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At least 811 records · Page 45

Cyanobacterial circadian regulation enhances bioproduction under subjective nighttime through rewiring of carbon partitioning dynamics, redox balance orchestration, and cell cycle modulation

Abstract Background The industrial feasibility of photosynthetic bioproduction using cyanobacterial platforms remains challenging due to insufficient yields, particularly due to competition between product formation and cellular carbon demands across different temporal phases of growth. This study investigates how circadian clock regulation impacts carbon partitioning between storage, growth, and product synthesis in Synechococcus elongatus PCC 7942, and provides insights that suggest potential strategies for enhanced bioproduction. Results After entrainment to light-dark cycles, PCC 7942 cultures transitioned to constant light revealed distinct temporal patterns in sucrose production, exhibiting three-fold higher productivity during subjective night compared to subjective day despite moderate down-regulation of genes from the photosynthetic apparatus. This enhanced productivity coincided with reduced glycogen accumulation and halted cell division at subjective night time, suggesting temporal separation of competing processes. Transcriptome analysis revealed coordinated circadian clock-driven adjustment of the cell cycle and rewiring of energy and carbon metabolism, with over 300 genes showing differential expression across four time points. The subjective night was characterized by altered expression of cell division-related genes and reduced expression of genes involved in glycogen synthesis, while showing upregulation of glycogen degradation pathways, alternative electron flow components, the pentose phosphate pathway, and oxidative decarboxylation of pyruvate. These molecular changes created favorable conditions for product formation through enhanced availability of major sucrose precursors (glucose-1-phosphate and fructose-6-phosphate) and maintained redox balance through multiple mechanisms. Conclusions Our analysis of circadian regulatory rewiring of carbon metabolism and redox balancing suggests two potential approaches that could be developed for improving cyanobacterial bioproduction: leveraging natural circadian rhythms for optimizing cultivation conditions and timing of pathway induction, and engineering strains that mimic circadian-driven metabolic shifts through controlled carbon flux redistribution and redox rebalancing. While these strategies remain to be tested, they could theoretically improve the efficiency of photosynthetic bioproduction by enabling better temporal separation between cell growth, carbon storage accumulation, and product synthesis phases.

59 BASIC BIOLOGICAL SCIENCES↗

A Geo‐Structurally Based Correction Factor for Apparent Dissolution Rates in Fractured Media

Abstract Field measurements of apparent geochemical weathering reaction rates in subsurface fractured porous media are known to deviate from laboratory measurements by multiple orders of magnitude. To date, there is no geologically based explanation for this discrepancy that can be used to predict reaction rates in field systems. Proposed correction factors are typically based on ad hoc characterizations related to geochemical kinetic models. Through a series of high‐fidelity reactive transport simulations of mineral dissolution within explicit 3D discrete fracture networks, we are able to link the geo‐structural attributes with reactive transport observations. We develop a correction factor to linear transition state theory for the prediction of the apparent dissolution rate based on measurable geological properties. The modified rate law shows excellent agreement with numerical simulations, indicating that geological structure could be a primary reason for the discrepancy between laboratory and field observations of apparent dissolution rates in fractured media.

58 GEOSCIENCES↗

Characteristic momentum of Hydro + and a bound on the enhancement of the speed of sound near the QCD critical point

