal muscle growth, and changes in fiber type composition were studied in synergistic plantar flexors of the rat hindlimb. Body weight and the soleus muscle mass to body mass ratio demonstrated significant progressive atrophy over th 28-day experimental period with the most significant changes occurring in the first 7 days of hindlimb suspension. Hindlimb suspension produced atrophy of Type I and Type IIa muscle fibers as demonstrated by significant decreases in fiber cross-sectional area (micron 2). These latter changes account for the loss of contractile force production reported in the rat following hindlimb unloading. When compared to traditional models of hindlimb suspension and immobilization, the ISC model produces a less severe atrophy while maintaining animal mobility and health. We conclude that it is the preferred animal model to address nursing questions of impaired physical mobility.

Non-NASA Center↗
NASA NTRS2018

GMI-IPS: Python Processing Software for Aircraft Campaigns

NASA's Atmospheric Tomography Mission (ATom) seeks to understand the impact of anthropogenic air pollution on gases in the Earth's atmosphere. Four flight campaigns are being deployed on a seasonal basis to establish a continuous global-scale data set intended to improve the representation of chemically reactive gases in global atmospheric chemistry models. The Global Modeling Initiative (GMI), is creating chemical transport simulations on a global scale for each of the ATom flight campaigns. To meet the computational demands required to translate the GMI simulation data to grids associated with the flights from the ATom campaigns, the GMI ICARTT Processing Software (GMI-IPS) has been developed and is providing key functionality for data processing and analysis in this ongoing effort. The GMI-IPS is written in Python and provides computational kernels for data interpolation and visualization tasks on GMI simulation data. A key feature of the GMI-IPS, is its ability to read ICARTT files, a text-based file format for airborne instrument data, and extract the required flight information that defines regional and temporal grid parameters associated with an ATom flight. Perhaps most importantly, the GMI-IPS creates ICARTT files containing GMI simulated data, which are used in collaboration with ATom instrument teams and other modeling groups. The initial main task of the GMI-IPS is to interpolate GMI model data to the finer temporal resolution (1-10 seconds) of a given flight. The model data includes basic fields such as temperature and pressure, but the main focus of this effort is to provide species concentrations of chemical gases for ATom flights. The software, which uses parallel computation techniques for data intensive tasks, linearly interpolates each of the model fields to the time resolution of the flight. The temporally interpolated data is then saved to disk, and is used to create additional derived quantities. In order to translate the GMI model data to the spatial grid of the flight path as defined by the pressure, latitude, and longitude points at each flight time record, a weighted average is then calculated from the nearest neighbors in two dimensions (latitude, longitude). Using SciPya's Regular Grid Interpolator, interpolation functions are generated for the GMI model grid and the calculated weighted averages. The flight path points are then extracted from the ATom ICARTT instrument file, and are sent to the multi-dimensional interpolating functions to generate GMI field quantities along the spatial path of the flight. The interpolated field quantities are then written to a ICARTT data file, which is stored for further manipulation. The GMI-IPS is aware of a generic ATom ICARTT header format, containing basic information for all flight campaigns. The GMI-IPS includes logic to edit metadata for the derived field quantities, as well as modify the generic header data such as processing dates and associated instrument files. The ICARTT interpolated data is then appended to the modified header data, and the ICARTT processing is complete for the given flight and ready for collaboration. The output ICARTT data adheres to the ICARTT file format standards V1.1. The visualization component of the GMI-IPS uses Matplotlib extensively and has several functions ranging in complexity. First, it creates a model background curtain for the flight (time versus model eta levels) with the interpolated flight data superimposed on the curtain. Secondly, it creates a time-series plot of the interpolated flight data. Lastly, the visualization component creates averaged 2D model slices (longitude versus latitude) with overlaid flight track circles at key pressure levels. The GMI-IPS consists of a handful of classes and supporting functionality that have been generalized to be compatible with any ICARTT file that adheres to the base class definition. The base class represents a generic ICARTT entry, only defining a single time entry and 3D spatial positioning parameters. Other classes inherit from this base class; several classes for input ICARTT instrument files, which contain the necessary flight positioning information as a basis for data processing, as well as other classes for output ICARTT files, which contain the interpolated model data. Utility classes provide functionality for routine procedures such as: comparing field names among ICARTT files, reading ICARTT entries from a data file and storing them in data structures, and returning a reduced spatial grid based on a collection of ICARTT entries. Although the GMI-IPS is compatible with GMI model data, it can be adapted with reasonable effort for any simulation that creates Hierarchical Data Format (HDF) files. The same can be said of its adaptability to ICARTT files outside of the context of the ATom mission. The GMI-IPS contains just under 30,000 lines of code, eight classes, and a dozen drivers and utility programs. It is maintained with GIT source code management and has been used to deliver processed GMI model data for the ATom campaigns that have taken place to date.

