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NASA NTRS2019

Discovery and Vetting of Exoplanets. I. Benchmarking K2 Vetting Tools

We have adapted the algorithmic tools developed during the Kepler mission to vet the quality of transit-like signals for use on the K2 mission data. Using the four sets of publicly available light curves at MAST, we produced a uniformly vetted catalog of 772 transiting planet candidates from K2 as listed at the NASA Exoplanet Archive in the K2 Table of Candidates. Our analysis marks 676 of these as planet candidates and 96 as false positives. All confirmed planets pass our vetting tests. Sixty of our false positives are new identifications, effectively doubling the overall number of astrophysical signals mimicking planetary transits in K2 data. Most of the targets listed as false positives in our catalog show either prominent secondary eclipses, transit depths suggesting a stellar companion instead of a planet, or significant photocenter shifts during transit. We packaged our tools into the open-source, automated vetting pipeline Discovery and Vetting of Exoplanets (DAVE), designed to streamline follow-up efforts by reducing the time and resources wasted observing targets that are likely false positives. DAVE will also be a valuable tool for analyzing planet candidates from NASA's TESS mission, where several guest-investigator programs will provide independent light-curve sets—and likely many more from the community. We are currently testing DAVE on recently released TESS planet candidates and will present our results in a follow-up paper.

Kostov, Veselin B.↗

NASA NTRS2020

Automated Cardiovascular Pathology Assessment using Semantic Segmentation and Ensemble Learning

Cardiac magnetic resonance imaging provides high spatial resolution, enabling improved extraction of important functional and morphological features for cardiovascular disease staging. Segmentation of ventricular cavities and myocardium in cardiac cine sequencing provides a basis to quantify cardiac measures such as ejection fraction. A method is presented that curtails the expense and observer bias of manual cardiac evaluation by combining semantic segmentation and disease classification into a fully automatic processing pipeline. The initial processing element consists of a robust dilated convolutional neural network architecture for voxel-wise segmentation of the myocardium and ventricular cavities. The resulting comprehensive volumetric feature matrix captures diagnostic clinical procedure data and is utilized by the final processing element to model a cardiac pathology classifier. Our approach evaluated anonymized cardiac images from a training data set of 100 patients (4 pathology groups, 1 healthy group, 20 patients per group) examined at the University Hospital of Dijon. The top average Dice index scores achieved were 0.940, 0.886, 0.849 for structure segmentation of the left ventricle (LV), myocardium and right ventricle (RV) respectively. A 5-ary pathology classification accuracy of 90% was recorded on an independent test set using the trained model. Performance results demonstrate potential for advanced machine learning methods to deliver accurate, efficient and reproducible cardiac pathological assessment.

Semantic Segmentation↗

NASA NTRS2019

TESS Data Release Notes: Sectors 1 – 13, Multi-Sector Search, DR20

These Data Release Notes provide information on the processing and export of data from the Transiting Exoplanet Survey Satellite (TESS). This data release is a combined, multi-sector transit search only. The underlying data products from individual observing sectors have been previously released. The data products included in this data release are the Data Validation (DV) reports, time series, and associated xml les for the threshold crossing events (TCEs) found by searching a combined data set including data from multiple observing sectors. These data products were generated by the TESS Science Processing Operations Center (SPOC, Jenkins et al., 2016) at NASA Ames Research Center from data collected by the TESS instrument, which is managed by the TESS Payload Operations Center (POC) at Massachusetts Institute of Technology (MIT). The format and content of these data products are documented in the Science Data Products Description Document (SDPDD)1. The SPOC science algorithms are based heavily on those of the Kepler Mission science pipeline, and are described in the Kepler Data Processing Handbook (Jenkins, 2017)2. The Data Validation algorithms are documented in Twicken et al. (2018) and Li et al. (2019). The TESS Instrument Handbook (Vanderspek et al., 2018)3 contains more information about the TESS instrument design, detector layout, data properties, and mission operations. The TESS Mission is funded by NASA's Science Mission Directorate.

