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At least 811 records · Page 45

Breaking the Crowther limit: Combining depth-sectioning and tilt tomography for high-resolution, wide-field 3D reconstructions

To date, high-resolution (<1 nm) imaging of extended objects in three-dimensions (3D) has not been possible. A restriction known as the Crowther criterion forces a tradeoff between object size and resolution for 3D reconstructions by tomography. Further, the sub-Angstrom resolution of aberration-corrected electron microscopes is accompanied by a greatly diminished depth of field, causing regions of larger specimens (>6 nm) to appear blurred or missing. We demonstrate a three-dimensional imaging method that overcomes both these limits by combining through-focal depth sectioning and traditional tilt-series tomography to reconstruct extended objects, with high-resolution, in all three dimensions. The large convergence angle in aberration corrected instruments now becomes a benefit and not a hindrance to higher quality reconstructions. A through-focal reconstruction over a 390 nm 3D carbon support containing over 100 dealloyed and nanoporous PtCu catalyst particles revealed with sub-nanometer detail the extensive and connected interior pore structure that is created by the dealloying instability.

3D imaging↗

Enhanced Microseismicity During Production Pumping Cessation at the San Emidio Geothermal Field (Nevada, USA) in December 2016

Abstract Tectonic activity, geothermal fluids, and microseismic events (MSEs) tend to occur in similar locations as a result of spatiotemporal changes in the subsurface stress state. To quantify this association, we analyze data from a dense seismic array deployed at the San Emidio geothermal field, Nevada for 1 week in December 2016 to coincide with a 19.45‐hr shutdown of all injection and production pumping operations. 123 MSEs were detected, of which 101 occurred during the shutdown. The spatial association of the MSEs with the production wells suggests a causal relationship between the production cessation and the MSEs. Here we performed a detailed analysis to investigate reservoir material properties, distribution of seismically activated faults, and local stress state. We determined the hypocenters, magnitudes, and focal mechanisms for the MSEs, P‐wave tomographic velocity model, and local stress tensor. The results show that most MSEs occurred near the production wells. Magnitudes fall between −2.2 and 0.0 with larger events located closer to the production wells. Most MSEs occurred within a westward‐dipping normal fault zone in the reservoir associated with anomalously low P‐wave velocity values. The focal mechanism and stress inversion results show predominantly normal faulting with the maximum horizontal stress oriented north‐south. We suggest that the MSEs during shutdown were triggered on pre‐existing, small‐scale, critically stressed fault patches in the reservoir as the pore pressure increased around the production wells when the production pumping ceased. We interpret the larger MSE magnitudes closer to the production wells as a result of higher pore pressure increase.

15 GEOTHERMAL ENERGY↗

DCYTB is a predictor of outcome in breast cancer that functions via iron-independent mechanisms

Background: Duodenal cytochrome b (DCYTB) is a ferrireductase that functions together with divalent metal transporter 1 (DMT1) to mediate dietary iron reduction and uptake in the duodenum. DCYTB is also a member of a 16-gene iron regulatory gene signature (IRGS) that predicts metastasis-free survival in breast cancer patients. To better understand the relationship between DCYTB and breast cancer, we explored in detail the prognostic significance and molecular function of DCYTB in breast cancer. Methods: The prognostic significance of DCYTB expression was evaluated using publicly available microarray data. Signaling Pathway Impact Analysis (SPIA) of microarray data was used to identify potential novel functions of DCYTB. The role of DCYTB was assessed using immunohistochemistry and measurements of iron uptake, iron metabolism, and FAK signaling. Results: High DCYTB expression was associated with prolonged survival in two large independent cohorts, together totaling 1610 patients (cohort #1, p = 1.6e-11, n = 741; cohort #2, p = 1.2e-05, n = 869; log-rank test) as well as in the Gene expression-based Outcome for Breast cancer Online (GOBO) cohort (p < 1.0e-05, n = 1379). High DCYTB expression was also associated with increased survival in homogeneously treated groups of patients who received either tamoxifen or chemotherapy. Immunohistochemistry revealed that DCYTB is localized on the plasma membrane of breast epithelial cells, and that expression is dramatically reduced in high-grade tumors. Surprisingly, neither overexpression nor knockdown of DCYTB affected levels of ferritin H, transferrin receptor, labile iron or total cellular iron in breast cancer cells. Because SPIA pathway analysis of patient microarray data revealed an association between DCYTB and the focal adhesion pathway, we examined the influence of DCYTB on FAK activation in breast cancer cells. These experiments reveal that DCYTB reduces adhesion and activation of focal adhesion kinase (FAK) and its adapter protein paxillin. Conclusions: DCYTB is an important predictor of outcome and is associated with response to therapy in breast cancer patients. DCYTB does not affect intracellular iron in breast cancer cells. Instead, DCYTB may retard cancer progression by reducing activation of FAK, a kinase that plays a central role in tumor cell adhesion and metastasis.

