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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 811 records · Page 45

Modeling the U.S. Western Electric Interconnection to Understand the Consequences of Hydrometeorological Extremes and Options for Risk Mitigation

Electricity grid operators around the world face a dual challenge; withstanding increasingly severe weather and the longer term impacts of climate change, while simultaneously decarbonizing. Extreme weather events such as heat waves and droughts are rising in both severity and frequency, which is threatening the reliability of electricity grids through increased demand, generation capacity losses, and equipment failures. Consequently, incorporating hydrometeorological stressors into computational power systems analysis is becoming an even more critical tool in long term planning and short term operations. However, there is a general lack of open-source customizable grid simulation software capable of exhaustively stress testing the grid under hydrometeorological uncertainty, and/or examining potential risk mitigation pathways. A related, persistent challenge for power system modelers is striking an appropriate balance between model fidelity (e.g. spatial scale and time resolution) and computational tractability (wall clock run-time). In this study, we are proposing a solution to this problem with open-source software that allows users to seamlessly customize the scale and track the accuracy of grid operations models. Our approach allows users to search over numerous model parameters (network topology, mathematical formulation, economic hurdle rates, and transmission line scaling) to identify model instantiations that accommodate experimental design. Further, we use this approach to demonstrate the importance of including extreme weather events in model validation and model selection. Focusing on the occurrence of heatwaves and droughts in the U.S. Western Interconnection, we examine role of extreme events in balancing tradeoffs between model fidelity and run-time at the model design stage.

Economics↗

Quantifying Uncertainties in Nighttime Light Retrievals From Suomi-NPP and NOAA-20 VIIRS Day/Night Band Data

Satellite observations of nighttime lights (NTL) from Suomi-NPP and NOAA-20 VIIRS Day/Night Band data have been widely used to estimate human activities. Long-term changes such as urban development and abrupt short-term changes such as power outages have been monitored from temporal NTL acquired by satellites. While high temporal NTL variation has been found across NTL data of varying temporal scale (e.g., daily, monthly, and annual composites), the sources of measurement error and uncertainty are poorly understood. This paper quantifies the sources of VIIRS-derived NTL uncertainty due to view-illumination geometry, surface Bidirectional Reflectance Distribution Function (BRDF)/albedo, and the effects of snow cover, lunar irradiance, aerosol loading, cloud mask, vegetation, geometry, and ephemeral artifacts (e.g., the Aurora Borealis). Based on this current assessment of NASA Black Marble retrievals (VNP46, Collection V001), we found that angular and atmospheric effects dominate retrieval uncertainty. Errors introduced by upstream data inputs (e.g., a coarser nighttime snow cover flag and misclassification errors in the existing VIIRS nighttime cloud mask) were also found to impact retrieval quality. Despite these challenges, a consistent daily NTL time series record can be routinely generated from top-of-atmosphere VNP46 radiances. Key recommendations include: (1) the use of lunar-BRDF adjusted and atmospherically corrected NTL (i.e., as identified as high-quality retrievals in the VNP46 QA fields), (2) development and improvement to the VIIRS snow cover and cloud masks algorithms to accurately reflect NTL retrieval conditions, (3) characterizing seasonal variations in NTL due to vegetation and snow, (4) reducing geometric effects due to the spatial mismatch of gridded pixel and observation footprint, (5) employing angularly-consistent NTL observations from multiple VIIRS instruments (i.e., Suomi-NPP and NOAA-20) to reduce pixel-based uncertainties and address persistent data gaps, and (6) being mindful of surface-reflected radiance from aurora events at mid-to-high latitudes.

Zhuosen Wang↗

Data Management Challenges of Exascale Scientific Simulations: A Case Study with the Gyrokinetic Toroidal Code and ADIOS

The push towards exascale computing and the recent introduction of multi-petascale supercomputers have enabled science applications to run complex simulations. However, the gap between compute and I/O has grown wider, even as applications seek to generate and persist increasing amounts of data. Optimizing I/O is challenging and remains a bottleneck at scale. In this paper, we present initial I/O performance results of running Gyrokinetic Toroidal Code (GTC) on Summit, a 200 Petaflop system at Oak Ridge National Laboratory. To manage the complex data in GTC, we use ADIOS, an I/O and data management middleware that provides a rich set of APIs to manage and interact with scientific data. We discuss optimizations performed to obtain improvements in I/O performance and identify a set of challenges that will drive the design and development of next generation data management libraries.