Burke, Christopher J.↗

NASA NTRS2017

Generating Land Surface Reflectance for the New Generation of Geostationary Satellite Sensors with the MAIAC Algorithm

The latest generation of geostationary satellite sensors, including the GOES-16/ABI and the Himawari 8/AHI, provide exciting capability to monitor land surface at very high temporal resolutions (5-15 minute intervals) and with spatial and spectral characteristics that mimic the Earth Observing System flagship MODIS. However, geostationary data feature changing sun angles at constant view geometry, which is almost reciprocal to sun-synchronous observations. Such a challenge needs to be carefully addressed before one can exploit the full potential of the new sources of data. Here we take on this challenge with Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm, recently developed for accurate and globally robust applications like the MODIS Collection 6 re-processing. MAIAC first grids the top-of- atmosphere measurements to a fixed grid so that the spectral and physical signatures of each grid cell are stacked (“remembered”) over time and used to dramatically improve cloud/shadow/snow detection, which is by far the dominant error source in the remote sensing. It also exploits the changing sun-view geometry of the geostationary sensor to characterize surface BRDF with augmented angular resolution for accurate aerosol retrievals and atmospheric correction. The high temporal resolutions of the geostationary data indeed make the BRDF retrieval much simpler and more robust as compared with sun-synchronous sensors such as MODIS. As a prototype test for the geostationary-data processing pipeline on NASA Earth Exchange (GEONEX), we apply MAIAC to process 18 months of data from Himawari 8/AHI over Australia. We generate a suite of test results, including the input TOA reflectance and the output cloud mask, aerosol optical depth (AOD), and the atmospherically-corrected surface reflectance for a variety of geographic locations, terrain, and land cover types. Comparison with MODIS data indicates a general agreement between the retrieved surface reflectance products. Furthermore, the geostationary results satisfactorily capture the movement of clouds and variations in atmospheric dust/aerosol concentrations, suggesting that high quality land surface and vegetation datasets from the advanced geostationary sensors can help complement and improve the corresponding EOS products.

geostationary satellite sensors↗

NASA NTRS2019

Benchmarking Simulations of the Compton Spectrometer and Imager with Calibrations

The Compton Spectrometer and Imager (COSI) is a balloon-borne 𝛾-ray (0.2-5 MeV) telescope designed to study astrophysical sources. COSI employs a compact Compton telescope design utilizing 12 high-purity germanium double-sided strip detectors and is inherently sensitive to polarization. In 2016, COSI was launched from Wanaka, New Zealand and completed a successful 46-day flight on NASA’s new Super Pressure Balloon. In order to perform imaging, spectral, and polarization analysis of the sources observed during the 2016 flight, we compute the detector response from well-benchmarked simulations. As required for accurate simulations of the instrument, we have built a comprehensive mass model of the instrument and developed a detailed detector effects engine which applies the intrinsic detector performance to Monte Carlo simulations. The simulated detector effects include energy, position, and timing resolution, thresholds, dead strips, charge sharing, charge loss, crosstalk, dead time, and detector trigger conditions. After including these effects, the simulations closely resemble the measurements, the standard analysis pipeline used for measurements can also be applied to the simulations, and the responses computed from the simulations are accurate. We have computed the systematic error that we must apply to measured fluxes at certain energies, which is 6.3% on a rage. Here we describe the detector effects engine and the benchmarking tests performed with calibrations.

Sleator, Clio C.↗

NASA NTRS2020

Back to the Future: Surveying the Northern Hemisphere and Reprocessing the Southern TESS Data Set

TESS launched 18 April 2018 to conduct a two-year, near all-sky survey for at least 50 small, nearby exoplanets for which masses can be ascertained and whose atmospheres can be characterized by ground- and space-based follow-on observations. TESS has completed its survey of the southern hemisphere and begun its survey of the northern hemisphere, identifying >1000 candidate exoplanets and unveiling a plethora of exciting non-exoplanet astrophysics results, such as asteroseismology, asteroids, and supernova. The TESS Science Processing Operations Center (SPOC) processes the data downlinked every two weeks to generate a range of data products hosted at the Mikulski Archive for Space Telescopes (MAST). For each sector (~1 month) of observations, the SPOC calibrates the image data for both 30-min Full Frame Images (FFIs) and up to 20,000 pre-selected 2-min target star postage stamps. Data products for the 2-min targets include simple aperture photometry and systematic error-corrected flux time series. The SPOC also conducts searches for transiting exoplanets in the 2-min data for each sector and generates Data Validation time series and associated reports for each transit-like feature identified in the search. Multi-sector searches for exoplanets are conducted periodically to discover longer period planets, including those in the James Webb Continuous Viewing Zone (CVZ), which are observed for up to one year. Starting with Sector 8, scattered light from the Earth and Moon contaminated significant portions of the data in each orbit. We have developed algorithms for automated identification of the scattered light features at the individual target level. Previously, data for all stars on a CCD affected by scattered light were manually excluded. The automated flagging will allow us to retain significantly more data for stars that are not affected by the scattered light even though it is occurring elsewhere on the CCD. We also discuss enhancements to the SPOC pipeline and the newly available FFI light curves. The TESS Mission is funded by NASA's Science Mission Directorate as an Astrophysics Explorer Mission.

