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At least 811 records · Page 45

From powerhouse to processing plant: conserved roles of mitochondrial outer membrane proteins in tRNA splicing

The mitochondrial cytoplasmic surface serves as a processing site for numerous RNAs from budding yeast to metazoans. We report that budding yeast mitochondrial outer membrane (MOM) proteins that are subunits of the translocase of the outer mitochondrial membrane (Tom70 and Tom 22) and sorting and assembly machinery (Sam37) are required for efficient pretransfer RNA (pre-tRNA) splicing. Defective pre-tRNA splicing in MOM mutants is due not to loss of respiratory metabolism but instead inefficient targeting/tethering of tRNA splicing endonuclease (SEN) subunits to mitochondria. Schizosaccharomyces pombe SEN subunits also localize to mitochondria, and Tom70 is required for this localization and pre-tRNA splicing. Thus, the role of MOM protein in targeting/tethering SEN subunits to mitochondria has been conserved for >500 million years.

59 BASIC BIOLOGICAL SCIENCES↗

Primordial black holes and their mass spectra: The effects of mergers and accretion within stasis cosmologies

A variety of processes in the very early Universe can give rise to a population of primordial black holes (PBHs) with an extended mass spectrum. For certain mass spectra of this sort, it has been shown that the evaporation of these PBHs into radiation can drive the universe toward an epoch of cosmological stasis which can persist for a significant number of 𝑒-folds of cosmological expansion. However, in general, the initial mass spectrum which characterizes a population of PBHs at the time of production can subsequently be distorted by processes such as mergers and accretion. Here, in this paper, we examine the effects that these processes have on the spectra that lead to a PBH-induced stasis. Within such stasis models, we find that mergers have only a negligible effect on these spectra within the regime of interest for stasis. We likewise find that the effect of accretion is negligible in many cases of interest. However, we find that the effect of accretion on the PBH mass spectrum is non-negligible in situations in which this spectrum is particularly broad. In such situations, the stasis epoch is abridged or, in extreme cases, does not occur at all. Thus accretion plays a nontrivial role in constraining the emergence of stasis within scenarios which lead to extended PBH mass spectra.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Viewpoint: Exorcizing Maxwell’s demon

Here, physicists have been haunted by the idea of Maxwell's demon for almost 150 years. The beast, conjured in a thought experiment by James Clerk Maxwell, sorts particles in a gas according to their speeds, thus transferring heat from the colder, evenly mixed gas to the region containing the hotter, high-speed particles. At first sight, the demon appears to violate the second law of thermodynamics. But the paradox can be resolved by realizing that work must be performed on the demon for it to do its job properly. This description isn’t entirely satisfying, however, as it introduces an external—not necessarily physical—entity to do work on the demon. Jukka Pekola and colleagues of Aalto University in Finland [1] have now exorcised such nonphysical beings by realizing a nanodevice equivalent to a Maxwell's demon (Fig. 1), but one whose operation doesn’t depend on an external entity. This so-called autonomous device, also known as an information machine, is completely self-contained. So far, autonomous demons have been a purely theoretical concept; this new experimental system provides a way to test formulations of fundamental axioms of thermodynamics and descriptions of information processing.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Nature and impact of stripe freezing in La 1.67 Sr 0.33 NiO 4

La 1.67 Sr 0.33 NiO 4 develops charge and spin stripe orders at temperatures of roughly 200 K, with modulation wave vectors that are temperature independent. Here, various probes of spin and charge response have provided independent evidence for some sort of change below ~50 K. In combination with a new set of neutron scattering measurements, we propose a unified interpretation of all of these observations in terms of a freezing of Ni-centered charges stripes, together with a glassy ordering of the spin stripes that shows up in neutron scattering as a slight rotation of the average spin direction.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Multigap electron-phonon superconductivity in the quasi-one-dimensional pnictide K 2 Mo 3 As 3