Damon, M. R.↗
NASA NTRS2020

Sketch-to-Solution: A Case Study in RCS Aerodynamic Interaction

Thanks to recent advances in the fields of anisotropic grid adaptation, error estimation, and geometry modeling, a sketch-to-solution work flow is now possible for viscous computational fluid dynamic (CFD) simulations. With this workflow, a CFD application engineer provides geometry, boundary conditions, and flow parameters; and the sketch-to-solution process yields a CFD simulation through automatic, error-based, grid adaptation. To explore the benefits of this nascent capability, a conventional manual grid generation work flow is compared to this new automatic grid generation work flow for a given engineering question: What are the aerodynamic interactions caused by the reaction control system (RCS) on an entry vehicle? This case study indicates that while the automatic grid generation sketch-to- solution process is not yet mature, it is preferred over a manual grid generation work flow because it greatly reduces manual labor, eliminates many opportunities for human error, and provides grid sensitivity information.

Bill Kleb↗
NASA NTRS1985

Modeling the internal combustion engine

A flexible and computationally economical model of the internal combustion engine was developed for use on large digital computer systems. It is based on a system of ordinary differential equations for cylinder-averaged properties. The computer program is capable of multicycle calculations, with some parameters varying from cycle to cycle, and has restart capabilities. It can accommodate a broad spectrum of reactants, permits changes in physical properties, and offers a wide selection of alternative modeling functions without any reprogramming. It readily adapts to the amount of information available in a particular case because the model is in fact a hierarchy of five models. The models range from a simple model requiring only thermodynamic properties to a complex model demanding full combustion kinetics, transport properties, and poppet valve flow characteristics. Among its many features the model includes heat transfer, valve timing, supercharging, motoring, finite burning rates, cycle-to-cycle variations in air-fuel ratio, humid air, residual and recirculated exhaust gas, and full combustion kinetics.

Zeleznik, F. J.↗
NASA NTRS2014

How to Develop and Interpret a Credibility Assessment of Numerical Models for Human Research: NASA-STD-7009 Demystified

In the wake of the Columbia accident, the NASA-STD-7009 [1] credibility assessment was developed as a unifying platform to describe model credibility and the uncertainties in its modeling predictions. This standard is now being adapted by NASAs Human Research Program to cover a wide range of numerical models for human research. When used properly, the standard can improve the process of code development by encouraging the use of best practices. It can also give management more insight in making informed decisions through a better understanding of the models capabilities and limitations.To a newcomer, the abstractions presented in NASA-STD-7009 and the sheer volume of information that must be absorbed can be overwhelming. This talk is aimed at describing the credibility assessment, which is the heart of the standard, in plain terms. It will outline how to develop a credibility assessment under the standard. It will also show how to quickly interpret the graphs and tables that result from the assessment and how to drill down from the top-level view to the foundation of the assessment. Finally, it will highlight some of the resources that are available for further study.

numerical analysis↗
NASA NTRS2015

Application of the Refined Zigzag Theory to the Modeling of Delaminations in Laminated Composites

The Refined Zigzag Theory is applied to the modeling of delaminations in laminated composites. The commonly used cohesive zone approach is adapted for use within a continuum mechanics model, and then used to predict the onset and propagation of delamination in five cross-ply composite beams. The resin-rich area between individual composite plies is modeled explicitly using thin, discrete layers with isotropic material properties. A damage model is applied to these resin-rich layers to enable tracking of delamination propagation. The displacement jump across the damaged interfacial resin layer is captured using the zigzag function of the Refined Zigzag Theory. The overall model predicts the initiation of delamination to within 8% compared to experimental results and the load drop after propagation is represented accurately.

Groh, Rainer M. J.↗
NASA NTRS1994

Active Members to Establish On-Orbit Modal Data for Modal Correlation

The paper presents an approach to experimentally determine the modal sensitivity derivitives with respect to physical parameters of a structure in space or on the ground. The information experimentally validates the Jacobian used to update the analytical model to correlate with the experimental modal data. The approach is applicable to Adaptive Structures and utilizes active members. For verification of the approach, numerical simulations of a 4.5 meter diameter truss structure and experimental verification plan and progress are presented.

space structures modal analysis dynamic models ada↗
NASA NTRS2009

Developing Large-Scale Bayesian Networks by Composition: Fault Diagnosis of Electrical Power Systems in Aircraft and Spacecraft

This CD contains files that support the talk (see CASI ID 20100021404). There are 24 models that relate to the ADAPT system and 1 Excel worksheet. In the paper an investigation into the use of Bayesian networks to construct large-scale diagnostic systems is described. The high-level specifications, Bayesian networks, clique trees, and arithmetic circuits representing 24 different electrical power systems are described in the talk. The data in the CD are the models of the 24 different power systems.