Jenkins, Jon M.↗

NASA NTRS2019

The Cumulus Ecosystem: Open Source and Beyond to Foster Collaboration

NASA’s Earth Observing System Data and Information System (EOSDIS) open source Cumulus software is designed as a common set of code and services that can be used to create a pipeline to deliver and manage earth science data in the cloud. Cumulus strives to create an ecosystem on the foundation of open source that unites those with shared problems and goals by encouraging users to contribute solutions back to the platform. Large parts of ingesting and managing data are common and much of what is created can be used by others. Our goal is to maximize collaboration and code reuse while allowing users to design a custom solution that meets their needs without having to take on extraneous functionality. In this talk we will describe how the Cumulus ecosystem works beyond just open source software. We will review the technology, the successes and challenges, and the evolution and future of Cumulus as an ecosystem.

Cumulus↗

NASA NTRS2019

Citizen Science Twitter Data Management for Earth Science Applications

Social media data can provide useful real-time and historical information relating to the natural world, but managing this data poses challenges. Scientists at GES DISC are exploring the potential of Twitter data to augment precipitation data from the Global Precipitation Measurement (GPM) mission. However, the format of Twitter data is unconventional in the context of NASA data centers, resulting in frustration for scientists who need to work with the data. This study investigated procedures and standards needed to properly manage Twitter data to make them compatible with these data centers. After comparing databases, the study found that the MongoDB database was best suited for the storage of raw Twitter data due to its flexibility, ability to be accessed by multiple users, and querying functionality. The study used the Python package Zarr to transform processed Twitter data into a gridded format similar to that of satellite data. Each Tweet was mapped onto a time-space grid; each grid location contained information about Tweet attributes and precipitation. The study developed a pipeline for downloading, storing, and gridding Twitter data and transformed Twitter data into an understandable format for users of NASA satellite data.

Li, Rachel↗

NASA NTRS2019

Characterization of Subsurface Flow Dynamics for Forecasting of Solar Activity

Evolution of large-scale magnetic field structures in the solar photosphere and corona is controlled by motions beneath the visible surface of the Sun. Subsurface plasma flows play a critical role in formation and evolution of active regions and their activity. We analyze subsurface flow maps provided by the local helioseismology pipeline from the Helioseismic and Magnetic Imager (HMI) data on board the Solar Dynamics Observatory, and investigate links between flow characteristics and magnetic activity. The primary goal is to determine flow descriptors, which can improve solar activity forecasts. In particular, by employing machine learning classifiers, we test how the flow helicity and velocity shear descriptors can improve the prediction of initiation of flares and CME eruptions.

Kosovichev, Alexander↗

NASA NTRS2019

Creating Data-Driven Vector Visualizations of Satellite Orbit Tracks Using NASA GIBS and Worldview

NASA Earth Observing System (EOS) currently operates dozens of remote sensing satellites, many of which can be viewed directly in NASA’s open-source Worldview application. Much of this satellite imagery can be viewed in near-real time as it is processed and served by NASA’s Global Imagery Browse Service (GIBS). To better educate users on the time and location of imagery, GIBS serves orbit track specific layers for each satellite. Worldview has historically served these layers as raster images but recent updates have enabled the application to now serve these layers using vector tiles. With the release of Worldview v3.0, orbit track layers can be displayed using mapbox vector tiles (MVT). This visualization format allows users to not only view and change the color of orbit track layers, as they could do previously with rasters, but also inspect individual vector points and filter layers by specific parameters such as time. The data contained within a MVT is further enhanced in Worldview with the combination of a JSON description file served from GIBS used to describe the MVT data. This presentation will provide an overview of the process of consuming orbit track vector tiles and data files from GIBS using a pipeline to configure, build and ultimately display the orbit tracks in Worldview. Furthermore, the presentation aims to describe how others can leverage our open-source code to display and enhance vector layers in their own applications.