In this work, we show, using density functional calculations, that quasi-one-dimensional K 2 Mo 3 As 3 , which is closely related to K 2 Cr 3 As 3 and has very similar superconducting properties, is not close to magnetism and has conventional s wave electron-phonon superconductivity. This superconductivity is of multigap character due to different coupling on different Fermi surface sheets. This is discussed in relation to the properties of this family of quasi-one-dimensional pnictide superconductors. The results show that this family of superconductors provides a unique opportunity for studying the interplay of spin fluctuations and electron-phonon superconductivity in transition metal pnictides, and offer a path for sorting out the different proposed superconducting scenarios in this fascinating family of pnictide superconductors.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Shape and flow fluctuations in ultracentral Pb + Pb collisions at the energies available at the CERN Large Hadron Collider

In ultracentral heavy-ion collisions, anisotropic hydrodynamic flow is generated by density fluctuations in the initial state rather than by geometric overlap effects. For a given centrality class, the initial fluctuation spectrum is sensitive to the method chosen for binning the events into centrality classes. We show that sorting events by total initial entropy or by total final multiplicity yields event classes with equivalent statistical fluctuation properties, in spite of viscous entropy production during the fireball evolution. With this initial entropy-based centrality definition we generate several classes of ultracentral Pb + Pb collisions at CERN Large Hadron Collider energies and evolve the events using viscous hydrodynamics with nonzero shear but vanishing bulk viscosity. Comparing the predicted anisotropic flow coefficients for charged hadrons with CMS data we find that both the Monte Carlo Glauber (MC-Glb) and Monte Carlo Kharzeev-Levin-Nardi (MC-KLN) models produce initial fluctuation spectra that are incompatible with the measured final anisotropic flow power spectrum, for any choice of the specific shear viscosity. In spite of this failure, we show that the hydrodynamic model can qualitatively explain, in terms of event-by-event fluctuations of the anisotropic flow coefficients and flow angles, the breaking of flow factorization for elliptic, triangular, and quadrangular flow measured by the CMS experiment. For elliptic flow, this factorization breaking is large in ultracentral collisions. Finally, we conclude that the bulk of the experimentally observed flow factorization breaking effects are qualitatively explained by hydrodynamic evolution of initial-state fluctuations, but that their quantitative description requires a better understanding of the initial fluctuation spectrum.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Natural anomaly mediation from the landscape with implications for LHC SUSY searches

Supersymmetric models with the anomaly-mediated supersymmetry (SUSY) breaking (AMSB) form for soft SUSY breaking terms arise in two different settings: (1) extra-dimensional models where SUSY breaking occurs in a sequestered sector, and (2) 4 − d models with dynamical SUSY breaking in a hidden sector where scalars gain masses of order the gravitino mass m 3 / 2 , but gaugino masses and trilinear soft terms are assumed to be of the AMSB form. Both models run into serious conflicts with (1) LHC sparticle and Higgs mass constraints, (2) constraints from winolike weakly interacting massive particle dark matter searches, and (3) bounds from naturalness. These conflicts may be avoided by introducing minor changes to the underlying phenomenological models consisting of nonuniversal bulk scalar Higgs masses and A terms, providing a setting for natural anomaly mediation (nAMSB). In nAMSB, the wino is still expected to be the lightest of the gauginos, but the Higgsinos are expected to be the lightest electroweakinos (EWinos) in accord with naturalness. We examine what sorts of spectra are expected to emerge when nAMSB arises from a string landscape setting: While model 2 can only be natural for a Higgs mass m h ≲ 123 GeV , model 1 can accommodate naturalness along with m h ∼ 125 GeV while still respecting LHC bounds on sparticle masses. We explore the LHC phenomenology of nAMSB models where we find that for Higgsino pair production, typically larger dilepton mass gaps arise from the soft dilepton-plus-jets signature than in models with gaugino mass unification. For wino-pair production, the higher m 3 / 2 portion of nAMSB parameter space is excluded by recent LHC bounds from gaugino pair production searches. We characterize the dominant LHC signatures arising from the remaining lower m 3 / 2 ∼ 90 – 200 TeV range of parameter space, which should be fully testable at high-luminosity LHC via EWino pair production searches. Published by the American Physical Society 2024

