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Hepatic transcriptome analyses of juvenile white bass ( Morone chrysops ) when fed diets where fish meal is partially or totally replaced by alternative protein sources

White bass (Morone chrysops) are a popular sportfish throughout the southern United States, and one parent of the commercially-successful hybrid striped bass (M. chrysops male x M. saxatilis female). Currently, white bass are cultured using diets formulated for other carnivorous fish, such as largemouth bass (Micropterus salmoides) or hybrid striped bass and contain a significant percentage of marine fish meal. Since there are no studies regarding the utilization of alternative proteins in this species, we evaluated the global gene expression of white bass fed diets in which fish meal was partially or totally replaced by various combinations of soybean meal, poultry by-product meal, canola meal, soy protein concentrate, wheat gluten, or a commercial protein blend (Pro Cision™). Six isonitrogenous (40% protein), isolipidic (11%), and isocaloric (17.1 kJ/g) diets were formulated to meet the known nutrient and energy requirements of largemouth bass and hybrid striped bass using nutrient availability data for most of the dietary ingredients. One of the test diets consisted exclusively of plant protein sources. Juvenile white bass (40.2 g initial weight) were stocked into a flow-through aquaculture system (three tanks/diet; 10 fish/tank) and fed the test diets twice daily to satiation for 60 days. RNA sequencing and bioinformatic analyses revealed significant differentially expressed genes between all test diets when compared to fish meal control. A total of 1,260 differentially expressed genes were identified, with major ontology relating to cell cycle and metabolic processes as well as immune gene functions. This data will be useful as a resource for future refinements to moronid diet formulation, as marine fish meal becomes limiting and plant ingredients are increasingly added as a reliable protein source

59 BASIC BIOLOGICAL SCIENCES↗

Autonomous Inversion of In Situ Deformation Measurement Data for Injection-Induced Stress Change

Geologic carbon storage (GCS) is likely to play a key part of the global effort to dramatically reduce CO2 emissions and perhaps even reduce atmospheric CO2 concentrations through carbon negative operations. A critical part of effort to commercialize and widely deploy this technology is developing the capability to rapidly assimilate real-time monitoring data into a form that will enable site operators to make decisions to manage the safe and efficient operations. Two of the risks associate with GCS are the risk of inducing fractures in the sealing formations that can create leakage pathways and the risk of inducing earthquakes of sufficient magnitude to cause public concern, property damage, or safety risks. To properly manage these risks the site operator needs to know the initial state of stress, the change in stress induced by injection, and the relationship between operational parameters such as injection rate and pressure and the change in stress. Current methods of estimating the change in stress require choosing the type of constitutive model and the model parameters based on core, log, and geophysical data during the characterization phase, with little feedback from operational observations to validate or refine these choices. These characterization methods interrogate the geologic formations using length scales, loading rates or magnitudes that are quite different from those encountered by the actual storage system. It is shown that errors in the assumed constitutive response, even when informed by laboratory tests on core samples, are likely to be common, large, and underestimate the magnitude of stress change caused by injection. Recent advances in borehole-based strain instruments and borehole and surface-based tilt and displacement instruments have now enabled monitoring of the deformation of the storage system throughout its operational lifespan. This data can enable validation and refinement of the knowledge of the geomechanical properties and state of the system, but brings with it a challenge to transform the raw data into actionable knowledge. We demonstrate a method that uses automatic differentiation and a finite-element based geomechanical model perform a gradient-based deterministic inversion of geomechanical monitoring data. This approach allows autonomous integration of the instrument data without the need for time consuming manual interpretation and selection of updated model parameters. Furthermore, only isotropic linear elasticity is considered in this paper, the approach presented is very flexible as to what type of geomechanical constitutive response can be used. The approach is easily adaptable to nonlinear physics-based constitutive models to account for common rock behaviors such as creep and plasticity. The approach also enables training of machine learning-based constitutive models by allowing back propagation of errors through the finite element calculations. This enables strongly enforcing known physics, such as conservation of momentum and continuity, while allowing data-driven models to learn the truly unknown physics such as the constitutive or petrophysical responses.