Rice, Zachary↗

NASA NTRS2020

TESS Data Release Notes: Sector 21 DR 29

These Data Release Notes provide information on the processing and export of data from the Transiting Exoplanet Survey Satellite (TESS). The data products included in this data release are full frame images (FFIs), target pixel les, light curve les, collateral pixel les, cotrending basis vectors (CBVs), and Data Validation (DV) reports, time series, and associated xml les. These data products were generated by the TESS Science Processing Operations Center (SPOC, Jenkins et al., 2016) at NASA Ames Research Center from data collected by the TESS instrument, which is managed by the TESS Payload Operations Center (POC) at Massachusetts Institute of Technology (MIT). The format and content of these data products are documented in the Science Data Products Description Document (SDPDD)1. The SPOC science algorithms are based heavily on those of the Kepler Mission science pipeline, and are described in the Kepler Data Processing Handbook (Jenkins, 2017).2 The Data Validation algorithms are documented in Twicken et al. (2018) and Li et al. (2019). The TESS Instrument Handbook (Vanderspek et al., 2018) contains more information about the TESS instrument design, detector layout, data properties, and mission operations. The TESS Mission is funded by NASA's Science Mission Directorate.

Michael M. Fausnaugh↗

NASA NTRS2019

TPSAS-NF1676L-32493-DND

The Committee on Earth Observation Satellites (CEOS) System Engineering Office (SEO) has supported the Open Data Cube (ODC) initiative to provide a data architecture solution that has value to its global users and increases the impact of EO satellite data. ODC is an open-source platform for processing satellite data. We have developed software products and tools around the core ODC that would help users perform machine learning on EO satellite data. The recent United Nations (UN) Sustainable Development Agenda provides a shared blueprint for peace and prosperity for people and for the planet, considering our current situation and helping to create a plan. The core of this agenda is a set of seventeen Sustainable Development Goals (SDGs), which represent an urgent call for action by all countries - both developed and developing - in a global partnership. The CEOS SEO team has recently developed and released a set of innovative Jupyter notebooks addressing UN SDGs 6.6.1 (spatial extents of water-related ecosystems), 11.3.1 (ratio of land consumption rate to population growth rate), and 15.3.1 (proportion of land that is degraded over total land area). These notebooks empower users by providing features that will assist with streamlining analysis ready data retrieval, processing, and visualization. We have recently incorporated several machine learning techniques in these notebooks. In this paper, we present the lessons learned from our experience on classifying land using supervised and unsupervised machine learning techniques using ODC framework for UN SDGs. We identify the current limitations of ODC to seamlessly support machine learning techniques. We propose features that would help machine learning, specifically within the ODC framework. We propose a thematic indexing/loading of data for both unsupervised learning as well as data annotation/labeling pipeline. Currently, ODC supports machine learning by separating data-management from the analysis process. It works as a mechanism to load cubes of data. ODC does not natively support features that are vital in machine learning such as validation splits, fair/balanced sampling, establishing load size constraints, etc. We believe that our proposed features will empower users by providing features that bring machine learning techniques closed to ODC. Enhancements to ODC to better accommodate machine learning techniques can assist in fulfilling UN SDGs such as 6.3.2, 6.4.2, 6.6.1, 11.3.1, 14.1.1, 15.1.1, 15.3.1, and 15.4.2.