Astronomy & Astrophysics↗

Fuzzy gauge theory for quantum computers

Continuous gauge theories, because of their bosonic degrees of freedom, have an infinite-dimensional local Hilbert space. Encoding these degrees of freedom on qubit-based hardware demands some sort of “qubitization” scheme, where one approximates the behavior of a theory while using only finitely many degrees of freedom. We propose a novel qubitization strategy for gauge theories, called “fuzzy gauge theory,” building on the success of the fuzzy σ -model in earlier work. We provide arguments that the fuzzy gauge theory lies in the same universality class as regular gauge theory, in which case its use would obviate the need of any further limit besides the usual spatial continuum limit. Furthermore, we demonstrate that these models are relatively resource-efficient for quantum simulations. Published by the American Physical Society 2024

Astronomy & Astrophysics↗

Multiscale polar theory of microtubule and motor-protein assemblies

Microtubules and motor proteins are building blocks of self-organized subcellular biological structures such as the mitotic spindle and the centrosomal microtubule array. These same ingredients can form new “bioactive” liquid-crystalline fluids that are intrinsically out of equilibrium and which display complex flows and defect dynamics. It is not yet well understood how microscopic activity, which involves polarity-dependent interactions between motor proteins and microtubules, yields such larger-scale dynamical structures. In our multiscale theory, Brownian dynamics simulations of polar microtubule ensembles driven by cross-linking motors allow us to study microscopic organization and stresses. Polarity sorting and cross-link relaxation emerge as two polar-specific sources of active destabilizing stress. On larger length scales, our continuum Doi-Onsager theory captures the hydrodynamic flows generated by polarity-dependent active stresses. Finally, the results connect local polar structure to flow structures and defect dynamics.

36 MATERIALS SCIENCE↗

Redundantly Amplified Information Suppresses Quantum Correlations in Many-Body Systems

We establish bounds on quantum correlations in many-body systems. They reveal what sort of information about a quantum system can be simultaneously recorded in different parts of its environment. Specifically, independent agents who monitor environment fragments can eavesdrop only on amplified and redundantly disseminated—hence, effectively classical—information about the decoherence-resistant pointer observable. We also show that the emergence of classical objectivity is signaled by a distinctive scaling of the conditional mutual information, bypassing hard numerical optimizations. Our results validate the core idea of quantum Darwinism: objective classical reality does not need to be postulated and is not accidental, but rather a compelling emergent feature of quantum theory that otherwise—in the absence of decoherence and amplification—leads to “quantum weirdness.” In particular, a lack of consensus between agents that access environment fragments is bounded by the information deficit, a measure of the incompleteness of the information about the system.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Computational prediction of nanostructured alloys with enhanced thermoelectric properties

The Materials Genome Initiative calls for a dramatic increase in the rate of materials discovery and development. High-throughput (HT) calculations can advance this goal by efficiently screening a large search space for candidate materials to study in more depth. Thermoelectric materials (TEs) are prime candidates for such HT calculations: The properties required to achieve good performance are known, but systematic ways of improving these properties are scarce. Furthermore, known HT methods for TEs only address bulk crystals—screening realistic multicomponent alloys for their TE properties has yet to be accomplished. In this paper, we use a density functional theory driven HT screening-and-sorting procedure to search for new multicomponent bulk-nanostructured thermoelectric materials. We make maximum use of minimal calculations to obtain eight descriptors of the thermodynamics and TE performance of five-element semiconductor alloy systems from combinations of ternary additions in binary compounds. We use these descriptors to reduce a search space of 29 700 five-element systems to a set of 130 candidates. Lastly, we screen these candidates using TE descriptors to identify several existing high-performance thermoelectrics as well as promising new material systems awaiting further experimental verification.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Overcoming photobleaching in imaging of single barium atoms in a solid xenon matrix

