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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

The Gene Ontology Resource: 20 years and still GOing strong

The Gene Ontology resource (GO; http://geneontology.org) provides structured, computable knowledge regarding the functions of genes and gene products. Founded in 1998, GO has become widely adopted in the life sciences, and its contents are under continual improvement, both in quantity and in quality. Here, we report the major developments of the GO resource during the past two years. Each monthly release of the GO resource is now packaged and given a unique identifier (DOI), enabling GO-based analyses on a specific release to be reproduced in the future. The molecular function ontology has been refactored to better represent the overall activities of gene products, with a focus on transcription regulator activities. Quality assurance efforts have been ramped up to address potentially out-of-date or inaccurate annotations. New evidence codes for high-throughput experiments now enable users to filter out annotations obtained from these sources. GO-CAM, a new framework for representing gene function that is more expressive than standard GO annotations, has been released, and users can now explore the growing repository of these models. We also provide the 'GO ribbon' widget for visualizing GO annotations to a gene; the widget can be easily embedded in any web page.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

The PathoSystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious Diseases (https://www.patricbrc.org). PATRIC supports bioinformatic analyses of all bacteria with a special emphasis on pathogens, offering a rich comparative analysis environment that provides users with access to over 250 000 uniformly annotated and publicly available genomes with curated metadata. PATRIC offers web-based visualization and comparative analysis tools, a private workspace in which users can analyze their own data in the context of the public collections, services that streamline complex bioinformatic workflows and command-line tools for bulk data analysis. Over the past several years, as genomic and other omics-related experiments have become more cost-effective and widespread, we have observed considerable growth in the usage of and demand for easy-to-use, publicly available bioinformatic tools and services. Here we report the recent updates to the PATRIC resource, including new web-based comparative analysis tools, eight new services and the release of a command-line interface to access, query and analyze data.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Climatic imprint on interfacially-controlled platinum-palladium resources

Abstract Iron oxide-rich laterites, soils, and regolith formed from the weathering of ultramafic rocks represent untapped unconventional resources for the critical minerals platinum and palladium, but the fundamental surficial geochemistry of these elements remains poorly understood. Depletion of Pd relative to Pt occurs in some weathering zones in semi-arid climates. The accepted model attributes this platinum-palladium chemical fractionation to preferential complexation of Pd by dissolved chloride. However, similar fractionation is not observed in laterites of humid equatorial regions despite substantial wet deposition of chloride. The established mechanistic model for Pt and Pd behavior during weathering thus inaccurately predicts the distribution of these critical minerals in many settings, hindering global resource assessment. We show through mineral-fluid partitioning experiments coupled to element-specific spectroscopy that this canonical explanation for platinum-palladium fractionation is invalid: chloride complexation does not differentially mobilize Pd versus Pt. Instead, mineral-specific interfacial reactions control Pd and Pt accumulation. Modeling of platinum-palladium fractionation in representative weathering zone profiles demonstrates sub-equal retention in goethite-rich settings and Pd depletion in hematite-rich zones, accurately predicting trends observed in soils and laterites. Iron oxide mineralogy, reflecting modern and past regional climate conditions, is likely the primary determinant of Pt and Pd endowment in weathering zone resources. This new model for Pt and Pd mobilization and accumulation behavior provides a mechanistic foundation for exploration and recovery of platinum group elements from novel ultramafic regolith deposits.

58 GEOSCIENCES↗
DOE OSTI2024

Incompatibility as a Resource for Programmable Quantum Instruments

Quantum instruments represent the most general type of quantum measurement, as they incorporate processes with both classical and quantum outputs. In many scenarios, it may be desirable to have some “on-demand” device that is capable of implementing one of many possible instruments whenever the experimenter desires. We refer to such objects as programmable instrument devices (PIDs), and this paper studies PIDs from a resource-theoretic perspective. A physically important class of PIDs are those that do not require quantum memories to implement, and these are naturally “free” in this resource theory. Additionally, these free objects correspond precisely to the class of unsteerable channel assemblages in the study of channel steering. The traditional notion of measurement incompatibility emerges as a resource in this theory since any PID controlling an incompatible family of instruments requires a quantum memory to build. We identify an incompatibility preorder between PIDs based on whether one can be transformed into another using processes that do not require additional quantum memories. Necessary and sufficient conditions are derived for when such transformations are possible based on how well certain guessing games can be played using a given PID. Ultimately our results provide an operational characterization of incompatibility, and they offer semi-device-independent tests for incompatibility in the most general types of quantum instruments. Published by the American Physical Society 2024

Physics↗
DOE OSTI2025

Interoperable, Inverter - Based Distributed Energy Resources Enable 100% Renewable and Resilient Utility Microgrids