Mengshoel, Ole Jakob↗
NASA NTRS1985

New Directions in Asymptotically Stable Finite-dimensional Adaptive Control of Linear Distributed Parameter Systems

Distributed Parameter Systems (DPS), such as systems described by partial differential equations, require infinite-dimensional state space descriptions to correctly model their dynamical behavior. However, any adaptive control algorithm must be finite-dimensional in order to be implemented via on-line digital computers. Finite-dimensional adaptive control of linear DPS requires stability analysis of nonlinear, time-varying, infinite-dimensional systems. The structure of nonadaptive finite-dimensional control of linear DPS is summarized as it relates to the existence of limiting systems for adaptive control. Two candidate schemes for finite-dimensional adaptive control of DPS are described and critical issues in infinite-dimensional stability analysis are discussed, in particular, the invariance principle, center manifold theory, and relationships between input-output and internal stability.

Balas, M. J.↗
NASA NTRSDate not supplied

fmdtools Tutorial: Intro to Resilience Modelling, Simulation, and Visualization in Python With fmdtools

This workshop will cover the basics of using the fmdtools package for the simulation of hazardous scenarios for resilience simulation. The fmdtools simulation package is an open-source python toolkit for simulating the dynamic response of a system to internal and externally-driven hazardous scenarios, including faults and environmental conditions, that can be used to analyze the risks related to these hazards. Prior to the development of fmdtools, researchers had to either adapt an (often limited) propriety toolkit or develop their own design/simulation/analysis codes to develop their models of hazardous events, a significant technical burden to both (1) leveraging resilience modeling methodologies and (2) extending these methodologies with their own contributions. The fmdtools package provides a number of model constructs and simulation and analysis methods to enable the designer to focus to solely on their modeling case-study while still enabling a significant degree of model expressiveness and adaptability via Python-based model definition. This tutorial will present the setup of fmdtools and a high-level overview of its use, as well as some simple examples for understanding how to leverage its modelling, simulation, and analysis capabilities. Familiarity with jupyter notebook and basic python will be assumed.

Daniel Hulse↗
NASA NTRS1994

Near-surface ice on Mercury and the Moon: A topographic thermal model

A thermal model that can be easily adapted to craters of arbitrary shape is developed and applied to high-latitude impact craters on Mercury and the Moon, Chao Meng Fu crater at -87.5 deg L on Mercury, an unnamed bowl-shaped crater at 86.7 deg L on Mercury, and Peary crater at 88.6 deg L on the Moon. For an assumed input topography and grid of surface elements, the model computes for each element the irradiation from direct insolation and reflected and emitted radiation from other elements, taking into account shadowing by walls of the crater, partial obscuration of the solar disk near the poles and the diurnal, orbital, and seasonal cycles. Temperatures are computed over the surface grid as functions of depth and time from the surface to a specified depth and over the pertinent astronomical cycles, including the effects of direct and indirect surface irradiation, infrared radiation, heat conduction, and interior heating. Vapor fluxes and ice recession times are computed as functions of ice depth over the surface grid. Temperatures profiles, vapor fluxes, and ice recession times were computed for flat surfaces not associated with craters near the poles of Mercury and the Moon. It was found that water ice could have existed throughout geologic time within the maximum radar detection depth of recent observation of Mercury (J. K. Harmon and M. A. Slade, 1992, Science 258, 640-643) poleward of approximately 87 - 88 deg L on Mercury and poleward of approximately 73 deg L on the Moon. For Chao Meng Fu crater it was found that approximately 40% of the crater floor is permanently shadowed from direct solar insolation, while the remainder of the crater floor is periodically illuminated by a partially obscured Sun. Temperatures at the upper levels of the south wall can slightly exceed 550 K. Surface temperatures in the permanently shadowed region of the crater floor are under approximately 130 K, which could have allowed water ice to exist throughout geologic time within the radar detection depth of recent observation of Mercury. For small bowl-shaped crater on Mercury, it was found that most of the crater is permanently shadowed from direct solar radiation, except for a narrow semicircular band bordering the north rim. However, temperatures in the permanently shadowed region periodically reach a maximum near approximately 315 K due to efficient heating of the small crater by thermal emission and reflection from the small sunlit region, which periodically reaches temperatures exceeding 630 K. Water ice could not have existed throughout geologic time anywhere in this crater within the radar detection depth. For Peary crater on the Moon, the entire crater floor is permanently shadowed from direct solar insolation with maximum temperature under 120 K. The upper level of the north wall periodically reaches a maximum temperature near 310 K. The low temperatures on the crater floor would have allowed water ice to exist near the surface throughout geologic time, provided that the Moon's obliquity was always as low as it is at present.