Burghardt, Jeffrey A.↗

Controlled Vocabularies Boost International Participation and Normalization of Searches

The Global Change Master Directory's (GCMD) science staff set out to document Earth science data and provide a mechanism for it's discovery in fulfillment of a commitment to NASA's Earth Science progam and to the Committee on Earth Observation Satellites' (CEOS) International Directory Network (IDN.) At the time, whether to offer a controlled vocabulary search or a free-text search was resolved with a decision to support both. The feedback from the user community indicated that being asked to independently determine the appropriate 'English" words through a free-text search would be very difficult. The preference was to be 'prompted' for relevant keywords through the use of a hierarchy of well-designed science keywords. The controlled keywords serve to 'normalize' the search through knowledgeable input by metadata providers. Earth science keyword taxonomies were developed, rules for additions, deletions, and modifications were created. Secondary sets of controlled vocabularies for related descriptors such as projects, data centers, instruments, platforms, related data set link types, and locations, along with free-text searches assist users in further refining their search results. Through this robust 'search and refine' capability in the GCMD users are directed to the data and services they seek. The next step in guiding users more directly to the resources they desire is to build a 'reasoning' capability for search through the use of ontologies. Incorporating twelve sets of Earth science keyword taxonomies has boosted the GCMD S ability to help users define and more directly retrieve data of choice.

Olsen, Lola M.↗

Contributions of GRACE to Climate Monitoring

The NASA/German Gravity Recovery and Climate Experiment (GRACE) was launched in March 2002. Rather than looking downward, GRACE continuously monitors the locations of and precise distance between twin satellites which orbit in tandem about 200 km apart. Variations in mass near Earth's surface cause heterogeneities in its gravity field, which in turn affect the orbits of satellites. Thus scientists can use GRACE data to map Earth's gravity field with enough accuracy to discern month to month changes caused by ocean circulation and redistribution of water stored on and in the land. Other gravitational influences, such as atmospheric circulation, post-glacial rebound, and solid earth movements are either independently determined and removed or are negligible on a monthly to sub-decadal timescale. Despite its coarse spatial (>150,000 sq km at mid-latitudes) and temporal (approx monthly) resolutions, GRACE has enabled significant advancements in the oceanic, hydrologic, and cryospheric science, and has great potential for climate monitoring, because it is the only global observing system able to measure ocean bottom pressures, total terrestrial water storage, and ice mass changes. The best known GRACE results are estimates of Greenland and Antarctic ice sheet loss rates. Previously, scientists had estimated ice mass losses using ground and satellite based altimetry and surface mass balance estimates based on snowfall accumulation and glacier discharge. While such measurements are still very useful for their spatial detail, they are imperfectly correlated with large-scale ice mass changes, due to snow and ice compaction and incomplete spatial coverage. GRACE enables scientists to generate monthly time series of Greenland and Antarctic ice mass, which have confirmed the shrinking of the polar ice sheets, one of the most obvious and indisputable manifestations of climate change. Further, GRACE has located and quantified hot spots of ice loss in southeastern Greenland and western Antarctica. For 2002 to present, the rate of ice mass loss has been 200 to 300 GT/yr in Greenland and 70 to 210 GT/yr in Antarctica, and some scientists are suggesting that the rates are accelerating. Similarly, GRACE has been used to monitor mass changes in alpine glaciers. Tamisiea et al. first characterized glacier melt along the southern coast of Alaska, more recently estimated to be occurring at a rate of 84 GT/yr. Chen et al. estimated that Patagonian glaciers are melting at a rate of 28 GT/yr, and estimated that the high mountains of central Asia lose ice at a rate of 47 GT/yr. Tapley et al. and Wahr et al. presented the first GRACE based estimates of changes in column-integrated terrestrial water storage (TWS; the sum of ground-water, soil moisture, surface waters, snow, ice, and water stored in vegetation) at continental scales. Since then, dozens of studies have shown that GRACE based estimates of regional to continental scale TWS variations agree with independent information, and some innovative uses of GRACE data have been developed. Rodell et al. (2004) and Swenson and Wahr (2006) demonstrated that by combining GRACE derived terrestrial water storage changes with observations of precipitation and runoff in a river basin scale water budget, it was possible to produce new estimates of evapotranspiration and atmospheric moisture convergence, essential climate variables that are difficult to estimate accurately. Similarly, GRACE has been used to constrain estimates of global river discharge and the contribution of changes in TWS to sea level rise. Crowley et al. observed a negative correlation between interannual TWS anomalies in the Amazon and the Congo River basin. Yeh et al. and Rodell et al. estimated regionally averaged groundwater storage variations based on GRACE and auxiliary observations. Rodell et al. and Tiwari et al. applied that method to quantify massive groundwater depletion in northern India caused by over reliance on aquifers for irration, and Famiglietti et al. found a similar situation in California's Central Valley. Zaitchik et al. and Lo et al. described approaches to use GRACE to constrain hydrological models, enabling integration of GRACE data with other observations and achieving much higher spatial and temporal resolutions than GRACE alone. Such approaches are now supporting applications including drought and water resources monitoring. Oceanography has likewise benefitted from the independent nature of GRACE observations. One application is measurement of the mass component of sea level rise, which complements radar altimetry and in situ measurements. GRACE also measures ocean bottom pressures (OBP), which help to refine understanding and modeling of ocean circulation and the ocean's fresh water budget, among other things. For example, Hayakawa et al. showed that GRACE observes OBP patterns absent from the background models of oceanic variability. Morison et al. used GRACE to describe important decadal scale shifts in circulation and an ongoing trend of freshening of the western Arctic, important indicators of climate variability. The research of Song and Zlotnicki and Chambers and Willis on GRACE-derived ocean bottom pressures in the sub-polar gyre led to the discovery of an ENSO teleconnection and a long-term change in OBP in the North Pacific sub-polar gyre that was not predicted by an ocean model. Further, Chambers and Willis were able to identify an internal redistribution of mass between Atlantic and Pacific Oceans lasting at least six years, which was not predicted by ocean models and was the first direct evidence of sustained mass transport from one ocean basin to another on periods longer than a year. Boening et al. observed a record increase in OBP over part of the southeastern Pacific in late 2009 and early 2010, primarily caused by wind stress curl associated with a strong and persistent anticyclone and likely related to the concurrent Central Pacific El Nino. GRACE has far surpassed its 5-year design lifetime, but it will likely succumb to the aging of batteries and instrument systems sometime in the next few years. NASA has begun initial development of a follow-on to GRACE with very similar design, which could launch as soon as 2016 and would provide continuity in the data record while improving resolution slightly. Higher resolution time variable gravity missions are also on the drawing board .