Syed R Rizvi↗

NASA NTRSDate not supplied

GeneLab: The NASA Systems Biology Platform for Space Omics Repository, Analysis and Visualization

The NASA GeneLab project capitalizes on multi-omic technologies to maximize the return on spaceflight experiments. To do this, GeneLab maintains a publicly accessible database (GLDS) that houses spaceflight and spaceflight relevant multi-omics dataand collaborates with NASA principal investigators and projects to generate additional omics data. GeneLab houses more than 220 transcriptomic, proteomic, metabolomic and epigenomic datasets from plant, animal and microbial experiments, with a growing number of these having been produced by the GeneLab sample processing lab. The GLDS contains rich metadata about each experiment and has recently integrated radiation dosimetery data from experiments flown on the Space Shuttle. GeneLab has also recently implemented an effort to present processed data in the GLDS in addition to the raw omics data. The processed data will enable interpretationof the data by a larger group of students, scientists and the general public. Standard pipelines for the transformation of raw data into visualizations were developed by four GeneLab Analysis Working Groups (animals, plants, microbes, multi-omics) comprised of over 120 scientists from NASA, industry, and academia. To explore the data, the GLDS provides users various tools for data analysis, collaborative workspace for file storage and sharing, and a visualization portal. The analysis platform built using the Galaxy toolshed provides access to a broad variety of users including those with limited bioinformatics experience and students to learn how to analyze spaceflight omics data. The visualization portal takes GeneLab one step closer to data democratization by removing all bioinformatics requisites to interpret transcriptomics data hosted in the repository. Discoveries made using GeneLabhave begunand will continue to deepen our understanding of biology, advance the field of genomics, and help to discover cures for diseases, create better diagnostic tools, and ultimately allow astronauts to better withstand the rigors of long-duration spaceflight.

Samrawit Getachew Gebre↗

NASA NTRSDate not supplied

GeneLab: The NASA Systems Biology Platform for Space Omics Repository, Analysis and Visualization

The NASA GeneLab project capitalizes on multi-omic technologies to maximize the return on spaceflight experiments. To do this, GeneLab maintains a publicly accessible database (GLDS) that houses spaceflight and spaceflight relevant multi-omics data, and collaborates with NASA principal investigators and projects to generate additional omics data. GeneLab houses more than 220 transcriptomic, proteomic, metabolomic and epigenomic datasets from plant, animal and microbial experiments, with a growing number of these having been produced by the GeneLab sample processing lab. The GLDS contains rich metadata about each experiment and has recently integrated radiation dosimetery data from experiments flown on the Space Shuttle. GeneLab has also recently implemented an effort to present processed data in the GLDS in addition to the raw omics data. The processed data will enable interpretation of the data by a larger group of students, scientists and the general public. Standard pipelines for the transformation of raw data into visualizations were developed by four GeneLab Analysis Working Groups (animals, plants, microbes, multi-omics) comprised of over 120 scientists from NASA, industry, and academia. To explore the data, the GLDS provides users various tools for data analysis, collaborative workspace for file storage and sharing, and a visualization portal. The analysis platform built using the Galaxy toolshed provides access to a broad variety of users including those with limited bioinformatics experience and students to learn how to analyze spaceflight omics data. The visualization portal takes GeneLab one step closer to data democratization by removing all bioinformatics requisites to interpret transcriptomics data hosted in the repository. Discoveries made using GeneLab have begun and will continue to deepen our understanding of biology, advance the field of genomics, and help to discover cures for diseases, create better diagnostic tools, and ultimately allow astronauts to better withstand the rigors of long-duration spaceflight.

Samrawit Gebre↗

NASA NTRSDate not supplied

WEBINAR, May 6: New Discoveries Using GeneLab

The NASA GeneLab project capitalizes on multi-omic technologies to maximize the return on spaceflight experiments. To do this, GeneLab maintains a publicly accessible database (GLDS) that houses spaceflight and spaceflight relevant multi-omics data and collaborates with NASA principal investigators and projects to generate additional omics data. GeneLab houses more than 220 transcriptomic, proteomic, metabolomic and epigenomic datasets from plant, animal and microbial experiments, with a growing number of these having been produced by the GeneLab sample processing lab. The GLDS contains rich metadata about each experiment and has recently integrated radiation dosimetry data from experiments flown on the Space Shuttle. GeneLab has also recently implemented an effort to present processed data in the GLDS in addition to the raw omics data. The processed data will enable interpretation of the data by a larger group of students, scientists and the general public. Standard pipelines for the transformation of raw data into visualizations were developed by four GeneLab Analysis Working Groups (animals, plants, microbes, multi-omics) comprised of over 120 scientists from NASA, industry, and academia. To explore the data, the GLDS provides users various tools for data analysis, collaborative workspace for file storage and sharing, and a visualization portal. The analysis platform built using the Galaxy toolshed provides access to a broad variety of users including those with limited bioinformatics experience and students to learn how to analyze spaceflight omics data. The visualization portal takes GeneLab one step closer to data democratization by removing all bioinformatics requisites to interpret transcriptomics data hosted in the repository. Discoveries made using GeneLab have begun and will continue to deepen our understanding of biology, advance the field of genomics, and help to discover cures for diseases, create better diagnostic tools, and ultimately allow astronauts to better withstand the rigors of long-duration spaceflight.