Near the critical point in the QCD phase diagram, hydrodynamics breaks down at a momentum where the frequency of the fastest hydrodynamic mode becomes comparable with the decay rate of the slowest nonhydrodynamic mode. Hydro+ was developed as a framework which extends the range of validity of hydrodynamics beyond that momentum value. This was achieved through coupling the hydrodynamic modes to the slowest nonhydrodynamic mode. In this work, analyzing the spectrum of linear perturbations in Hydro+, we find that a slow mode falls out of equilibrium if its momentum is greater than a characteristic momentum value. That characteristic momentum turns out to be set by the branch points of the dispersion relations. These branch points occur at the critical momenta of so-called spectral curves and are related to the radius of convergence of the derivative expansion. The existence of such a characteristic momentum scale suggests that a particular class of slow modes has no remarkable effect on the flow of the plasma. Based on these results, we show that there is an enhancement of the speed of sound due to the Hydro+ corrections compared to the known thermodynamic corrections near the critical point. This enhancement can not exceed a temperature-dependent upper bound which we derive near the critical point in the QCD phase diagram.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Synthetic Access to a Framework-Stabilized and Fully Sulfided Analogue of an Anderson Polyoxometalate that is Catalytically Competent for Reduction Reactions

Polyoxometalates (POMs) featuring 7, 12, 18, or more redox-accessible transition metal ions are ubiquitous as selective catalysts, especially for oxidation reactions. The corresponding synthetic and catalytic chemistry of stable, discrete, capping-ligand-free polythiometalates (PTMs), which could be especially attractive for reduction reactions, is much less well developed. Among the challenges are the propensity of PTMs to agglomerate and the tendency for agglomeration to block reactant access of catalyst active sites. Nevertheless, the pervasive presence of transition metal sulfur clusters metalloenzymes or cofactors that catalyze reduction reactions and the justifiable proliferation of studies of two-dimensional (2D) metal-chalcogenides as reduction catalysts point to the promise of well-defined and controllable PTMs as reduction catalysts. Here, we report the fabrication of agglomeration-immune, reactant-accessible, capping-ligand-free Co II Mo 6 IV S 24 n– clusters as periodic arrays in a water-stable, hierarchically porous Zr-metal–organic framework (MOF; NU1K) by first installing a disk-like Anderson polyoxometalate, Co III Mo 6 VI O 24 m– , in size-matched micropores where the siting is established via difference electron density (DED) X-ray diffraction (XRD) experiments. Flowing H 2 S, while heating, reduces molybdenum(VI) ions to Mo(IV) and quantitatively replaces oxygen anions with sulfur anions (S 2– , HS – , S 2 2– ). DED maps show that MOF-templated POM-to-PTM conversion leaves clusters individually isolated in open-channel-connected micropores. Importantly, the structure of the immobilized cluster as determined, in part, by X-ray photoelectron spectroscopy (XPS), X-ray absorption fine structure (XAFS) analysis, and pair distribution function (PDF) analysis of total X-ray scattering agrees well with the theoretically simulated structure. PTM@MOF displays both electrocatalytic and photocatalytic competency for hydrogen evolution. Nevertheless, the initially installed PTM appears to be a precatalyst, gaining competency only after the loss of ~3 to 6 sulfurs and exposure to hydride-forming metal ions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Gyrokinetic electrostatic turbulence close to marginality in the Wendelstein 7-X stellarator

The transition from strong (fluidlike) to nearly marginal (Floquet-type) regimes of ion-temperature-gradient (ITG) driven turbulence is studied in the stellarator Wendelstein 7-X by means of numerical simulations. Close to marginality, extended (along magnetic field lines) linearly unstable modes are dominant, even in the presence of kinetic electrons, and provide a drive that results in finite turbulent transport. A total suppression of turbulence above the linear stability threshold of the ITG modes, commonly present in tokamaks and known as the “Dimits shift,” is not observed. We show that this is mostly due to the peculiar radial structure of marginal turbulence, which is more localized than in the fluid case and therefore less likely to be stabilized by shearing flows.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Bohm Criterion of Plasma Sheaths away from Asymptotic Limits