60 APPLIED LIFE SCIENCES↗

Fabrication of a Hybrid Transition Edge Sensor Array for Lynx

Lynx is a proposed NASA X-Ray telescope flight mission aimed at achieving state-of-the-art angular and energy resolution with a 100 kilopixel array to probe the hot energetic young universe in unprecedented detail. To achieve these goals, our team plans on leveraging our current work in development of the focal plane for the Athena X-Ray Integral Field Unit (X-IFU) while advancing the state-of-the-art in transition edge sensor (TES) X-ray detector technology. The TES is an optimal technology for achieving both high energy and fine angular resolution at the same time because pixel features can be made extremely small and the absorber which dominates the heat capacity can be tuned to meet resolution requirements. Specifically, the proposed mission concept calls for a hybrid detector of three different arrays fabricated in the same planar process in one focal plane and optimized for different science goals. The main arrays consist of 5x5 hydras, 25 pixels of 4 micron thick Au absorbers each with a different thermal link to one common TES. The outer array has absorbers on a 50-micron pitch for most of the 5 arc-minute field-of-view, and the inner array has 25-micron absorbers for the central 1 arc-minute region. A high resolution array consisting of single pixel 1 micron thick Au absorbers on 50-micron pitch will lie off to the side. Reading out an array of this magnitude will likely require improvements in indium bump bonding to superconducting flexible wiring. Fabrication of absorbers of two different sizes requires electroplating through a photoresist mold by careful tuning of the current density to achieve uniform flat absorbers on a fine pitch scale, followed by ion milling to yield narrow streets separating the pixels while preserving high quantum efficiency. We report on progress made at fabricating the hybrid array with different absorber sizes and thicknesses. Further, we also report on ongoing work to adequately heat sink the pixels with backside wire bonding and copper coating. We also report on work to improve detector pixel yield and top side indium bump bonding to flexible wiring.

Focal plane array↗

Long Wavelength Quantum Well Infrared Photodetector (QWIP) Research at Jet Propulsion Laboratory

One of the simplest device realizations of the classic particle-in-the-box problem of basic quantum mechanics is the Quantum Well Infrared Photodetector (QWIP). Optimization of the detector design and material growth and processing has culminated in the realization of a 15 ??utoff 128x128 focal plane array camera and a camera with large (256x256 pixel) focal plane array of QWIPs which can see at 8.5 ??holding forth great promise for a variety of applications in the 6-25 ??avelength range. This paper discusses the physics of the QWIP and QWIP technology development at Jet Propulsion Laboratory

QWIP↗

Polymer Stabilized Paraboloid Liquid Crystal Microlenses with Integrated Pancharatnam–Berry Phase

Aspheric lenses reduce aberration and provide sharper images with improved spot size compared to spherical lenses. Here this paper demonstrates that applying shear flow can produce plano-concave liquid crystal (LC) lens arrays with paraboloid aspheric profiles. The focal length of individual lenses, with a 0.2 mm aperture, decreases from 0.67 to 0.45 mm as the chiral dopant increases from 0 to 6 wt%. The focal length is also sensitive to the polarization state of the incoming light. The lenses are stabilized by photopolymerizing with 6 wt% of reactive monomer added to the LC. A qualitative explanation for the flow-induced lens formation and the optical properties of the lenses is provided. The potential tunability of the lenses in various fields and their use as paraboloid reflectors are discussed.

36 MATERIALS SCIENCE↗

Weather, hydroregime, and breeding effort influence juvenile recruitment of anurans: implications for climate change