Rodell, Matthew↗

Magnetic, electrical and structural properties of the Re-doped ruthenocuprate Ru{sub 1−x}Re{sub x}Sr{sub 2}GdCu{sub 2}O{sub y}

Highlights: • We investigated the effect of the dilution of magnetic Ru sub-lattice of RuSr{sub 2}GdCu{sub 2}O{sub 8}. • We synthesized the doped compound Rui{sub x}Re{sub x}Sr{sub 2}GdCu{sub 2}O{sub y}, for 3%, 6%, 9% and 12% Re. • Re would affect the electron coupling: just 3 and 6% samples were superconductor. • Superconductivity emergence strongly affects magnetic properties of 3 and 6% samples. • A weak ferromagnetic component is consistent with a globally antiferromagnetic system. - Abstract: Despite the discovery of new superconductors classes, high-Tc oxides continue to be a current topic, because of their complex phase diagrams and doping-dependant effects (allowing one to investigate the interaction between orbitals), as well as structural properties such as lattice distortion and charge ordering, among many others. Ruthenocuprates are magnetic superconductors in which the magnetic transition temperature is much higher than the critical superconducting temperature, making them unique compounds. With the aim of investigating the dilution of the magnetic Ru sub-lattice, we proposed the synthesis of the Ru{sub 1−x}Re{sub x}Sr{sub 2}GdCu{sub 2}O{sub y} ruthenocuprate-type family, adapting the known two-step process (double perovskite + CuO) by directly doping the double perovskite, thus obtaining the perovskite compound Sr{sub 2}GdRu{sub 1−x}Re{sub x}O{sub y}, which represents a new synthesis process to the best of our knowledge. Our samples were structurally characterized through X-ray diffraction, and the patterns were analysed via Rietveld refinement. A complete magnetic characterization as a function of temperature and applied field, as well as transport measurements were carried out. We discuss our results in the light of the two-lattice model for ruthenocuprates, and a relation between RuO{sub 2} (magnetic) and CuO{sub 2} (superconductor) sub-lattices can clearly be observed.

36 MATERIALS SCIENCE↗

Insights into Rotational and Translational Dynamics in Mixtures of Ethylene Glycol and Choline Chloride Using Nuclear Magnetic Resonance Techniques

This work examines molecular dynamics and interactions in ethylene glycol–choline chloride (EG–ChCl) mixtures across 0–33 mol % ChCl, spanning the true eutectic region near 17–20 mol % and the commonly used 1:2 formulation. We combine pulsed-field-gradient (PFG) diffusion, fast-field-cycling (FFC) relaxometry, temperature-dependent 13 C T 1 , and nuclear Overhauser effect spectroscopy (NOESY) to disentangle local from macroscopic dynamics. PFG and FFC show that both translational and average rotational motions largely track the strong increase in viscosity with ChCl content, with ethylene glycol consistently diffusing faster than the choline cation and no global dynamical anomaly at the eutectic composition. More subtle, site-specific composition effects nevertheless emerge. The ratio of the diffusion coefficient of the hydroxyl group of choline to the diffusion coefficient of the methyl group of choline displays a shallow minimum in the 17–25 mol % region, indicating a modest change in how the hydroxyl-bearing end of choline samples the underlying translational motion relative to the methyl groups. 13 C T 1 analysis shows that rotational correlation times at 25 °C generally increase with ChCl, reflecting viscosity-coupled slowing, while the CH 2 –N α site exhibits a small but reproducible deviation from this monotonic trend near the eutectic. NOESY spectra at similar compositions reveal enhanced cross-relaxation between EG and choline protons, consistent with increased headgroup–solvent contact density rather than a wholesale structural rearrangement. Overall, our multitechnique study demonstrates that EG–ChCl dynamics are predominantly viscosity-dominated, with the eutectic region acting as a subtle dynamical crossover where specific choline segments become maximally coupled to the hydrogen-bond network. These insights refine the structure–dynamics picture of choline-chloride DESs and provide practical guidance for tuning composition in electrochemical, separation, and catalytic applications.