Wan, Lipeng↗

THE TRENDS HIGH-CONTRAST IMAGING SURVEY. III. A FAINT WHITE DWARF COMPANION ORBITING HD 114174

The nearby Sun-like star HD 114174 exhibits a strong and persistent Doppler acceleration indicating the presence of an unseen distant companion. We have acquired high-contrast imaging observations of this star using NIRC2 at Keck and report the direct detection of the body responsible for causing the ''trend''. HD 114174 B has a projected separation of 692 {+-} 9 mas (18.1 AU) and is 10.75 {+-} 0.12 mag (contrast of 5 Multiplication-Sign 10{sup -5}) fainter than its host in the K-band, requiring aggressive point-spread function subtraction to identify. Our astrometric time baseline of 1.4 yr demonstrates physical association through common proper motion. We find that the companion has absolute magnitude, M{sub J} = 13.97 {+-} 0.11, and colors, J - K = 0.12 {+-} 0.16 mag. These characteristics are consistent with an Almost-Equal-To T3 dwarf, initially leading us to believe that HD 114174 B was a substellar object. However, a dynamical analysis that combines radial velocity measurements with available imaging data indicates a minimum mass of 0.260 {+-} 0.010 M{sub Sun }. We conclude that HD 114174 B must be a white dwarf. Assuming a hydrogen-rich composition, atmospheric and evolutionary model fits yield an effective temperature T{sub eff} = 8200 {+-} 4000 K, surface gravity log g = 8.90 {+-} 0.02, and cooling age of t{sub c} Almost-Equal-To 3.4 Gyr, which is consistent with the 4.7{sup +2.3}{sub -2.6} Gyr host star isochronal age estimate. HD 114174 B is a benchmark object located only 26.14 {+-} 0.37 pc from the Sun. It may be studied at a level of detail comparable to Sirius and Procyon, and used to understand the link between the mass of white dwarf remnants with that of their progenitors.