As microgrids transition away from use of conventional generating resources and increasingly rely on renewable resources towards decarbonization goals, it is crucial to evaluate the capability inverter-based resources to provide microgrid stability and resilience. Particularly, microgrids with a high contribution of intermittent solar photo voltaic generation and higher load variability present unique challenges requiring fast voltage and frequency support. At the San Diego Gas & Electric Company(R) (SDG&E(R)) Borrego Springs Microgrid, a battery inverter was upgraded with grid-forming (GFM) capability to serve as island leader, transitioning responsibility away from diesel generators. An interoperable microgrid control scheme was developed, coordinating GFM and grid-following (GFL) inverters. Hardware-in-the-loop (HIL) simulations using relevant power and controller HIL interfaces between real-time simulators and field equipment are being conducted to de-risk field deployment.

battery energy storage↗
DOE OSTI2017

Integrating External Resources with a Task-Based Programming Model

Accessing external resources (e.g., loading input data, checkpointing snapshots, and out-of-core processing) can have a significant impact on the performance of supercomputer applications. However, no existing programming systems for high-performance computing directly manage and optimize these external accesses. As a result, users must explicitly manage external accesses alongside their computation at the application level, which can result in both correctness and performance issues. We address this limitation by introducing Iris, a task-based programming model with semantics for external resources. Iris allows applications to describe their access requirements to external resources and the relationship of those accesses to the computation. Iris incorporates external I/O into a deferred execution model, reschedules external I/O to overlap I/O with computation, and reduces external I/O when possible. We evaluate Iris on three microbenchmarks representative of important workloads in HPC and a full combustion simulation, S3D. We demonstrate that the Iris implementation of S3D reduces the external I/O overhead by up to 20×, compared to the Legion and the Fortran implementations.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

Introduction to the Special Section on Control and Management of Electric Power Systems With High Shares of Inverter-Based Resources

The growing interest in the integration of variable renewable energy (VRE) and distributed energy resources (DER) on both policy and economic grounds is driving the transformation of electric power systems. The significant deployment of VRE and DER can effectively displace the conventional synchronous generator-based power plants that for decades have been the foundation for power system generation and stability in electric power systems. Inverter-based resources (IBRs) introduce a high-level of uncertainty, variability, and complexity into the operation of electric power networks, and the transformation to IBRs raises a wide range of technical questions and operational challenges. The optimal coordination and control of these resources requires greater interoperability and necessitates significant upgrades of grid automation, including real-time monitoring.

distributed power generation↗
DOE OSTI2021

Hybrid Resources: Challenges, Implications, Opportunities, and Innovation

The electric power system has historically been designed to provide reliable energy to loads by using a relatively small number of well-understood generators. The distinction between load, generation, and transmission resources has been quite clear. Most of the responsibility for planning and operating a system - building a highly reliable network from less reliable parts - has been with the system manager, whether that be a utility, a regional market operator, or some similar entity. Given this historical context, many experts were initially perplexed by the rapidly growing popularity of hybrid resources, which combine multiple technologies into a single entity. Rather than depending on a system operator to provide instructions to individual technologies, hybrid resources intentionally take on more operational responsibility by optimizing and scheduling their combined functions. Interconnection queues in many regions reveal a large and growing interest in hybrids, suggesting that project developers and investors see them as providing advantages.

generators↗
DOE OSTI2023

Control of Behind-the-Meter Resources for Enhancing the Resilience of Residential Buildings

There is increased concern about the impacts of frequent power outages, caused primarily by extreme weather conditions. With increasing behind-the-meter resources such as solar photovoltaics (PV), battery energy storage, and controllable loads, these resources - if properly coordinated - can meet critical loads even during an outage. Resilience building controls can coordinate and operate these resources to enhance the resiliency of buildings supporting critical loads for longer duration. In this paper, we present two resilience building controls: rule-based control and model predictive control (MPC). We simulated various scenarios considering different locations, seasons, outage types, and times of outages to evaluate the performance of resilience controls. The results show that MPC-based control can enhance resilience up to 65% compared to rule-based control. Similarly, PV self-consumption and occupant thermal comfort both increase during outages with MPC-based control.

ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATION↗
DOE OSTI2014

Comparing Resource Adequacy Metrics and Their Influence on Capacity Value: Preprint

Traditional probabilistic methods have been used to evaluate resource adequacy. The increasing presence of variable renewable generation in power systems presents a challenge to these methods because, unlike thermal units, variable renewable generation levels change over time because they are driven by meteorological events. Thus, capacity value calculations for these resources are often performed to simple rules of thumb. This paper follows the recommendations of the North American Electric Reliability Corporation?s Integration of Variable Generation Task Force to include variable generation in the calculation of resource adequacy and compares different reliability metrics. Examples are provided using the Western Interconnection footprint under different variable generation penetrations.