Salvail, James R.↗
NASA NTRS1997

Analyzing Tabular and State-Transition Requirements Specifications in PVS

We describe PVS's capabilities for representing tabular specifications of the kind advocated by Parnas and others, and show how PVS's Type Correctness Conditions (TCCs) are used to ensure certain well-formedness properties. We then show how these and other capabilities of PVS can be used to represent the AND/OR tables of Leveson and the Decision Tables of Sherry, and we demonstrate how PVS's TCCs can expose and help isolate errors in the latter. We extend this approach to represent the mode transition tables of the Software Cost Reduction (SCR) method in an attractive manner. We show how PVS can check these tables for well-formedness, and how PVS's model checking capabilities can be used to verify invariants and reachability properties of SCR requirements specifications, and inclusion relations between the behaviors of different specifications. These examples demonstrate how several capabilities of the PVS language and verification system can be used in combination to provide customized support for specific methodologies for documenting and analyzing requirements. Because they use only the standard capabilities of PVS, users can adapt and extend these customizations to suit their own needs. Those developing dedicated tools for individual methodologies may find these constructions in PVS helpful for prototyping purposes, or as a useful adjunct to a dedicated tool when the capabilities of a full theorem prover are required. The examples also illustrate the power and utility of an integrated general-purpose system such as PVS. For example, there was no need to adapt or extend the PVS model checker to make it work with SCR specifications described using the PVS TABLE construct: the model checker is applicable to any transition relation, independently of the PVS language constructs used in its definition.

Owre, Sam↗
NASA NTRS2019

Global Crop Production: Adaptation to Temperature Increase Is Possible by Maintaining the Current Growing Periods

Increasing temperature trends are expected to impact yields of major field crops by affecting various plant processes, such as phenology and growth. However, future projections, especially at the global scale, do not consider any agronomic adaptation in farming practices. We use an ensemble of seven Global Gridded Crop Models (GGCMs) contributing to the AgMIP-Gridded project to quantify the impacts and adaptation potential of field crops under increasing temperature. We study how uniform warming scenarios up to 6 K affect the productivity and growing period duration of five major crops. The design of the experiment aims at understanding adaptation measures targeted to temperature-driven impacts and therefore leaves out changes in any other climate variable. We find that, without adaptation the dominant effect of temperature increase is to shorten the growing period and to reduce yields and production, consistently across crops and regions. We then test the potential of two agronomic measures to contrast warming-induced yield reduction, assuming that (i) cultivars with adjusted phenology would be used to regain the reference growing period duration; (ii) rainfed systems would be converted to irrigated. Despite substantial uncertainties in model parametrization and little agreement in spatial patterns, at the global aggregation, model results are robust. We find that up to 3 K of temperature increase, production losses could be fully compensated by maintaining the original crop growing period. Irrigation would also compensate production losses, but would not reduce the temperature impacts. Across regions, the model ensemble estimates larger adaptation potentials from unchanged growing periods in continental and temperate regions, than in tropical and arid regions, where also irrigation has respectively little effects and availability.

Irrigation↗
NASA NTRS2004

Dynamical Modeling of Mars' Paleoclimate

This report summarizes work undertaken under a one-year grant from the NASA Mars Fundamental Research Program. The goal of the project was to initiate studies of the response of the Martian climate to changes in planetary obliquity and orbital elements. This work was undertaken with a three-dimensional numerical climate model based on the Geophysical Fluid Dynamics Laboratory (GFDL) Skyhi General Circulation Model (GCM). The Mars GCM code was adapted to simulate various obliquity and orbital parameter states. Using a version of the model with a basic water cycle (ice caps, vapor, and clouds), we examined changes in atmospheric water abundances and in the distribution of water ice sheets on the surface. This work resulted in a paper published in the Journal of Geophysical Research - Planets. In addition, the project saw the initial incorporation of a regolith water transport and storage scheme into the model. This scheme allows for interaction between water in the pores of the near subsurface (<3m) and the atmosphere. This work was not complete by the end of the one-year grant, but is now continuing within the auspices of a three-year grant of the same title awarded by the Mars Fundamental Research Program in late 2003.

Richardson, Mark I.↗