diffusion↗

Spatial and Temporal Correlates of Greenhouse Gas Diffusion from a Hydropower Reservoir in the Southern United States

Emissions of CO 2 and CH 4 from freshwater reservoirs constitute a globally significant source of atmospheric greenhouse gases (GHGs), but knowledge gaps remain with regard to spatiotemporal drivers of emissions. We document the spatial and seasonal variation in surface diffusion of CO 2 and CH 4 from Douglas Lake, a hydropower reservoir in Tennessee, USA. Monthly estimates across 13 reservoir sites from January to November 2010 indicated that surface diffusions ranged from 236 to 18,806 mg m -2 day -1 for CO 2 and 0 to 0.95 mg m -2 day -1 for CH 4 . Next, we developed statistical models using spatial and physicochemical variables to predict surface diffusions of CO 2 and CH 4 . Models explained 22.7 and 20.9% of the variation in CO 2 and CH4 diffusions, respectively, and identified pH, temperature, dissolved oxygen, and Julian day as the most informative important predictors. These findings provide baseline estimates of GHG emissions from a reservoir in eastern temperate North America a region for which estimates of reservoir GHGs emissions are limited. Our statistical models effectively characterized non-linear and threshold relationships between physicochemical predictors and GHG emissions. Further refinement of such models will aid in predicting current GHG emissions in unsampled reservoirs and forecasting future GHG emissions.

54 ENVIRONMENTAL SCIENCES↗

Nutrient Cycle Impacts on Forest Ecosystem Carbon Cycling: Improved Prediction of Climate Feedbacks from Coupled C–Nutrient Dynamics from Ecosystem to Regional Scales

One of the largest sources of uncertainty in the projected global mean temperature response to anthropogenic carbon (C) emissions is the role of the land surface in contributing to or mediating the rise in atmospheric CO2 [IPCC, 2007]. Development of ecosystem processes in global land surface models (LSMs) is far from complete, with major components such as the nitrogen (N) cycle only recently being implemented in some LSMs [Thornton et al., 2007; Sokolov et al., 2008; Xu-Ri and Prentice, 2008; Fisher et al., 2010]. Inclusion of the N cycle can reduce terrestrial C uptake by up to ~50 Pg C·y-1 globally [Figure 1: Fisher et al., 2010]. However, even these early representations of the N cycle in LSMs are missing critical plant–soil interactions that have been shown empirically to exert a major influence over ecosystem C fluxes. Here we propose to use a newly developed plant N model by PI Fisher as a theoretical and analytical framework for integrating novel field-based methods and long-term flux observations to quantify the impacts of belowground processes on fluxes of C, water and energy, from ecosystem to regional scales. Although the model (Fixation & Uptake of Nitrogen: FUN) is one of the more advanced global plant N models available, the model is dependent on theoretical C flux curves optimizing plant C allocation to root exudates, symbiotic bacteria and fungi, and retranslocation enzymes that have not been confirmed or validated with measurements—primarily because the measurement techniques had not been available, until recently. Parallel to the model developments by Fisher et al. were developments in in situ direct measurement techniques by Phillips et al. [2008; 2011], who were able to measure C fluxes from roots to soil. Not only do these techniques have the capacity to confirm and/or modify the modeling components in the Fisher et al. plant N model, but they also provide insight into how belowground C supply from roots couples the C–N cycles at the micro-site and ecosystem scales. Collectively, the integration of measurements and modeling provides empirical grounding for theoretical process behavior. Three critical components will enable us to successfully carry out this research: I) new methodological approaches developed by co-I Phillips for in situ measurement of root exudates, and belowground C fluxes that allow for testing and refinement of FUN [Phillips et al., 2008; Phillips et al., 2011]; II) an innovative research design that involves data integration across an ecological gradient, including a DOE-supported AmeriFlux tower operated by co-I Dragoni, which is essential to determining the ecosystem flux impacts [Dragoni et al., 2011]; and, III) new results from co-I Evans showing unique spectral signatures of trees in association with ectomycorrhizae (ECM) and arbuscular mycorrhizae (AM) fungi from Landsat data using spectral mixture analysis (SMA), which is key to scaling up belowground processes to regional scales [Andersson et al., 2009]. Each component provides feedback to and is intimately linked with all other components; no part operates in isolation. Our team and approach combines expertise in modeling, remote sensing, ecosystem ecology, plant physiology, soil biogeochemistry, and micrometeorology to address these inherently interdisciplinary problems and questions. This proposal directly responds to the focused Science Area of the FOA: “The role of belowground processes and mechanisms across scales (e.g., soil carbon transformation, root dynamics, mycorrhizal interactions, and plant mediated (e.g., root exudates) biogeochemical transformations) associated with a changing climate.