79 ASTRONOMY AND ASTROPHYSICS↗

GLBRC Soil Yearlong Incubation 13C-SIP-Lipidomics

Data package for Lipids represent a dynamic, yet stable pool of microbially-derived soil carbon This data is published under a CC0 license. The authors encourage data reuse and request attribution by referencing the below citations for the data packages and associated manuscript. Please cite as: Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. GLBRC Soil Yearlong Incubation 13C-SIP-Lipidomics. [Data Set] PNNL DataHub. doi: Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. MSV000097435: GLBRC soil yearlong incubation 13C-SIP-Lipidomics [Data Set] MassIVE. doi:10.25345/C57659T3K Rempfert KR, Bell SL, Kasanke CP, Kyle JE, Hofmockel KS. 2025. Lipids represent a dynamic, yet stable pool of microbially-derived soil carbon. In Prep This data package consists of compound-specific 13C SIP-lipidomics data from a yearlong tracer incubation experiment designed to investigate microbial lipid persistence in switchgrass bioenergy crop soils. In order to explore how lipid structure may modulate the persistence of C in soil lipids, we leveraged soils from two sites (Michigan - sandy texture, Wisconsin - silty texture) operated by the U.S. Department of Energy-funded Great Lakes Bioenergy Research Center (GLBRC). These sites had comparable climates, identical management practices, but contrasting soil textures, allowing us to assess the variability of lipid accrual or degradation in soils as well as provide insight regarding the degree to which edaphic properties may regulate the retention of soil lipids. Untargeted lipidomics analyses were performed to identify 13C-labeled lipids in the soil microbiome after long-term incubation. Soils were supplemented with 100 micrograms glucose per gram dry soil (99 atom % 13C or natural abundance for paired control) and incubated; samples were collected two months and one year after glucose addition. Lipid extracts (MPLEx) were analyzed by LC-MS/MS and identified using LIQUID. Calculation of isotopic enrichment of lipids was performed by targeted approach using TarMet to quantify lipid isotopologues and IsoCorrectoR to correct for natural abundance isotopes. Contents: Data package contents reported here are the first version and contain downstream analysis files for the raw LC-MS mass spectrometry files (.mzXML) deposited at the MassIVE database repository under accession MSV000097435 (80 experimental runs; 5.85 GB) | MassIVE DOI: 10.25345/C57659T3K. Support files include the additional data download 'Read Me' file containing data descriptor information. Reported data download contents are structured for compliance with project data sharing guidelines, community standards initiatives, and sponsor stakeholder policies supporting FAIR data principles. Data processing software, analysis tools, and data workflows are listed below corresponding to the host repository long-term location. Available Data Downloads (0.3 GB): "GLBRC soil yearlong incubation 13C-SIP-Lipidomics_readme.txt" - 'Read Me' data package content file (txt) "GLBRC_DataPackage_analysis files" - Data processing files (Rmd) and saved intermediate data processing outputs (rds, csv, xlsx) "GLBRC_13C_lipidomics_dataset.xlsx" - processed data in tabular format (xlsx) Linked Software: LIQUID LC-MS Analysis Software | 10.5281/zenodo.6459462 Lipid Mini-On Software Tools | 10.5281/zenodo.1492803 pmartR Omics Statistical Software | 10.5281/zenodo.6108667 xcms (v4.3.3) TarMet (v1.1.1) IsoCorrectoR (1.24.0) Funding Acknowledgments: This research was supported by an Early Career Research Program award funded by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research (OBER) Genomic Science program under FWP 68292, FWP 07880 and EMSL Exploratory Research Project 51095. A portion of this work was performed in the William R. Wiley Environmental Molecular Sciences Laboratory, a national scientific user facility sponsored by OBER and located at Pacific Northwest National Laboratory (PNNL). PNNL is a multi-program national laboratory operated by Battelle for the DOE under Contract DE-AC05-76RLO1830.

Rempfert, Kaitlin R [Pacific Northwest National La↗

SETI OBSERVATIONS OF EXOPLANETS WITH THE ALLEN TELESCOPE ARRAY

We report radio SETI observations on a large number of known exoplanets and other nearby star systems using the Allen Telescope Array (ATA). Observations were made over about 19000 hr from 2009 May to 2015 December. This search focused on narrowband radio signals from a set totaling 9293 stars, including 2015 exoplanet stars and Kepler objects of interest and an additional 65 whose planets may be close to their habitable zones. The ATA observations were made using multiple synthesized beams and an anticoincidence filter to help identify terrestrial radio interference. Stars were observed over frequencies from 1 to 9 GHz in multiple bands that avoid strong terrestrial communication frequencies. Data were processed in near-real time for narrowband (0.7–100 Hz) continuous and pulsed signals with transmitter/receiver relative accelerations from −0.3 to 0.3 m s{sup −2}. A total of 1.9 × 10{sup 8} unique signals requiring immediate follow-up were detected in observations covering more than 8 × 10{sup 6} star-MHz. We detected no persistent signals from extraterrestrial technology exceeding our frequency-dependent sensitivity threshold of 180–310 × 10{sup −26} W m{sup −2}.