The plasma exit flow speed at the sheath entrance is constrained by the Bohm criterion. The so-called Bohm speed regulates the plasma particle and power exhaust fluxes to the wall, and it is commonly deployed as a boundary condition to exclude the sheath region in quasineutral plasma modeling. In this work, the Bohm criterion analysis is performed in the intermediate plasma regime away from the previously known limiting cases of adiabatic laws and the asymptotic limit of infinitesimal Debye length in a finite-size system, using the transport equations of an anisotropic plasma. The resulting Bohm speed has explicit dependence on local plasma heat flux, temperature isotropization, and thermal force. Comparison with kinetic simulations demonstrates its accuracy over the plasma-sheath transition region in which quasineutrality is weakly perturbed and the Bohm criterion applies.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Revisiting the Terawatt Challenge

Richard E. Smalley, in 2003, defined the Terawatt (TW) Challenge as “Adapting our energy infrastructure to simultaneously address diminishing oil resources and rising levels of atmospheric CO 2 .” Smalley, best known for the discovery of C 60 , for which he received the 1996 Nobel Prize in Chemistry, continued to address the challenges of anthropomorphic and natural global energy flows until he passed away in 2005. Smalley challenged the world to transform the energy sector. He envisioned electricity transmitted by high-voltage direct current (DC) lines from massively deployed solar plants in sunny areas and remotely sited nuclear plants. He also envisioned using advanced batteries for local storage of energy. To meet the needs of ~10 people in a world with a dwindling oil supply, Smalley asserted that the world would need to transform its fossil-fuel-driven 14-TW (average power) energy used in 2003 to a largely renewable-energy-driven 30–60 TW (average power) in 2050. This would be possible only if solar-electricity costs could be drastically reduced. The challenges associated with this transition have been called the “Terawatt Challenge.” Fifteen years later, solar-module costs have been reduced by tenfold and annual deployment of solar photovoltaic (PV) modules has grown by a factor of 100,from ~1 gigawatt (GW) in 2004 to ~100 GW in 2018, with a total of 500 GW installed worldwide, producing 2% of the planet’s electricity. As global installed solar generating capacity approaches1 TW, we revisit Smalley’s TW challenge to identify what has changed and quantify the TW Challenge for a baseline scenario and for two scenarios designed as upper and lower bounds determined by the degree we implement electrification and storage. In this paper, we show that the energy choices we make today will dramatically affect the magnitude of future global energy requirements.

SOLAR ENERGY↗

The Reductive Leaching of Chalcopyrite by Chromium(II) Chloride for the Rapid and Complete Extraction of Copper

A hydrometallurgical process is developed to lower the costs of copper production and thereby sustain the use of copper throughout the global transition to renewable energy technologies. The unique feature of the hydrometallurgical process is the reductive treatment of chalcopyrite, which is in contrast to the oxidative treatment more commonly pursued in the literature. Chalcopyrite reduction by chromium(II) ion is described for the first time and superior kinetics are shown. At high concentrate loadings of 39, 78, and 117 gL –1 , chalcopyrite reacted completely within minutes at room temperature and pressure. The XRD, SEM-EDS, and XPS measurements indicate that chalcopyrite reacts to form copper(I) chloride (CuCl). After the reductive treatment, the mineral products are leached by iron(III) sulfate to demonstrate the complete extraction of copper. The chromium(II) ion may be regenerated by an electrolysis unit inspired by an iron chromium flow battery in a practical industrial process.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Mode Specificity in the OH + HO 2 → H 2 O + O 2 Reaction: Enhancement of Reactivity by Exciting a Spectator Mode

A reaction usually involves a few active modes while the other modes are largely preserved throughout the reaction as spectators. Excitation of an active mode is expected to promote the reaction, but depositing energy in a spectator mode typically has no effect, because of the differing ability for energy flow to the reaction coordinate. Here, we report a surprising case of mode specificity in a key radical–radical reaction OH + HO 2 → H 2 O + O 2 , where such canonical expectations fail to hold. Despite its spectator nature, the vibrational excitation of the OH reactant is shown at low collision energies to enhance the reactivity significantly. This unique effect can be attributed to the increased attraction with HO 2 due to the larger dipole of the stretched OH. At low collision energies, the stronger attraction increases the chance of capturing the reactants to form a hydrogen-bonded complex, thus of passing through the submerged barrier. The novel mechanism differs from the conventional vibrational enhancement via coupling to the reaction coordinate at the transition state, enriching our understanding of mode specificity in chemistry.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Radiative divertor detachment and impurity transport with nitrogen and neon seeding in KSTAR H-mode plasmas