54 ENVIRONMENTAL SCIENCES↗

Unveiling the dark matter of riverine dissolved organic matter and its role in molecular chemodiversity

Chemodiversity of riverine dissolved organic matter (DOM) plays a crucial role in global elemental cycles and ecosystem function. However, DOM “dark matter”—molecules without assigned specific formulae—remain unexplored in the interpretation of chemodiversity. Here, we systematically investigated the characteristics and drivers of dark matter and its impacts on DOM chemodiversity using 551 river water and sediment samples. Compared to known matter with specific formulae, dark matter exhibited lower molecular weight and diversity, but higher compositional dissimilarity, with dissolved organic carbon (DOC) as the primary driver. Including dark matter into chemodiversity analysis changed mass, diversity, and compositional dissimilarity of DOM from –10.1 to –0.04 %, –0.7 to 4.9 %, and 0.4 to 28.8 % in waters, and from –17.5 to 5.7 %, –10.5 to 19.2 %, and –22.3 to 33.1 % in sediments, respectively. DOC mediated these ecosystem-dependent effects: lower DOC amplified the effects on chemodiversity in waters, whereas in sediments, the effects shifted from negative to positive with changing DOC. Furthermore, ignoring dark matter would overestimate the regulatory role of DOC on sediment DOM chemodiversity. In conclusion, collectively, our findings clarify the influence of dark matter on DOM chemodiversity assessments across environmental gradients, improving understanding of riverine DOM and refining its analytical framework.

Chemodiversity↗

Differential cosmic expansion and the Hubble flow anisotropy

The Universe on scales 10–100 h {sup −1}Mpc is dominated by a cosmic web of voids, filaments, sheets and knots of galaxy clusters. These structures participate differently in the global expansion of the Universe: from non-expanding clusters to the above average expansion rate of voids. In this paper we characterize Hubble expansion anisotropies in the COMPOSITE sample of 4534 galaxies and clusters. We concentrate on the dipole and quadrupole in the rest frame of the Local Group. These both have statistically significant amplitudes. These anisotropies, and their redshift dependence, cannot be explained solely by a boost of the Local Group in the Friedmann-Lemaitre-Robertson-Walker (FLRW) model which expands isotropically in the rest frame of the cosmic microwave background (CMB) radiation. We simulate the local expansion of the Universe with inhomogeneous Szekeres solutions, which match the standard FLRW model on ∼> 100 h {sup −1}Mpc scales but exhibit nonkinematic relativistic differential expansion on small scales. We restrict models to be consistent with observed CMB temperature anisotropies, while simultaneously fitting the redshift variation of the Hubble expansion dipole. We include features to account for both the Local Void and the 'Great Attractor'. While this naturally accounts for the Hubble expansion and CMB dipoles, the simulated quadrupoles are smaller than observed. Further refinement to incorporate additional structures may improve this. This would enable a test of the hypothesis that some large angle CMB anomalies result from failing to treat the relativistic differential expansion of the background geometry; a natural feature of solutions to Einstein's equations not included in the current standard model of cosmology.