Amphibians that primarily breed in ephemeral wetlands are especially vulnerable to climate change because they rely on rainfall or temperature to initiate breeding and create suitable hydroregimes (water duration, timing, frequency, depth) for reproductive success. Hydroregime effects on reproductive success are likely to differ among species because of differences in reproductive strategies: the length and timing of breeding period, rate of larval development, and timing of metamorphosis. We applied an information-theoretic approach to 22 consecutive years of continuous amphibian trapping data at eight ephemeral wetlands to test hypotheses regarding environmental (hydroregime, weather) and biological (adult breeding effort) factors affecting juvenile recruitment (JR) by six focal species representing four reproductive strategies. We hypothesized that (1) JR by species with similar reproductive strategies would be influenced by similar variables; (2) JR would be higher for all species when models encompassed the maximum time span of potential tadpole occurrence and development; and (3) JR rates within individual wetlands and breeding cycles would correlate most closely between species with similar breeding strategies. The best model for all focal species (except Scaphiopus holbrookii) encompassed the maximum time span and indicated that ≥1 hydroregime variable, total precipitation, or both were important drivers of reproductive success; average air temperature was not. Continuous hydroperiod through peak juvenile emigration was an important predictor of JR for species with prolonged breeding periods, slow larval development, and a “fixed” late spring start date for juvenile emigration (regardless of when oviposition occurred, or cohort age; Lithobates capito , Lithobates sphenocephalus ), but not for species with rapid larval development and continual emigration as cohorts complete metamorphosis ( Anaxyrus terrestris, Anaxyrus quercicus, Gastrophryne carolinensis, S. holbrookii ). Total rainfall was positively associated with recruitment for most species; depth characteristics affected species differently. Annual JR was positively correlated among species with similar reproductive strategies. Our results indicate that weather and hydroregime characteristics interact with reproductive strategies that differ among amphibian species and influence reproductive plasticity, opportunity, and success. In conclusion, effects of altered weather patterns associated with climate change on amphibian reproductive success may correspond more closely among species having similar reproductive strategies, with critical implications for population trends and assemblages.

54 ENVIRONMENTAL SCIENCES↗

Large‐ and small‐seeded species have contrasting functional neighborhoods in a subtropical forest

Abstract Forest community composition is the outcome of multiple forces, including those that increase taxonomic and functional divergence and those that promote convergence in traits. The mechanisms underlying these forces may not operate homogenously within communities; individuals of different species are never perfectly mixed, and thus, species tend to be surrounded and interact with different subsets of species. In fact, taxonomic and functional composition of neighborhoods of different focal species can be highly variable. Here, we examine whether mechanisms driving species‐level neighborhoods relate to intrinsic characteristics of focal species such as differences in life‐history and resource‐uptake strategies and in turn relate to species survival. We focus on two key characteristics: (1) seed mass, which defines a dominant axis of life‐history strategies related to stress tolerance, and (2) understory light preferences that sort species from light‐demanding pioneers to shade‐tolerant. We monitored seedling communities over 10 yr in Puerto Rico and calculated neighborhood trait dispersion in species‐level neighborhoods using seven functional traits. We examined whether species‐level characteristics, seed mass and preferred light conditions, influence patterns of functional dispersion in seedling neighborhoods using linear models. Then, we examined how species‐level functional neighborhoods impact seedling survival. We found that small‐ and large‐seeded species diverge in the type of functional neighborhoods they associate with. Large‐seeded species associate with neighbors that are more similar than expected in leaf economic traits, but more different than expected in seed mass and leaf area traits, while the opposite was found for small‐seeded species. This variation in species functional neighborhood was important in determining seedling survival. In sum, our results suggest that divergent and convergent forces do not operate homogenously over entire communities. Their relative role changes in space, and on a species‐by‐species basis, probably with a deterministic foundation linked to traits such as seed mass.

Umaña, María Natalia↗

The Effect of Stent Cell Geometry on Carotid Stenting Outcomes

PurposeThe aim of this study was to investigate the effect of stent cell geometry on midterm results of carotid artery stenting (CAS).Materials and MethodOne hundred fifty-five patients underwent CAS between February 2010 and December 2012. Ninety-one open- and 84 closed-cell stents were used in this non-randomized, retrospective study. Periprocedural complications were defined as the ones happened during the procedure or within 30 days afterwards. Starting from the 6th month after the procedure, in-stent restenosis was detected with multidetector computed tomography angiography and classified into four groups from focal restenosis to occlusion.ResultsEleven complications were encountered in the periprocedural period (four on the open- and seven on the closed-cell group). Total complication rate was 6.3 % (11/175). No significant difference was detected in terms of periprocedural complications between two groups (p = 0.643). There was statistically significant difference between stent design groups in regard to radiological findings (p = 0.002). Sixteen of open-cell stents and three of closed-cell stents had focal restenosis. One closed-cell stent had diffuse proliferative restenosis and one open-cell stent had total occlusion.ConclusionIn-stent restenosis was more common in open-cell stent group, which have larger free cell area than closed-cell stents. Although our radiologic findings promote us to use closed-cell design if ‘possible’, no difference was detected in terms of clinical outcomes.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