Achieving core-edge compatible divertor detachment is a critical requirement for stable operation in future fusion devices. This study compares nitrogen and neon seeding in KSTAR H-mode plasmas with carbon walls, combining experiments and SOLPS-ITER modelling to evaluate their radiative dissipation and core-edge compatibility. Experimentally, N seeding achieved stronger divertor detachment, with larger reductions in target particle and heat fluxes, a higher divertor radiation fraction, and a lower core radiation fraction than Ne. In contrast, Ne seeding triggered a significant rise in core radiation followed by H–L back transitions, limiting the maximum total radiated power fraction to roughly half that of N. SOLPS-ITER simulations reproduced the experimental trends and revealed that the better core-edge compatibility of N arises from its higher divertor retention in addition to its higher cooling factor. The relative positions of the stagnation points of impurity poloidal velocity and ionization sources did not explain the different divertor compression. Instead, in the present modelling, the higher impurity parallel particle flux, resulting from the higher parallel impurity velocity, explains the stronger nitrogen impurity compression in the divertor region. The parallel temperature distribution with N was more favourable for achieving higher impurity parallel velocity than with Ne, because the impurity velocity is governed by modifications of the main ion flow due to friction and thermal forces, both of which strongly depend on the temperature. Ultimately, this behaviour is attributed to the strongly divertor-localized radiation of N. These results demonstrate that N is more effective than Ne in achieving radiative divertor detachment while maintaining low core contamination in KSTAR, consistent with observations in other present tokamaks.

KSTAR↗

Approach to Quality Assurance for Complex Environmental Modeling - 20407

A strong Quality Assurance (QA) program for complex environmental modeling is essential for regulatory and public acceptance and trust, but it does not have to be onerous. Neptune and Company, Inc. (Neptune) has developed a strong QA program that improves transparency, traceability, reproducibility, and therefore, defensibility and trust. Neptune's QA program has evolved over the past 27 years, transitioning from an ad hoc QA program, to a program that is currently Nuclear Quality Assurance-1 (NQA-1) compliant, and will soon be NQA-1/DOE approved for DOE EM modeling work. In addition, Neptune is a qualified laboratory assessor and qualified auditor for reference materials, a proficiency testing provider, and fully complies with the Environmental Protection Agency (EPA) QA program. Neptune's President and CEO, Kelly Black, was recently named the Chairperson of the International Organization for Standardization (ISO) Technical Committee 69, Application of Statistical Methods. A strong QA program has been developed for Neptune's radiological performance assessment (PA) program. Although pieces of their QA program are currently in development, their current program includes document control using Subversion, issue tracking and work flow tracking using JIRA, and transparency and traceability via a system of 'calc sheets' for documentation of all data analysis and modeling combined with 'check print' documentation of QA checking, and rigorous model testing and configuration control. All work is reviewed by an independent subject matter expert who is not associated with the collection and assembly of information, for an internal peer review. The program is enforced with a handful of Standard Operation Procedures (SOPs), Work Instructions, QA Project Plans (QAPPs), and Quality Management Plans (QMPs) that are updated frequently, with required annual training and acknowledgment. In addition, effective communication of modeling approaches and results to clients and stakeholders are integral to their QA program. Many of their models are built using the GoldSim modeling platform, for which their models are well-known for their level of transparency, documentation, and QA traceability. This level of QA is also applied to their process-level models. Neptune has taken some lessons learned from the extremely rigorous QA program required for the Yucca Mountain Project (YMP), and imposed the YMP requirements of complete traceability, transparency, and reproducibility, but avoided the inflexibility of a QA program that likely contributed to the suspect e-mails in 2005 that resulted in loss of trust in the YMP, and in nuclear waste disposal (and nuclear power) in general. There are far too many examples of loss of public trust due to poor QA that could have been easily avoided with a simple and straight-forward QA program combined with stakeholder engagement. The purpose of this paper is to share features of Neptune's Radiological Performance Assessment program QA program, and some of their QA related lessons learned over the past 27 years of QA for complex environmental modeling. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