79 ASTRONOMY AND ASTROPHYSICS↗

Motion as perturbation. II. Development of the method for dosimetric analysis of motion effects with fixed-gantry IMRT

Purpose: In this work, the feasibility of implementing a motion-perturbation approach to accurately estimate volumetric dose in the presence of organ motion—previously demonstrated for VMAT-–is studied for static gantry IMRT. The method's accuracy is improved for the voxels that have very low planned dose but acquire appreciable dose due to motion. The study describes the modified algorithm and its experimental validation and provides an example of a clinical application. Methods: A contoured region-of-interest is propagated according to the predefined motion kernel throughout time-resolved 4D phantom dose grids. This timed series of 3D dose grids is produced by the measurement-guided dose reconstruction algorithm, based on an irradiation of a staticARCCHECK (AC) helical dosimeter array (Sun Nuclear Corp., Melbourne, FL). Each moving voxel collects dose over the dynamic simulation. The difference in dose-to-moving voxel vs dose-to-static voxel in-phantom forms the basis of a motion perturbation correction that is applied to the corresponding voxel in the patient dataset. A new method to synchronize the accelerator and dosimeter clocks, applicable to fixed-gantry IMRT, was developed. Refinements to the algorithm account for the excursion of low dose voxels into high dose regions, causing appreciable dose increase due to motion (LDVE correction). For experimental validation, four plans using TG-119 structure sets and objectives were produced using segmented IMRT direct machine parameters optimization in Pinnacle treatment planning system (v. 9.6, Philips Radiation Oncology Systems, Fitchburg, WI). All beams were delivered with the gantry angle of 0°. Each beam was delivered three times: (1) to the static AC centered on the room lasers; (2) to a static phantom containing a MAPCHECK2 (MC2) planar diode array dosimeter (Sun Nuclear); and (3) to the moving MC2 phantom. The motion trajectory was an ellipse in the IEC XY plane, with 3 and 1.5 cm axes. The period was 5 s, with the resulting average motion speed of 1.45 cm/s. The motion-perturbed high resolution (2 mm voxel) volumetric dose grids on the MC2 phantom were generated for each beam. From each grid, a coronal dose plane at the detector level was extracted and compared to the corresponding moving MC2 measurement, using gamma analysis with both global (G) and local (L) dose-error normalization. Results: Using the TG-119 criteria of (3%G/3 mm), per beam average gamma analysis passing rates exceeded 95% in all cases. No individual beam had a passing rate below 91%. LDVE correction eliminated systematic disagreement patterns at the beams’ aperture edges. In a representative example, application of LDVE correction improved (2%L/2 mm) gamma analysis passing rate for an IMRT beam from 74% to 98%. Conclusions: The effect of motion on the moving region-of-interest IMRT dose can be estimated with a standard, static phantom QA measurement, provided the motion characteristics are independently known from 4D CT or otherwise. The motion-perturbed absolute dose estimates were validated by the direct planar diode array measurements, and were found to reliably agree with them in a homogeneous phantom.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Methods integrating innate and adaptive immune responses in human in vitro immunization assays

Rapid vaccine development and innovative immunotherapeutics are critical in the fight against emerging outbreaks and global pandemic threats, yet the high costs and prolonged timelines for developing new vaccines underscore the urgent need for robust, predictive pre-clinical testing platforms. The rapid down-selection of vaccine candidates and identification of optimal vaccine formulations can be performed using human in vitro immunization (IVI) assays that recapitulate the complex interactions of the innate and adaptive human immune response. In this review, we present a comprehensive evaluation of three key IVI platforms: the whole blood assay (WBA), monocyte-derived dendritic cell (MoDC) assay with dendritic cell-T cell interface assay (DTI), and the microphysiological human tissue construct assay (HTC). The WBA offers a cost-effective and straightforward approach, while the MoDC + DTI system represents the current gold standard for balancing experimental efficiency with immunological complexity. The HTC assay, by mimicking both spatial and temporal aspects of immune interactions, provides enhanced physiological relevance. We discuss the methodological advantages and limitations of each platform, explore their roles in rapid vaccine candidate screening, and propose strategies for integrating these assays with complementary in vivo models. These insights pave the way for refining IVI assays and accelerating the translational pipeline for next-generation vaccines and immunotherapies.

59 BASIC BIOLOGICAL SCIENCES↗

Putting us on the Map: Remote Sensing Investigation of the Ancient Maya Landscape

A common problem for archaeologists studying ancient settlement in the Maya Lowlands is overcoming the dense vegetation in order to obtain an accurate regional perspective of the presence of archaeological sites, their exact locations and their overall extents. Most often this is done by extensive ground surveys in which many individuals chop parallel paths through the vegetation in search of sites. Once a site is found an effort is made to mark its location on a regional map and to explore its perimeter. Obtaining locational information has been made dramatically easier in recent years with the advent of improved Global Positioning Systems (GPS), however the process of initial identification of sites and the determination of their borders is exceedingly labor intensive and has remained relatively unchanged since the beginning of settlement surveys in the region in the 1950's. Currently, we are revolutionizing settlement survey in the Maya Lowlands by using remotely sensed data from IKONOS, Quickbird, and Eol, satellites. The Ancient Maya built their cities, towns and even their smallest hamlets using excavated limestone and lime plasters. We propose that the decay of these structures provides a unique microenvironment for the growth of vegetation as the levels of moisture and nutrition within the ruins vary substantially from those in the surrounding forest. These microenvironmental differences on the ground are likewise represented by compositional differences in the forest canopy both in the species present and in leaf color (representing moisture/nutritional stress) visible through the analysis of high- resolution satellite data. In this way the detailed analysis of forest composition can reveal a detailed picture of the ancient settlements that lie beneath it. Preliminary examinations using this technique have been very successful and we are refining these techniques in order to efficiently comprehend the details of Ancient Maya settlement in the Lowlands.