79 ASTRONOMY AND ASTROPHYSICS↗

Energetic Particles of Cosmic Accelerators II: Active Galactic Nuclei and Gamma-ray Bursts

The high-energy universe has revealed that energetic particles are ubiquitous in the cosmos and play a vital role in the cultivation of cosmic environments on all scales. Our pursuit of more than a century to uncover the origins and fate of these cosmic energetic particles has given rise to some of the most interesting and challenging questions in astrophysics. Within our own galaxy, we have seen that energetic particles engage in a complex interplay with the galactic environment and even drive many of its key characteristics (for more information, see the first white paper in this series). On cosmological scales, the energetic particles supplied by the jets of active galactic nuclei (AGN) are an important source of energy for the intracluster and intergalactic media, providing a mechanism for regulating star formation and black hole growth and cultivating galaxy evolution (AGN feedback). Gamma-ray burst (GRB) afterglows encode information about their circumburst environment, which has implications for massive stellar winds during previous epochs over the stellar lifecycle. As such, GRB afterglows provide a means for studying very high-redshift galaxies since GRBs can be detected even if their host galaxy cannot. It has even been suggest that GRB could be used to measure cosmological distance scales if they could be shown to be standard candles. Though they play a key role in cultivating the cosmological environment and/or enabling our studies of it, there is still much we do not know about AGNs and GRBs, particularly the avenue in which and through which they supply radiation and energetic particles, namely their jets. Despite the enormous progress in particle-in-cell and magnetohydrodynamic simulations, we have yet to pinpoint the processes involved in jet formation and collimation and the conditions under which they can occur. For that matter, we have yet to identify the mechanism(s) through which the jet accelerates energetic particles – is it the commonly invoked diffusive shock acceleration process or is another mechanism, such as magnetic reconnection, required? Do AGNs and GRBs accelerate hadrons, and if so, do they accelerate them to ultra-high energies and are there high-energy neutrinos associated with them? MeV gamma-ray astronomy, enabled by technological advances that will be realized in the coming decade, will provide a unique and indispensable perspective on the persistent mysteries of the energetic universe. This White Paper is the second of a two-part series highlighting the most well-known high-energy cosmic accelerators and contributions that MeV gamma-ray astronomy will bring to understanding their energetic particle phenomena. Specifically, MeV astronomy will: 1. Determine whether AGNs accelerate CRs to ultra-high energies; 2. Provide the missing pieces for the physics of the GRB prompt emission; 3. Measure magnetization in cosmic accelerators and search for acceleration via reconnection.

Venters, Tonia M.↗

Fate of leaf litter deposits and impacts on oxygen availability in bank filtration column studies

Highlights: • Impacts of leaf inputs in bank filtration and soil aquifer treatment. • Long-term column experiments with leaf litter fragments. • Severe oxygen consumption by bio-degradation within a few millimeters. • No co-metabolic degradation of benzotriazole and carbamazepine. • Decline of carbon content relative to nitrogen and sulfur. Degradation of particulate organic carbon (POC) such as leaf litter might deplete dissolved oxygen within the upper layers of bank filtration, an efficient and robust barrier for pathogens and for various organic micro-pollutants (OMP) in water supply systems worldwide. The degradation of OMP during bank filtration depends on the redox conditions. The present study aimed at identifying the impacts and fates of different local leaves on the oxygen consumption and the possible biological degradation of indicator OMP. Oxygen concentrations initially decreased within the columns from around 8 mg/L in the influent to low concentrations indicating extensive consumption within a short travel distance. Still a substantial oxygen consumption was observed after 250 days. OMP concentrations were not significantly affected by the microbial processes. A layer of calcium carbonate crystallites was observed on the POC layer. Some leaf fragments appeared to be persistant towards degradation and the carbon content relative to nitrogen and sulfur contents decreased within 250 days. The results demonstrate that trees at bank filtration sites might have a strong long-term impact on the subsurface redox conditions.

54 ENVIRONMENTAL SCIENCES↗

Persistence and plasticity in bacterial gene regulation

Organisms orchestrate cellular functions through transcription factor (TF) interactions with their target genes, although these regulatory relationships are largely unknown in most species. Here we report a high-throughput approach for characterizing TF-target gene interactions across species and its application to 354 TFs across 48 bacteria, generating 17,000 genome-wide binding maps. This dataset revealed themes of ancient conservation and rapid evolution of regulatory modules. We observed rewiring, where the TF sensing and regulatory role is maintained while the arrangement and identity of target genes diverges, in some cases encoding entirely new functions. We further integrated phenotypic information to define new functional regulatory modules and pathways. So, we identified 242 new TF DNA binding motifs, including a 70% increase of known Escherichia coli motifs and the first annotation in Pseudomonas simiae, revealing deep conservation in bacterial promoter architecture. Our method provides a versatile tool for functional characterization of genetic pathways in prokaryotes and eukaryotes.