17 WIND ENERGY↗
DOE OSTI2018

Coordinative Voltage Control Strategy with Multiple Resources for Distribution Systems of High PV Penetration

This paper presents an optimal voltage control methodology with coordination among different voltage-regulating resources, including controllable loads, distributed energy resources such as energy storage and photovoltaics (PV), and utility voltage-regulating devices such as voltage regulators and capacitors. The proposed methodology could effectively tackle the overvoltage and voltage regulation device distortion problems brought by high penetrations of PV to improve grid operation reliability. A voltage-load sensitivity matrix and voltage-regulator sensitivity matrix are used to deploy the resources along the feeder to achieve the control objectives. Mixed-integer nonlinear programming is used to solve the formulated optimization control problem. The methodology has been tested on the IEEE 123-feeder test system, and the results demonstrate that the proposed approach could improve the voltage profile of distribution system operation.

14 SOLAR ENERGY↗
DOE OSTI2018

Enforcing End-to-end I/O Policies for Scientific Workflows using Software-Defined Storage Resource Enclaves

Data-intensive knowledge discovery requires scientific applications to run concurrently with analytics and visualization codes executing in situ for timely output inspection and knowledge extraction. Consequently, I/O pipelines of scientific workflows can be long and complex because they comprise many stages of analytics across different layers of the I/O stack of high-performance computing systems. Performance limitations at any I/O layer or stage can cause an I/O bottleneck resulting in greater than expected end-to-end I/O latency. In this paper, we present the design and implementation of a novel data management infrastructure called Software-Defined Storage Resource Enclaves (SIREN) at system level to enforce end-to-end policies that dictate an I/O pipeline's performance. SIREN provides an I/O performance interface for users to specify the desired storage resources in the context of in-situ analytics. If suboptimal performance of analytics is caused by an I/O bottleneck when data are transferred between simulations and analytics, schedulers in different layers of the I/O stack automatically provide the guaranteed lower bounds on I/O throughput. Lastly, our experimental results demonstrate that SIREN provides performance isolation among scientific workflows sharing multiple storage servers across two I/O layers (burst buffer and parallel file systems) while maintaining high system scalability and resource utilization.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2018

Dynamic Resource Scheduling in Mobile Edge Cloud with Cloud Radio Access Network

Nowadays, by integrating the cloud radio access network (C-RAN) with the mobile edge cloud computing (MEC) technology, mobile service provider (MSP) can efficiently handle the increasing mobile traffic and enhance the capabilities of mobile devices. But the power consumption has become skyrocketing for MSP and it gravely affects the profit of MSP. Previous work often studied the power consumption in C-RAN and MEC separately while less work had considered the integration of C-RAN with MEC. In this paper, we present an unifying framework for the power-performance tradeoff of MSP by jointly scheduling network resources in C-RAN and computation resources in MEC to maximize the profit of MSP. To achieve this objective, we formulate the resource scheduling issue as a stochastic problem and design a new optimization framework by using an extended Lyapunov technique. Specially, because the standard Lyapunov technique critically assumes that job requests have fixed lengths and can be finished within each decision making interval, it is not suitable for the dynamic situation where the mobile job requests have variable lengths. To solve this problem, we extend the standard Lyapunov technique and design the VariedLen algorithm to make online decisions in consecutive time for job requests with variable lengths. Furthermore, our proposed algorithm can reach time average profit that is close to the optimum with a diminishing gap (1/V) for the MSP while still maintaining strong system stability and low congestion. With extensive simulations based on a real world trace, we demonstrate the efficacy and optimality of our proposed algorithm.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2018

A Model Predictive Control Based Generator Start-Up Optimization Strategy for Restoration With Microgrids as Black-Start Resources

Microgrids (MGs) can operate in an islanded mode and serve as black-start resources for power system restoration (PSR). Here, a model predictive control (MPC) based generator start-up optimization strategy for PSR is proposed utilizing MGs as black-start resources. First, the generator start-up sequence (GSUS) optimization is formulated as a mixed integer linear programming. Then, the uncertainties of MG black-start resources (MBSRs) are modeled by discretizing the probability distribution of the forecast errors, and representative scenarios for MBSRs extracted by formulating the probability mass transportation problem. Third, the generator start-up optimization strategy considering MBSRs is proposed utilizing the MPC technique, in which the optimization objective is to maximize the energy capability of the power systems and minimize the load curtailment of the MGs in each looking-ahead interval. Simulations on the IEEE 118 bus system with MGs and Zhejiang provincial power system in China verify that the introduced strategy for PSR can successfully restore the power system and effectively determine the optimal GSUS.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2018