Sever, Thomas L.↗

Modeling occupancy-driven building loads for large and diversified building stocks through the use of parametric schedules

Building energy modeling provides a fundamental tool to assess the potential for energy efficiency to contribute to reducing world energy consumption and global emissions. Occupancy-related operations are a key source of uncertainty for building energy analysis, particularly for aggregated building stocks. At a district or city level, it is critical to estimate aggregated power load profiles for sizing power grid infrastructure, power plant capacity allocation, and energy efficiency measures. The stochastic nature of behavior-related operations complicates the creation of models that accurately capture building load profiles for entire building stocks. This research introduces a new methodology called parametric schedules to model occupancy-driven schedules for large and diverse building stocks. In contrast to computationally expensive methodologies proposed in the literature, our work does not use a recursive time-consuming step. Occupancy is estimated by the extrapolation of operation times directly from metered electric consumption data; occupancy-related schedules are stochastically assigned to each building model, guaranteeing diversity of operation times in the stock. Our procedure has been tested on a large, diversified data-set of 25,000 commercial buildings in Los Angeles, California. It proved to be able to adequately represent the stochastic schedules diversity of the stock and to refine the stock calibration process by 1%. This innovative approach represents a useful asset for utility companies, grid operators, urban planners, and balancing authorities, seeking to improve building stock modeling and better estimate the impact of energy conservation measures. – This work is part of a larger stock modeling tool called ComStock, which is under development by NREL.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Optimal well placement and brine extraction for pressure management during CO 2 sequestration

Large-scale pressure increases resulting from carbon dioxide (CO 2 ) injection in the subsurface can potentially impact caprock integrity, induce reactivation of critically stressed faults, and drive CO 2 or brine through conductive features into shallow groundwater. Pressure management involving the extraction of native fluids from storage formations can be used to reduce such pressure increases. However, dealing with large volumes of extracted brine can be technically challenging and expensive. Selection of optimal well locations and pumping rates are critical for maximizing CO 2 storage and minimizing brine extraction during geologic CO 2 sequestration (GCS). Robust and efficient computerized algorithms combining reservoir models and optimization methods are needed to make proper decisions on well placement and pumping rates. This work presents a constrained differential evolution (CDE) algorithm for solving global optimization problems involving pressure management of GCS projects. Application of the CDE optimization methodology was demonstrated for a hypothetical CO 2 storage scenario in a deep sandstone reservoir in the Southern San Joaquin Basin in California, USA. Industrial-scale storage of CO 2 would generate significant pressure buildup in this formation, which in turn would raise concerns about induced seismicity due to presence of multiple faults surrounding the injection site. Through the CDE optimization algorithm coupled to a vertically-averaged reservoir simulator, we successfully estimated optimal solutions for brine extraction wells in the reservoir that would limit the local pressure along the faults to a prescribed threshold. Multiple realizations of the reservoir permeability field were created to understand the impact of reservoir heterogeneity on optimization results. Our results indicate that the reservoir slope and heterogeneity have significant impact on optimum extraction rates. Reservoir heterogeneity is also a significant factor for extraction well locations, suggesting that in practice decisions about extraction well placement through optimization should be made at later project stages when data from a few years of CO 2 injection have allowed iterative updating and refining of the reservoir forward models. Although the study focused on optimization of brine extraction, the CDE optimization methodology presented in this paper has also potential to solve other complex optimization problems related to GCS, such as increasing storage efficiency by enhancing injectivity and capillary and dissolution trapping.