The POLARBEAR Cosmic Microwave Background Polarization Experiment

The polarbear cosmic microwave background (CMB) polarization experiment has been observing since early 2012 from its 5,200 m site in the Atacama Desert in Northern Chile. polarbear's measurements will characterize the expected CMB polarization due to gravitational lensing by large scale structure, and search for the possible B-mode polarization signature of inflationary gravitational waves. polarbear's 250 mK focal plane detector array consists of 1,274 polarization-sensitive antenna-coupled bolometers, each with an associated lithographed band-defining filter and contacting dielectric lenslet, an architecture unique in current CMB experiments. The status of the polarbear instrument, its focal plane, and the analysis of its measurements are presented.

CMB polarization↗

The Polarbear-2 and the Simons Array experiments

Here, we present an overview of the design and status of the POLARBEAR-2 and the Simons Array experiments. POLARBEAR- 2 is a Cosmic Microwave Background polarimetry experiment which aims to characterize the arc-minute angular scale B-mode signal from weak gravitational lensing and search for the degree angular scale B-mode signal from inflationary gravitational waves. The receiver has a 365 mm diameter focal plane cooled to 270 milli-Kelvin. The focal plane is filled with 7,588 dichroic lenslet-antenna coupled polarization sensitive Transition Edge Sensor (TES) bolometric pixels that are sensitive to 95 GHz and 150 GHz bands simultaneously. The TES bolometers are read-out by SQUIDs with 40 channel frequency domain multiplexing. Refractive optical elements are made with high purity alumina to achieve high optical throughput. The receiver is designed to achieve noise equivalent temperature of 5.8 µK CMB √s in each frequency band. POLARBEAR-2 will deploy in 2016 in the Atacama desert in Chile. The Simons Array is a project to further increase sensitivity by deploying three POLARBEAR-2 type receivers. The Simons Array will cover 95 GHz, 150 GHz and 220 GHz frequency bands for foreground control. The Simons Array will be able to constrain tensor-to-scalar ratio and sum of neutrino masses to σ(r) = 6×10 $-$3 at r = 0.1 and Σm ν (σ = 1) to 40 meV.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Fabrication of Detector Arrays for the SPT-3G Receiver

The South Pole Telescope third-generation (SPT-3G) receiver was installed during the austral summer of 2016–2017. It is designed to measure the cosmic microwave background across three frequency bands centered at 95, 150, and 220 GHz. The SPT-3G receiver has ten focal plane modules, each with 269 pixels. Each pixel features a broadband sinuous antenna coupled to a niobium microstrip transmission line. In-line filters define the desired band-passes before the signal is coupled to six bolometers with Ti/Au/Ti/Au transition edge sensors (three bands × two polarizations). In total, the SPT-3G receiver is composed of 16,000 detectors, which are read out using a 68 × frequency-domain multiplexing scheme. In this paper, we present the process employed in fabricating the detector arrays.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Error-Correcting Codes for Code-Division Multiplexed TES Detectors

Transition edge sensors (TESs) have proven to be highly sensitive and versatile X-ray spectrometers. Upcoming missions, including Athena X-IFU, will rely on highly multiplexed focal planes where more than 32 TES pixels are read out using a single SQUID amplifier channel. We have implemented an error correction algorithm for code-division multiplexed TES signals that can compensate for potential failures of individual SQUID readout channels and that is both scalable and easily implemented in hardware. We present this algorithm for error correction and show results of laboratory tests to assess algorithm performance at recovering TES channels after a SQUID failure.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

LiteBIRD: A Satellite for the Studies of B-Mode Polarization and Inflation from Cosmic Background Radiation Detection

LiteBIRD is a candidate satellite for a strategic large mission of JAXA. With its expected launch in the middle of the 2020s with a H 3 rocket, LiteBIRD plans to map the polarization of the cosmic microwave background radiation over the full sky with unprecedented precision. The full success of LiteBIRD is to achieve δr<0.001, where δr is the total error on the tensor-to-scalar ratio r. The required angular coverage corresponds to 2 ≤ ℓ ≤ 00 , where ℓ is the multipole moment. This allows us to test well-motivated cosmic inflation models. Full-sky surveys for 3 years at a Lagrangian point L2 will be carried out for 15 frequency bands between 34 and 448 GHz with two telescopes to achieve the total sensitivity of 2.5 μ K arcmin with a typical angular resolution of 0.5° at 150 GHz. Each telescope is equipped with a half-wave plate system for polarization signal modulation and a focal plane filled with polarization-sensitive TES bolometers. A cryogenic system provides a 100 mK base temperature for the focal planes and 2 K and 5 K stages for optical components.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