The microbiome of a bacterivorous marine choanoflagellate contains a resource-demanding obligate bacterial associate

Abstract Microbial predators such as choanoflagellates are key players in ocean food webs. Choanoflagellates, which are the closest unicellular relatives of animals, consume bacteria and also exhibit marked biological transitions triggered by bacterial compounds, yet their native microbiomes remain uncharacterized. Here we report the discovery of a ubiquitous, uncultured bacterial lineage we name Candidatus Comchoanobacterales ord. nov., related to the human pathogen Coxiella and physically associated with the uncultured marine choanoflagellate Bicosta minor . We analyse complete ‘Comchoano’ genomes acquired after sorting single Bicosta cells, finding signatures of obligate host-dependence, including reduction of pathways encoding glycolysis, membrane components, amino acids and B-vitamins. Comchoano encode the necessary apparatus to import energy and other compounds from the host, proteins for host-cell associations and a type IV secretion system closest to Coxiella’s that is expressed in Pacific Ocean metatranscriptomes. Interactions between choanoflagellates and their microbiota could reshape the direction of energy and resource flow attributed to microbial predators, adding complexity and nuance to marine food webs.

59 BASIC BIOLOGICAL SCIENCES↗

Pulse width dependence of magnetic field generation using laser-powered capacitor coils

Megagauss magnetic fields were generated by a current flowing through a U-shaped coil connecting two parallel copper foils. Two kJ-class lasers at various pulse widths from 2 ns to 9.9 ns passed through holes in the front foil and were focused on the back foil with an intensity of ~1.7×10 16 W/cm 2 . The coil current and resulting magnetic fields were characterized using ultrafast proton radiography, timed at the end of the laser pulses. Additionally, the measurements show that magnetic field strength decays with increasing laser pulse width. A lumped-circuit model was developed and showed consistency with the experimental measurements, demonstrating an ion shorting effect: as the ion current neutralizes the electron current contribution to interplate voltage, the coil current peaks on a timescale close to the ion transit time t i = d/v ion . FLASH simulations of the coil current are performed, and the calculated resistance values are used to constrain ion speed as a function of hot electron temperature.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Addressing tokens dynamic generation, propagation, storage and renewal to secure the GlideinWMS pilot based jobs and system

GlideinWMS has been one of the first middleware in the WLCG community to transition from X.509 to support also tokens. The first step was to get from the prototype in 2019 to using tokens in production in 2022. This paper will present the challenges introduced by the wider adoption of tokens and the evolution plans for securing the pilot infrastructure of GlideinWMS and supporting the new requirements. In the last couple of years, the GlideinWMS team supported the migration to tokens of experiments and resources. Inadequate support in the current infrastructure, more stringent requirements, and the higher spatial and temporal granularity forced GlideinWMS to revisit once more how credentials are generated, used, and propagated. The new credential modules have been designed to be used in multiple systems (GWMS, HC) and use a model where credentials have type, purpose, and different flows. Credentials are dynamically generated in order to customize the duration and limit the scope to the targeted resource. This allows to enforce the least privilege principle. Finally, we also considered adding credential storage, renewal, and invalidation mechanisms within the GlideinWMS infrastructure to serve better the experiments’ needs.

