A machine learning based approach to reaction rate estimation
Development of a machine learning algorithm for automatically training subgraph isomorphic decision trees (SIDT) to predict reaction rate coefficients.
Chemistry↗
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Results for “Learning Algorithm”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Machine learning inversion from small-angle scattering for charged polymers
We develop Monte Carlo simulations for uniformly charged polymers and a machine learning algorithm to interpret the intra-polymer structure factor of the charged polymer system, which can be obtained from small-angle scattering experiments. The polymer is modeled as a chain of fixed-length bonds, where the connected bonds are subject to bending energy, and there is also a screened Coulomb potential for charge interaction between all joints. The bending energy is determined by the intrinsic bending stiffness, and the charge interaction depends on the interaction strength and screening length. All three contribute to the stiffness of the polymer chain and lead to longer and larger polymer conformations. The screening length also introduces a second length scale for the polymer besides the bending persistence length. To obtain the inverse mapping from the structure factor to these polymer conformation and energy-related parameters, we generate a large data set of structure factors by running simulations for a wide range of polymer energy parameters. We use principal component analysis to investigate the intra-polymer structure factors and determine the feasibility of the inversion using the nearest neighbor distance. We employ Gaussian process regression to achieve the inverse mapping and extract the characteristic parameters of polymers from the structure factor with low relative error.
36 MATERIALS SCIENCE↗
Galvanic corrosion underlies coulombic efficiency differences in high-performing lithium metal battery electrolytes
Machine learning algorithms are combined with experimental methods to reveal galvanic corrosion as a key factor influencing efficiency in high-performing lithium-metal battery electrolytes.
Oyakhire, Solomon T. [Department of Chemical Engin↗
Photometric redshift-aided classification using ensemble learning
We present SHEEP, a new machine learning approach to the classic problem of astronomical source classification, which combines the outputs from the XGBoost, LightGBM, and CatBoost learning algorithms to create stronger classifiers. A novel step in our pipeline is that prior to performing the classification, SHEEP first estimates photometric redshifts, which are then placed into the data set as an additional feature for classification model training; this results in significant improvements in the subsequent classification performance. SHEEP contains two distinct classification methodologies: (i) Multi-class and (ii) one versus all with correction by a meta-learner. We demonstrate the performance of SHEEP for the classification of stars, galaxies, and quasars using a data set composed of SDSS and WISE photometry of 3.5 million astronomical sources. The resulting F1 -scores are as follows: 0.992 for galaxies; 0.967 for quasars; and 0.985 for stars. In terms of the F1-scores for the three classes, SHEEP is found to outperform a recent RandomForest-based classification approach using an essentially identical data set. Our methodology also facilitates model and data set explainability via feature importances; it also allows the selection of sources whose uncertain classifications may make them interesting sources for follow-up observations.
79 ASTRONOMY AND ASTROPHYSICS↗
Barium stars as tracers of s -process nucleosynthesis in AGB stars: II. Using machine learning techniques on 169 stars
Barium (Ba) stars are characterised by an abundance of heavy elements made by the slow neutron capture process (s-process). This peculiar observed signature is due to the mass transfer from a stellar companion, bound in a binary stellar system, to the Ba star observed today. The signature is created when the stellar companion is an asymptotic giant branch (AGB) star. We aim to analyse the abundance pattern of 169 Ba stars using machine learning techniques and the AGB final surface abundances predicted by the FRUITY and Monash stellar models. We developed machine learning algorithms that use the abundance pattern of Ba stars as input to classify the initial mass and metallicity of each Ba star’s companion star using stellar model predictions. We used two algorithms. The first exploits neural networks to recognise patterns, and the second is a nearest-neighbour algorithm that focuses on finding the AGB model that predicts the final surface abundances closest to the observed Ba star values. In the second algorithm, we included the error bars and observational uncertainties in order to find the best-fit model. The classification process was based on the abundances of Fe, Rb, Sr, Zr, Ru, Nd, Ce, Sm, and Eu. We selected these elements by systematically removing s-process elements from our AGB model abundance distributions and identifying the elements whose removal had the biggest positive effect on the classification. We excluded Nb, Y, Mo, and La. Our final classification combined the output of both algorithms to identify an initial mass and metallicity range for each Ba star companion. With our analysis tools, we identified the main properties for 166 of the 169 Ba stars in the stellar sample. The classifications based on both stellar sets of AGB final abundances show similar distributions, with an average initial mass of M = 2.23 M ⊙ and 2.34 M ⊙ and an average [Fe/H] = –0.21 and –0.11, respectively. We investigated why the removal of Nb, Y, Mo, and La improves our classification and identified 43 stars for which the exclusion had the biggest effect. We found that these stars have statistically significant and different abundances for these elements compared to the other Ba stars in our sample. We discuss the possible reasons for these differences in the abundance patterns.