59 BASIC BIOLOGICAL SCIENCES↗

Low-temperature mineralization of perfluorocarboxylic acids

Per- and polyfluoroalkyl substances (PFAS) are persistent, bioaccumulative pollutants found in water resources at concentrations harmful to human health. Whereas current PFAS destruction strategies use nonselective destruction mechanisms, we found that perfluoroalkyl carboxylic acids (PFCAs) could be mineralized through a sodium hydroxide–mediated defluorination pathway. PFCA decarboxylation in polar aprotic solvents produced reactive perfluoroalkyl ion intermediates that degraded to fluoride ions (78 to ~100%) within 24 hours. The carbon-containing intermediates and products were inconsistent with oft-proposed one-carbon-chain shortening mechanisms, and we instead computationally identified pathways consistent with many experiments. Degradation was also observed for branched perfluoroalkyl ether carboxylic acids and might be extended to degrade other PFAS classes as methods to activate their polar headgroups are identified.

Science & Technology - Other Topics↗

Albedo and Diffuse POA Measurements to Evaluate Transposition Model Uncertainty

Albedo and diffuse plane of array (DPOA) measurements are used in addition to standard global horizontal irradiance (GHI), direct normal irradiance (DNI), diffuse horizontal irradiance (DNI), and plane of array irradiance (POA) measurements to determine the impact of albedo on transposition model performance. Albedo measurements averaged 0.214. Daily albedo values ranged from 0.148 to 0.236 and were found to be correlated to daily relative humidity. DPOA measurements were compared to calculated DPOA values (from POA and DNI), and helped identify a suspected deviation from due south in the azimuth of the POA measurement. Since the measured albedo average was close to the typical fixed $^{albedo = 0.2}$ assumption, little difference was seen between using measured and fixed albedo (~0.15% differences in mean bias difference (MBD) and root mean squared difference (RMSD)). However, evaluation of transposition models at other fixed albedos showed an albedo change of 0.1 is found to increase total modeled insolation by approximately 1%. Thus, for locations with different ground surfaces (e.g., persistent snow cover of black surfaces), the impact of using measured albedo instead of the fixed $^{albedo = 0.2}$ assumption may be greater. Measurement deviations resulted in up to 2% changes in MBD and RIVISD when switching between interrelated measurements (e.g., GHI and DHI as inputs to transposition models versus DNI and DHI as inputs). Variation among transposition models was also up to 2% MBD and RMSD. Thus, for this data set, measurement deviation and transposition model selection are found to have more impact than using measured albedo instead fixed albedo.

42 ENGINEERING↗

In-Situ Uranium Source Treatment Performance Assessment Elements - 20247

Field-scale in situ injection of an aqueous polyphosphate amendment was conducted to decrease uranium leaching from a vadose zone source to groundwater near the Columbia River at the U.S. Department of Energy's Hanford Site. After an initial phase of application in November 2015, this treatment was applied as an enhanced attenuation approach in September 2018, targeting uranium in a subsurface zone where water table periodically rises in response to the seasonal high river stage. Uranium within this zone is aqueous, adsorbed, and in low- and high-solubility precipitates and is mobilized into the groundwater at high river stage, resulting in a persistent groundwater plume. The polyphosphate amendment creates phosphate coatings on uranium (potentially including low solubility uranium-phosphate precipitates) that decrease the uranium leached into groundwater when the zone is periodically rewetted to improve the ability of natural attenuation to meet groundwater concentration objectives. For treatment, the amendment was injected into a network of wells within the periodically rewetted source area. Multiple lines of evidence are being applied to evaluate the performance of the phosphate treatment. Three elements of this performance assessment include 1) identifying the distribution of injected phosphate amendment to the targeted treatment zone using cross-borehole electrical resistivity tomography and comparisons of phosphate precipitates between pre- and post-treatment samples, 2) demonstrating the functional reduction in uranium mobility and leachability using laboratory tests with pre- and post- treatment sediments from the source zone, and 3) evaluating the presence of low-solubility uranium phosphate minerals and/or coatings associated with reduced uranium mobility. (authors)