Neutrinoless double beta decay is one of the most sensitive probes for new physics beyond the Standard Model of particle physics. One of the isotopes under investigation is 136 Xe, which would double beta decay into 136 Ba. Detecting the single 136 Ba daughter provides a sort of ultimate tool in the discrimination against backgrounds. Previous work demonstrated the ability to perform single atom imaging of Ba atoms in a single-vacancy site of a solid xenon matrix. In this paper, the effort to identify signal from individual barium atoms is extended to Ba atoms in a hexa-vacancy site in the matrix and is achieved despite increased photobleaching in this site. Abrupt fluorescence turn-off of a single Ba atom is also observed. Significant recovery of fluorescence signal lost through photobleaching is demonstrated upon annealing of Ba deposits in the Xe ice. Following annealing, it is observed that Ba atoms in the hexa-vacancy site exhibit antibleaching while Ba atoms in the tetra-vacancy site exhibit bleaching. This may be evidence for a matrix site transfer upon laser excitation. Our findings offer a path of continued research toward tagging of Ba daughters in all significant sites in solid xenon.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Stripe and bubble ratchets on asymmetric substrates

We show that various nonmonotonic ratchet effects can arise when mesophase pattern-forming systems, which exhibit anisotropic crystal, stripe, and bubble regimes, are coupled to one-dimensional asymmetric substrates under ac driving. The patterns emerge in the absence of a substrate when the ratio of attraction to repulsion is varied for particles with competing short-range attraction and long-range repulsion potentials. In the presence of the substrate, we find that the ratchet efficiency varies nonmonotonically with increasing attraction, depending upon how well the mesophase morphology matches the substrate spacing and periodicity. For strong repulsion, there is a weak but finite ratchet effect, while at intermediate attraction, there is a robust ratchet effect in which the system forms stripes aligned with the substrate symmetry direction. For strong attraction, large bubbles appear that have weak or no ratchet effects when the bubble width exceeds the substrate lattice spacing, causing the bubble to be only weakly coupled to the substrate. For very strong attraction, small bubbles form and undergo a strong ratchet effect with an efficiency that oscillates as a function of ac drive amplitude. Although the small bubble regime is a strongly correlated regime in which each bubble contains many particles, the system behaves as if it is in a single-particle regime since the bubble width is much smaller than the substrate lattice spacing. We map out the different rectification phases as a function of the pattern morphology, substrate strength, and ac drive amplitude. The pronounced ratchet effects that we observe in some regimes can be exploited for pattern sorting in hard and soft matter systems. Published by the American Physical Society 2024

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Wave-packet manipulation of He Rydberg states by a seeded free-electron laser

We report a two-dimensional pump-control-probe spectroscopic study of the dynamics of singly excited He Rydberg-state wave packets with a seeded extreme ultraviolet (XUV) free-electron laser (FEL) source. A pair of coherent XUV pulses, defined by their coarse time separation and relative phase, created and manipulated the wave packets. The He atoms were postionized by infrared (IR) pulses, and the ion yield was measured as a function of XUV phase and IR arrival time. We tagged and sorted the relative phase of the XUV pulse pair on a single-shot basis by fitting each FEL spectrum with a suitable function that accounts for nonidealities of the XUV pulse pairs, associated with the seeding process; more generally, the fit returns the time-dependent electric field of the FEL spectra. The experimental two-dimensional maps of ion yields, measured as a function of IR (probe) delay and of XUV (pump-control) phase, were compared with the solution of the first-order time-dependent Schrödinger equation for this field. Despite the fact that the experimental conditions imply strong excitation, beyond the approximations of first-order perturbation theory, the simulated map satisfactorily reproduces the experimental one for temporally well-separated pulses. We show that by selecting data at appropriate values of pump-control phase, we enhance or suppress the amplitude of chosen wave-packet components consisting of two or more Rydberg states. When the temporal overlap of the pulse pair cannot be neglected, the phase reconstruction is underdetermined, and we provide a simplified comparison between data and simulations. Published by the American Physical Society 2024