58 GEOSCIENCES↗

Research Priorities to Incorporate Terrestrial-Aquatic Interfaces in Earth System Models. Workshop Report, September 7-9, 2016

The terrestrial-aquatic interface (TAI) is a highly dynamic component of the Earth system, developed from a near balance between terrestrial and aquatic conditions and forming unique processes and community assemblages. Furthermore, TAIs are known to play a critical role in carbon biogeochemical cycling and have the potential to provide major feedbacks to the Earth system (e.g., methane production). However, there is a lack of basic data and multiscale models to adequately describe how a changing climate can influence the key processes (also an unknown) related to Earth system–relevant feedbacks in these unique, ubiquitous ecosystems. In general, Earth system models (ESMs) have excluded TAI ecosystem processes, thus creating tremendous uncertainty as to how TAIs will influence climate feedbacks across a range of scales, spanning from local to global. For example, ESMs represent wetlands very simplistically at best (e.g., the Accelerated Climate Modeling for Energy project) and include only a static fraction of dry land or open water, entirely lacking key processes in these hybrid areas and critical climate and biological feedbacks between land and water. This new area of research, therefore, must integrate a variety of important research topics—plants, soil, hydrology, reactive transport, microbiology, genomics, and modeling—into a systems-level understanding that can be extended to improve predictive modeling capabilities. The goal of the September 2016 Research Priorities to Incorporate Terrestrial-Aquatic Interfaces in Earth System Models Workshop was to engage the scientific community in an open discussion about critical scientific gaps. These gaps and research topics demand immediate field investigations to gather data for representing these important, yet understudied and underrepresented, ecosystems in ESMs. Workshop results will inform the U.S. Department of Energy’s Office of Biological and Environmental Research (BER) as it plans and prepares for future research efforts that address the TAI gap through model-informed and model-inspired field studies. The resulting data will enable iterative refinement of high-resolution, next-generation ESMs. Specifically, the workshop (1) summarized past and current field, process, and modeling TAI research; (2) identified critical sensitivities and uncertainties in the systems; (3) identified key processes, traits, existing data, and environmental variables needed to adequately characterize these systems; and (4) discussed idealized strategies that couple models and experiments to advance the state of the science in TAI modeling, including potential experiments that would test and improve land model fidelity.

54 ENVIRONMENTAL SCIENCES↗

Evidence of Participation in the Advancement of Knowledge from 25 Years of Publications for the GLOBE Program

The Global Learning and Observations to Benefit the Environment (GLOBE) Program was announced on Earth Day 1994 and began on Earth Day 1995. Over the first 25 years of its operation, there have been more than 600 formal publications and 340 conference presentations about the program, in at least 15 languages. As the 25th anniversary of the program approached, we began a focused effort to find and characterize those publications in order to better understand GLOBE’s impact to date as well as its future potential. GLOBE was envisioned from the beginning as a science and education program, so GLOBE publications cover a wide range of topics across Earth system science as well as in education and evaluation topics. To characterize the collection, a large set of dimensions was first identified from the literature, across science and education. These include codes related to: motivation and conception of the research investigation, educator practices and training, education outcomes & demonstration that these outcomes were achieved, data and study scope, characteristics of the investigation or its findings. Application of these codes was first tested by three raters (the first three authors) on a subset of the publications, then refined to capture missing aspects. The full set of publications was then rated on the full set of criteria. As a second step, subsets of the collection with particularly in depth discussion of The GLOBE Program are now being analyzed in more detail. This poster will summarize various attributes of the GLOBE bibliography and identify areas of potential for further geoscience investigations.

Lin Chambers↗

Putting Us on the Map: Remote Sensing Investigation of the Ancient Maya Landscape

A common problem for archaeologists studying ancient settlement in the Maya Lowlands is overcoming the dense vegetation in order to obtain an accurate regional perspective of the presence of archaeological sites, their exact locations and their overall extents. Most often this is done by extensive ground surveys in which many individuals chop parallel paths through the vegetation in search of sites. Once a site is found an effort is made to mark its location on a regional map and to explore its perimeter. Obtaining locational information has been made dramatically easier in recent years with the advent of improved Global Positioning Systems (GPS), however the process of initial identification of sites and the determination of their borders is exceedingly labor intensive and has remained relatively unchanged since the beginning of settlement surveys in the region in the 1950 s. Currently, we are revolutionizing settlement survey in the Maya Lowlands by using remotely sensed data from IKONOS, Quickbird, and Eo 1, satellites as well as airborne AIRSAR radar data. The Ancient Maya built their cities, towns and even their smallest hamlets using excavated limestone and lime plasters. We propose that the decay of these structures provides a unique microenvironment for the growth of vegetation as the levels of moisture and nutrition within the ruins vary substantially from those in the surrounding forest. These microenvironmental differences on the ground are likewise represented by compositional differences in the forest canopy both in the species present and in leaf color (representing moisture/nutritional stress) visible through the analysis of high-resolution satellite data. In this way the detailed analysis of forest composition can reveal a detailed picture of the ancient settlements that lie beneath it. Preliminary examinations using this technique have been very successful and we are refining these techniques in order to efficiently comprehend the details of Ancient Maya settlement in the Lowlands.

Sever, Thomas L.↗