Data-Driven Pricing Strategy for Demand-Side Resource Aggregators

We consider a utility who seeks to coordinate the energy consumption of multiple demand-side flexible resource aggregators. For the purpose of privacy protection, the utility has no access to the detailed information of loads of resource aggregators. Instead, we assume that the utility can directly observe each aggregator's aggregate energy consumption outcomes. Furthermore, the utility can leverage resource aggregator energy consumption via time-varying electricity price profiles. Based on inverse optimization technique, we propose an estimation method for the utility to infer the energy requirement information of aggregators. Subsequently, we design a data-driven pricing scheme to help the utility achieve system-level control objectives (e.g., minimizing peak demand) by combining hybrid particle swarm optimizer with mutation algorithm and an iterative algorithm. Case studies have demonstrated the effectiveness of the proposed approach against two benchmark pricing strategies-a flat-rate scheme and a time-of-use scheme.

data-driven optimization↗
DOE OSTI2020

Hemiptera phylogenomic resources: Tree‐based orthology prediction and conserved exon identification

Abstract High‐throughput sequencing of transcriptomes and targeted genomic regions are advancing our knowledge of The Tree of Life. Building phylogenies with regions of the genome requires 1‐to‐1 orthologue resources of genes and noncoding loci. One organismal group that has received little attention in this area is the Hemiptera, the fifth largest insect order represented by ~103,590 named species. Here, we present a set of 3,872 Hemiptera 1‐to‐1 orthogroups based on tree‐based orthology inference of eight Hemiptera species with publicly available genome sequences. We also estimate a set of 406 orthologous exons with similar mRNA splice sites that can be used for Sanger sequencing and develop enrichment probes for targeted genome sequencing for phylogenomic inference. We show this novel set of orthologues is informative at the protein, coding sequence and exon molecular levels and provides robust branch support in both gene tree–species tree methods and concatenated sequence phylogenies. In addition, we demonstrate the utility of these loci to resolve relationships in whiteflies, Bemisia tabaci , a large species complex with few phylogenomic resources. Last, we compare our Hemiptera phylogeny with previously published phylogenies and other orthologue databases, while providing suggestions on further improvement to this phylogenomic resource.

Owen, Christopher L.↗
DOE OSTI2020

Time as a microbial resource

Microbes need resources for energy and cellular building material. They also need access to clement conditions with liquid water and a cellular damage rate that is lower than repair. When deprived of resources and clement conditions, microbes often enter some form of dormancy (e.g., by ceasing cell division, slowing metabolic rate, or forming an endospore) until they can grow again. For example, at night, phototrophs wait for the sun to return. In winter, soil microbes wait for warmer temperatures. Microbes that cause diseases like tuberculosis can stay dormant for years, waiting for the cessation of antibiotic or immune system bombardment. But what about longer timescales? Unlike multicellular life, microbes survive in an extremely broad range of conditions and can access an amazing variety of resources to maintain cellular functions in the absence of cell division. This means that they have the potential to be dormant for much longer than a few months or years. There is no theoretical reason microbes cannot survive on maintenance energy for hundreds or thousands of years, or longer, with little to no cell proliferation. Here, given this lack of theoretical constraints on the length of microbial dormancy intervals, two questions arise, (i) is there evidence for the existence of organisms experiencing very long dormancies? And (ii) what could be the advantages of such long wait times?

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Solving the sample size problem for resource selection functions

Abstract Sample size sufficiency is a critical consideration for estimating resource selection functions (RSFs) from GPS‐based animal telemetry. Cited thresholds for sufficiency include a number of captured animals and as many relocations per animal N as possible. These thresholds render many RSF‐based studies misleading if large sample sizes were truly insufficient, or unpublishable if small sample sizes were sufficient but failed to meet reviewer expectations. We provide the first comprehensive solution for RSF sample size by deriving closed‐form mathematical expressions for the number of animals M and the number of relocations per animal N required for model outputs to a given degree of precision. The sample sizes needed depend on just 3 biologically meaningful quantities: habitat selection strength, variation in individual selection and a novel measure of landscape complexity, which we define rigorously. The mathematical expressions are calculable for any environmental dataset at any spatial scale and are applicable to any study involving resource selection (including sessile organisms). We validate our analytical solutions using globally relevant empirical data including 5,678,623 GPS locations from 511 animals from 10 species (omnivores, carnivores and herbivores living in boreal, temperate and tropical forests, montane woodlands, swamps and Arctic tundra). Our analytic expressions show that the required M and N must decline with increasing selection strength and increasing landscape complexity, and this decline is insensitive to the definition of availability used in the analysis. Our results demonstrate that the most biologically relevant effects on the utilization distribution (i.e. those landscape conditions with the greatest absolute magnitude of resource selection) can often be estimated with much fewer than animals. We identify several critical steps in implementing these equations, including (a) a priori selection of expected model coefficients and (b) regular sampling of background (pseudoabsence) data within a given definition of availability. We discuss possible methods to identify a priori expectations for habitat selection coefficients, effects of scale on RSF estimation and caveats for rare species applications. We argue that these equations should be a mandatory component for all future RSF studies.

Street, Garrett M.↗