On the Morse Index for Geodesic Lines on Smooth Surfaces Embedded in ℝ{sup 3}

The paper is devoted to the calculation of the Morse index on geodesic lines upon smooth surfaces embedded into the 3D Euclidean space. The interest in this theme is created by the fact that the wave field composed of the surface waves slides along the boundaries guided by the geodesic lines, which, generally speaking, give birth to numerous caustics. The same circumstance takes place in problems of the short-wave diffraction by 3D bodies in the shadowed part of the surface of the body, where the creeping waves arise. Two types of geodesic flows are considered upon the surface when they are generated by a point source and by an initial wave front, for instance, by the light-shadow boundary in the short-wave diffraction by a smooth convex body. The position of the points where geodesic lines meet caustics, i.e., focal points, is found and it is proved that all focal points are simple (not multiple) irrespective of the geometric structure of the caustics arisen. The mathematical techniques in use are based on the complexification of the geometrical spreading problem for a geodesics/rays tube.

97 MATHEMATICS AND COMPUTING↗

Numerical analysis of temperature and stress fields in hybrid indium antimonide arrays detector with laser irradiation

Thermal-stress effects are the major cause of failure in infrared focal-plane arrays detector, during laser irradiation. Based on the established three-dimensional structural model of hybrid indium antimonide infrared focal-plane arrays, the temperature and stress fields of hybrid indium antimonide detectors irradiated by 1.064-μm Gauss pulsed laser are studied, considering the temperature-dependent material parameters. The results indicate that the temperature increase and thermal stress effects are different, in each layer. Especially in indium antimonide chip, which is the uppermost layer of the indium antimonide detector that directly absorbs laser energy, the temperature shows not a smooth decrease as laser intensity from centre to outside, but a concentric-ringed ripple decrease with discontinuous high temperature extremum areas; which induces its own unique stress distributions: during the laser irradiation region, the thermal stress in areas above indium bumps is much lower than that in areas above underfill, but the stress distribution outside the laser irradiation region is exactly the opposite. The temperature and stress distribution in other materials are also different from that in indium antimonide chip. The main reason is that each material has different thermal properties, especially indium bump and underfill, which are alternative distribution in middle layers, have quite different thermal parameters. All these make the temperature and stress distribution in each layer having own characteristics. In addition, the change trend of the maximum temperature and stress in each layer in accordance with the laser pulse number are also studied. The maximum stress as well as temperature always occurs in the indium antimonide chip.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Five Micron High Resolution MALDI Mass Spectrometry Imaging with Simple, Interchangeable, Multi-Resolution Optical System

High-spatial resolution mass spectrometry imaging (MSI) is crucial for the mapping of chemical distributions at the cellular and subcellular level. In this work, we improved our previous laser optical system for matrix-assisted laser desorption ionization (MALDI)-MSI, from ~9 μm practical laser spot size to a practical laser spot size of ~4 μm, thereby allowing for 5 μm resolution imaging without oversampling. This is accomplished through a combination of spatial filtering, beam expansion, and reduction of the final focal length. Most importantly, the new laser optics system allows for simple modification of the spot size solely through the interchanging of the beam expander component. Using 10×, 5×, and no beam expander, we could routinely change between ~4, ~7, and ~45 μm laser spot size, in less than 5 min. We applied this multi-resolution MALDI-MSI system to a single maize root tissue section with three different spatial resolutions of 5, 10, and 50 μm and compared the differences in imaging quality and signal sensitivity. We also demonstrated the difference in depth of focus between the optical systems with 10× and 5× beam expanders. .

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Using time reversal with long duration broadband noise signals to achieve high amplitude and a desired spectrum at a target location

Time Reversal (TR) is a signal processing technique that can be used to focus acoustic waves to a specific location in space, with most applications aiming to create an impulsive focus. Here, this study instead aims to focus long-duration noise signals using TR. This paper seeks to generate higher amplitude noise at a desired location over an existing method of broadcasting equalized noise. Additionally, this paper explores various characteristics associated with focusing long duration noise using TR. The dependence of the focal amplitude on the duration of the focused signal is explored as well as the implications of using multiple sources when focusing noise. The focal amplitude decreases with longer duration and then levels off when the duration exceeds a few seconds. Coherent addition of focused noise is observed if all loudspeakers have coherent noise signals convolved with their reversed impulse responses. Lastly, focusing noise with a desired spectrum is explored.

42 ENGINEERING↗