07 ISOTOPE AND RADIATION SOURCES↗

Self-interacting asymmetric dark matter coupled to a light massive dark photon

Dark matter (DM) with sizeable self-interactions mediated by a light species offers a compelling explanation of the observed galactic substructure; furthermore, the direct coupling between DM and a light particle contributes to the DM annihilation in the early universe. If the DM abundance is due to a dark particle-antiparticle asymmetry, the DM annihilation cross-section can be arbitrarily large, and the coupling of DM to the light species can be significant. We consider the case of asymmetric DM interacting via a light (but not necessarily massless) Abelian gauge vector boson, a dark photon. In the massless dark photon limit, gauge invariance mandates that DM be multicomponent, consisting of positive and negative dark ions of different species which partially bind in neutral dark atoms. We argue that a similar conclusion holds for light dark photons; in particular, we establish that the multi-component and atomic character of DM persists in much of the parameter space where the dark photon is sufficiently light to mediate sizeable DM self-interactions. We discuss the cosmological sequence of events in this scenario, including the dark asymmetry generation, the freeze-out of annihilations, the dark recombination and the phase transition which gives mass to the dark photon. We estimate the effect of self-interactions in DM haloes, taking into account this cosmological history. We place constraints based on the observed ellipticity of large haloes, and identify the regimes where DM self-scattering can affect the dynamics of smaller haloes, bringing theory in better agreement with observations. Moreover, we estimate the cosmological abundance of dark photons in various regimes, and derive pertinent bounds.

79 ASTRONOMY AND ASTROPHYSICS↗

Decay spectroscopy of two-quasiparticle K isomers in Cm 246 , 248 via inelastic and transfer reactions

The decay of K isomers in Cm (Z = 96) isotopes has been investigated using inelastic and transfer reactions. The half-life of a previously identified 2-quasiparticle (qp) K π = 8⁻ isomer in 246 Cm has been measured. A new 2-qp isomer is observed in 248 Cm, its half-life measured and its decay scheme established. The reduced K hindrances extracted for the decay transitions from the isomers in 246,248 Cm suggest K to be a robust quantum number and validate axial symmetry in these nuclei. The excitation energies of the 2-qp isomers in 246 Cm (N = 150) and 248 Cm (N = 152) confirm the persistence of a deformed subshell gap at N = 152 in the Z ≈ 100 region down to Z = 96 nuclei.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Salmonella enterica Serovar Typhi Lipopolysaccharide O-Antigen Modification Impact on Serum Resistance and Antibody Recognition

Salmonella enterica serovar Typhi is a human-restricted Gram-negative bacterial pathogen responsible for causing an estimated 27 million cases of typhoid fever annually, leading to 217,000 deaths, and current vaccines do not offer full protection. The O-antigen side chain of the lipopolysaccharide is an immunodominant antigen, can define host-pathogen interactions, and is under consideration as a vaccine target for some Gram-negative species. The composition of the O-antigen can be modified by the activity of glycosyltransferase (gtr) operons acquired by horizontal gene transfer. Here we investigate the role of two gtr operons that we identified in the S. Typhi genome. Strains were engineered to express specific gtr operons. Full chemical analysis of the O-antigens of these strains identified gtr-dependent glucosylation and acetylation. The glucosylated form of the O-antigen mediated enhanced survival in human serum and decreased complement binding. A single nucleotide deviation from an epigenetic phase variation signature sequence rendered the expression of this glucosylating gtr operon uniform in the population. In contrast, the expression of the acetylating gtrC gene is controlled by epigenetic phase variation. Acetylation did not affect serum survival, but phase variation can be an immune evasion mechanism, and thus, this modification may contribute to persistence in a host. In murine immunization studies, both O-antigen modifications were generally immunodominant. Our results emphasize that natural O-antigen modifications should be taken into consideration when assessing responses to vaccines, especially O-antigen-based vaccines, and that the Salmonella gtr repertoire may confound the protective efficacy of broad-ranging Salmonella lipopolysaccharide conjugate vaccines.