Mambelli, Marco↗

Addressing tokens dynamic generation, propagation, storage and renewal to secure the GlideinWMS pilot based jobs and system

GlideinWMS has been one of the first middleware in the WLCG community to transition from X.509 to support also tokens. The first step was to get from the prototype in 2019 to using tokens in production in 2022. This paper will present the challenges introduced by the wider adoption of tokens and the evolution plans for securing the pilot infrastructure of GlideinWMS and supporting the new requirements. In the last couple of years, the GlideinWMS team supported the migration of experiments and resources to tokens. Inadequate support in the current infrastructure, more stringent requirements, and the higher spatial and temporal granularity forced GlideinWMS to revisit once more how credentials are generated, used, and propagated. The new credential modules have been designed to be used in multiple systems (GlideinWMS, HEPCloud) and use a model where credentials have type, purpose, and different flows. Credentials are dynamically generated in order to customize the duration and limit the scope to the targeted resource. This allows to enforce the least privilege principle. Finally, we also considered adding credential storage, renewal, and invalidation mechanisms within the GlideinWMS infrastructure to better serve the experiments' needs.

Coimbra, Bruno Moreira [Fermilab] (ORCID:000900022↗

Gravitational Waves as a Source of Large-Scale White Noise: New Constraints

A stochastic gravitational wave (GW) background sources a shear in the flow of cosmic fluid which, through non-linear mode coupling, generates large-scale white noise (LSWN) in the kurvature density field. Building on the LSWN framework of our previous work, we derive the amplitude of this GW-induced LSWN and translate the observational non-detection of LSWN into bounds on the production redshift and density of gravity waves. In particular, a minimal constraint on gravity waves with $z=0$ density parameter $Ω_\mathrm{GW0}^*$ in frequency band $f_*$ generated at redshift $z_*$ must satisfy ${z_*}^2\,Ω_\mathrm{GW0}^*<5\times10^7\,(f_*/\mathrm{nHz})^{3/2}$. This, for example, precludes the gravity waves recently detected by pulsar timing arrays \cite{NANOGrav:2023hvm} from being present before $z_*\sim10^8$, long after the quark hadron phase transition. While orders of magnitude stronger than other constraints on gravity waves, this is a minimal LSWN constraint as realistic modeling of early universe gravity wave production, including the granularity of the gravity-wave sources and the LSWN produced by the associated acoustic waves would probably tighten this constraint by orders of magnitude.

Barenboim, Gabriela [Valencia U., IFIC; Valencia U↗

Scattering strings off quantum extremal surfaces

We consider a Hayden & Preskill like setup for both maximally chaotic and sub-maximally chaotic quantum field theories. We act on the vacuum with an operator in a Rindler like wedge R and transfer a small subregion I of R to the other wedge. The chaotic scrambling dynamics of the QFT Rindler time evolution reveals the information in the other wedge. The holographic dual of this process involves a particle excitation falling into the bulk and crossing into the entanglement wedge of the complement to r = R\I. With the goal of studying the locality of the emergent holographic theory we compute various quantum information measures on the boundary that tell us when the particle has entered this entanglement wedge. In a maximally chaotic theory, these measures indicate a sharp transition where the particle enters the wedge exactly when the insertion is null separated from the quantum extremal surface for r. For sub-maximally chaotic theories, we find a smoothed crossover at a delayed time given in terms of the smaller Lyapunov exponent and dependent on the time-smearing scale of the probe excitation. The information quantities that we consider include the full vacuum modular energy R\I as well as the fidelity between the state with the particle and the state without. Along the way, we find a new explicit formula for the modular Hamiltonian of two intervals in an arbitrary 1+1 dimensional CFT to leading order in the small cross ratio limit. We also give an explicit calculation of the Regge limit of the modular flowed chaos correlator and find examples which do not saturate the modular chaos bound. Finally, we discuss the extent to which our results reveal properties of the target of the probe excitation as a “stringy quantum extremal surface” or simply quantify the probe itself thus giving a new approach to studying the notion of longitudinal string spreading.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