Sylvain V. Costes↗

NASA NTRS2020

TESS Data Release Notes: Sector 24, DR35

These Data Release Notes provide information on the processing and export of data from the Transiting Exoplanet Survey Satellite (TESS). The data products included in this data release are full frame images (FFIs), target pixel fi les, light curve fi les, collateral pixel fi les, cotrending basis vectors (CBVs), and Data Validation (DV) reports, time series, and associated xml fi les. These data products were generated by the TESS Science Processing Operations Center (SPOC, Jenkins et al., 2016) at NASA Ames Research Center from data collected by the TESS instrument, which is managed by the TESS Payload Operations Center (POC) at Massachusetts Institute of Technology (MIT). The format and content of these data products are documented in the Science Data Products Description Document (SDPDD). The SPOC science algorithms are based heavily on those of the Kepler Mission science pipeline, and are described in the Kepler Data Processing Handbook (Jenkins, 2019).2 The Data Validation algorithms are documented in Twicken et al. (2018) and Li et al. (2019). The TESS Instrument Handbook (Vanderspek et al., 2018) contains more information about the TESS instrument design, detector layout, data properties, and mission operations. The TESS Mission is funded by NASA's Science Mission Directorate.

TESS↗

NASA NTRSDate not supplied

AN INTRODUCTION TO THE GEONEX LEVEL-1G PRODUCTS: TOP-OF-ATMOSPHERE REFLECTANCE AND BRIGHTNESS TEMPERATURE

This paper introduces the GeoNEX (Geostationary-NASA Earth eXchange) Level-1G products of top-of-atmosphere (TOA) reflectance and brightness temperature. The products use data streams from the latest geostationary (GEO) sensors including the GOES-16/17 ABI and the Himawari-8/9 AHI. The GeoNEX processing pipeline starts by converting digital numbers to physical quantities with the latest radiometric calibration information. It integrates algorithms to automatically detect and remove residual geolocation errors, to estimate the pixel-wise data-acquisition time, and to accurately calculate the solar illumination angles for each pixel in the domain at every time step. The outputs are reprojected to a globally tiled common grid in geographic coordinates designed to facilitate inter-comparisons and/or synergies between the GeoNEX products and existing Earth observation datasets from polar-orbiting satellites. Therefore, the GeoNEX L1G products provide accurate and consistent TOA reflectance and brightness temperature datasets for scientific analyses and downstream product development.

Geostationary satellite, GOES-16, Himawari-8, NASA↗

NASA NTRSDate not supplied

A Preliminary Modeling Study of Biofilm Accumulation in the Water Recovery System

Bacterial biofilms are ubiquitous in wastewater systems on earth and in spacecraft, such as in the International Space Station (ISS) wastewater processing assembly (WPA), where they cause problems in the tank, solenoid valves, and pipelines. Downstream filter applications, tank cycling, and regular biocide water flushing have been used to control biofilm accumulation on board the ISS. Biofilm control is expected to be a challenge for long-term missions with a dormancy period of up to a year, as stagnant water systems are highly susceptible to biofilm growth. Flushing of the system with biocidal water has been proposed to avoid biomass problems for long-term missions. To validate the proposed flush method, a mathematical model, based on the metabolism maintenance rate of bacteria, is being developed to understand the current biofilm accumulation rate in the ISS WPA system and to calculate the biomass production rate under dormancy-like conditions. This method of quantification of biofilm can be applied as a function of nutrient inputs to guide the selection and optimization of biofilm mitigation approaches. The method can also be helpful in understanding, defining, quantifying, visualizing, and simulating the state of the water processing system during operation and after dormancy.

Angie M Diaz↗