59 BASIC BIOLOGICAL SCIENCES↗

Exploring Informal Learning at the Airlines

Airline pilot training is extensive, highly structured, and defined by aircraft and airspace system operating requirements, yet pilots describe a tradition of between-pilot knowledge transfer and self-directed learning. This learning supplements their approved training programs. While industry and regulators focus on “formal learning” systems, pilots report relying on “informal learning” to build operational expertise. The persistence of informal learning suggests gaps in how successfully formal learning prepares pilots to handle operational complexities. The community that researches learning has extensively studied informal learning, and its characteristics seem to align with how pilots report increasing their skills and knowledge informally. However, no research into informal learning practices among airline pilots seems to exist. In this paper we provide examples of informal learning in commercial aviation, how they fit into two existing frameworks for workplace learning, and propose that researching informal learning might help identify opportunities to improve formal aviation learning systems.

pilot learning↗

Graph Identification of Proteins in Tomograms (GRIP-Tomo) 2.0: Topologically aware classification for proteins

Cryo-electron tomography (cryo-ET) enables structural characterization of biomolecules under near-native conditions. Existing approaches for interpreting the resulting three-dimensional volumes are computationally expensive and have difficulty interpreting density associated with small proteins/complexes. To explore alternate approaches for identifying proteins in cryo-ET data we pursued a Graph Network and topologically invariant approach. Here, we report on a fast algorithm that classifies particles by searching for nuances of evolutionarily conversed motifs and the geometrical characteristics of protein structure. GRIP-Tomo 2.0 is a machine-learning pipeline that extracts interpretable topological features of protein structures within noisy experimental backgrounds. Compared to version 1.0, the new pipeline includes three upgrades that significantly improve performance including synthetic tomogram generation simulating realistic noise, graph-based persistent feature extraction as protein fingerprints, and high-performance computing acceleration. GRIP-Tomo 2.0 achieves over 90% accuracy in classifying between proteins and noise using both real and synthetic datasets which represents a foundational step toward advancing cryo-ET workflows and empowering automated visual proteomics.

Li, Chengxuan↗

Spectroscopic signatures and oxidation characteristics of nanosecond laser-induced cerium plasmas

Improving technologies related to the wide area environmental sampling of nuclear materials supports the nuclear nonproliferation mission of preventing the proliferation of nuclear weapons by monitoring nuclear weapons tests and detecting undeclared nuclear fuel cycle activities. Standoff, laser-based detection techniques such as laser-induced breakdown spectroscopy have the potential to offer robust, field-deployable methods that provide rapid element-specific and phase identifiable measurements over a wide range of materials. This work aims to elucidate the effects of atmospheric conditions and oxidation reactions on the highly complex and transient spectroscopic signatures of laser-induced plutonium surrogate plasmas. Time-resolved spectra of nanosecond laser ablation cerium plasmas were measured using laser-induced breakdown spectroscopy in a range of atmospheres containing low to high concentrations of oxygen. Here, the growth of strong CeO molecular emission bands was observed in the visible spectrum, where it was shown that the persistence of CeO is reduced from around 60 μs to 50 μs in oxygen rich atmospheric environments. To further investigate the growth and depletion of CeO in the laser-produced plasma, ratios of CeO-to-Ce emission were generated using integrated intensities corresponding to the Q-branch of the CeO D 1 -X 1 transitions and numerous strong atomic Ce peaks. It was determined that the fastest rate of formation of CeO in argon occurred for moderate oxygen mass fractions between 0.10 and 0.15 while the ratios were reduced at higher oxygen mass fractions (i.e., Y O 2 = 0.20) due to competing oxidation reactions and lower plasma temperatures.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