Dumergue, Mathieu (ORCID:0000000236984406)↗

Tuning of altermagnetism by strain

For all collinear altermagnets, we sort out piezomagnetic free-energy invariants allowed in the nonrelativistic limit and relativistic piezomagnetic invariants bilinear in the Néel vector $\mathbf{L}$ and magnetization $\mathbf{M}$, which include strain-induced Dzyaloshinskii-Moriya interaction. The symmetry-allowed responses are fully determined by the nonrelativistic spin Laue group. In the nonrelativistic limit, two distinct mechanisms are discussed: the band-filling mechanism, which exists in metals and is illustrated using the simple two-dimensional Lieb lattice model, and the temperature-dependent exchange-driven mechanism, which is illustrated using first-principles calculations for transition-metal fluorides. The leading second-order nonrelativistic term in the strain-induced magnetization is also obtained for CrSb. Piezomagnetism due to the strain-induced Dzyaloshinskii-Moriya interaction is calculated from first principles for transition-metal fluorides, MnTe, and CrSb. Finally, we discuss triplet superconducting correlations supported by altermagnets and protected by inversion rather than time-reversal symmetry. We apply the nonrelativistic classification of Cooper pairs to describe the interplay between strain and superconductivity in the two-dimensional Lieb lattice and in bulk rutile structures. Here, we show that triplet superconductivity is, on average, unitary in an unstrained altermagnet, but becomes non-unitary under piezomagnetically active strain.

FOS: Physical sciences↗

Chloroplast Outer Membrane β-Barrel Proteins Use Components of the General Import Apparatus

Chloroplasts evolved from a cyanobacterial endosymbiont that resided within a eukaryotic cell. Due to their prokaryotic heritage, chloroplast outer membranes contain transmembrane β-barrel proteins. While most chloroplast proteins use N-terminal transit peptides to enter the chloroplasts through the translocons at the outer and inner chloroplast envelope membranes (TOC/TIC), only one β-barrel protein, Toc75, has been shown to use this pathway. The route other β-barrel proteins use has remained unresolved. Here we use in vitro pea chloroplast import assays and transient expression in Nicotiana benthamiana to address this. We show that a paralog of Toc75, OEP80, also uses a transit peptide but has a distinct envelope sorting signal. Our results additionally indicate that β-barrel's that do not use transit peptides also enter the chloroplasts using components of the general import pathway.

59 BASIC BIOLOGICAL SCIENCES↗

Microcrystal manipulation with laser tweezers

Optical trapping has successfully been applied to select and mount microcrystals for subsequent X-ray diffraction experiments. X-ray crystallography is the method of choice to deduce atomic resolution structural information from macromolecules. In recent years, significant investments in structural genomics initiatives have been undertaken to automate all steps in X-ray crystallography from protein expression to structure solution. Robotic systems are widely used to prepare crystallization screens and change samples on synchrotron beamlines for macromolecular crystallography. The only remaining manual handling step is the transfer of the crystal from the mother liquor onto the crystal holder. Manual mounting is relatively straightforward for crystals with dimensions of >25 µm; however, this step is nontrivial for smaller crystals. The mounting of microcrystals is becoming increasingly important as advances in microfocus synchrotron beamlines now allow data collection from crystals with dimensions of only a few micrometres. To make optimal usage of these beamlines, new approaches have to be taken to facilitate and automate this last manual handling step. Optical tweezers, which are routinely used for the manipulation of micrometre-sized objects, have successfully been applied to sort and mount macromolecular crystals on newly designed crystal holders. Diffraction data from CPV type 1 polyhedrin microcrystals mounted with laser tweezers are presented.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Cheetah : software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data

The emerging technique of serial X-ray diffraction, in which diffraction data are collected from samples flowing across a pulsed X-ray source at repetition rates of 100 Hz or higher, has necessitated the development of new software in order to handle the large data volumes produced. Sorting of data according to different criteria and rapid filtering of events to retain only diffraction patterns of interest results in significant reductions in data volume, thereby simplifying subsequent data analysis and management tasks. Meanwhile the generation of reduced data in the form of virtual powder patterns, radial stacks, histograms and other meta data creates data set summaries for analysis and overall experiment evaluation. Rapid data reduction early in the analysis pipeline is proving to be an essential first step in serial imaging experiments, prompting the authors to make the tool described in this article available to the general community. Originally developed for experiments at X-ray free-electron lasers, the software is based on a modular facility-independent library to promote portability between different experiments and is available under version 3 or later of the GNU General Public License.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