79 ASTRONOMY AND ASTROPHYSICS↗
DESI mock challenge: Halo and galaxy catalogues with the bias assignment method
We present a novel approach to the construction of mock galaxy catalogues for large-scale structure analysis based on the distribution of dark matter halos obtained with effective bias models at the field level. We aim to produce mock galaxy catalogues capable of generating accurate covariance matrices for a number of cosmological probes that are expected to be measured in current and forthcoming galaxy redshift surveys (e.g. two- and three-point statistics). The construction of the catalogues shown in this paper is part of a mock-comparison project within the Dark Energy Spectroscopic Instrument (DESI) collaboration. We use the bias assignment method ( BAM ) to model the statistics of halo distribution through a learning algorithm using a few detailed N-body simulations, and approximated gravity solvers based on Lagrangian perturbation theory. We introduce cosmic-web-dependent corrections to modelling redshift-space distortions at the N-body level – both in the halo and galaxy distributions –, as well as a multi-scale approach for accurate assignment of halo properties. Using specific models of halo occupation distributions to populate halos, we generate galaxy mocks with the expected number density and central-satellite fraction of emission-line galaxies, which are a key target of the DESI experiment. BAM generates mock catalogues with per cent accuracy in a number of summary statistics, such as the abundance, the two- and three-point statistics of halo distributions, both in real and redshift space. In particular, the mock galaxy catalogues display ~3%-10% accuracy in the multipoles of the power spectrum up to scales of k ~ 0.4 h -1 Mpc. We show that covariance matrices of two- and three-point statistics obtained with BAM display a similar structure to the reference simulation. BAM offers an efficient way to produce mock halo catalogues with accurate two- and three-point statistics and is able to generate a variety of multi-tracer catalogues with precise covariance matrices of several cosmological probes. We discuss future developments of the algorithm towards mock production in DESI and other galaxy-redshift surveys.
79 ASTRONOMY AND ASTROPHYSICS↗
Barium stars as tracers of s -process nucleosynthesis in AGB stars
Barium (Ba) stars help to verify asymptotic giant branch (AGB) star nucleosynthesis models since they experienced pollution from an AGB binary companion and thus their spectra carry the signatures of the slow neutron capture process (s process). For a large number (180) of Ba stars, we searched for AGB stellar models that match the observed abundance patterns. We aim to uncover any systematic deviations of the sample abundances from the predictions of the nucleosynthesis models. We employed three machine learning algorithms as classifiers: a Random Forest method, developed for this work, and the two classifiers used in our previous study. Compared to that work, we also expanded our observational sample with 11 Ba stars available in the supersolar metallicity range. We studied the statistical behaviour of the different s-process elements in the observational sample to investigate if the AGB models systematically under- or overpredict the abundances observed in the Ba stars and show the results in the form of violin plots of the residuals between spectroscopic abundances and model predictions. We inspected the correlations between the observed [Fe/H], the s-process elemental abundances, and the residuals. We employed the [Zr/Fe] and [Nb/Fe] abundances as a thermometer to constrain the operational temperature that rules the production of these elements in the sample stars, assuming a steady-state s process. We also investigated the mass distribution of the identified polluter AGB stars and the behaviour of the δ parameter, which describes the fraction of accreted AGB material relative to the Ba star envelope. We find a significant trend in the residuals that implies an underproduction of the elements just after the first s-process peak (Nb, Mo, and Ru) in the models relative to the observations. This may originate from a neutron-capture process (e.g. the intermediate neutron-capture process, i process) not yet included in the AGB models of metallicity from solar to roughly 1/5 solar, corresponding to the range of the Ba stars. Correlations are found between the residuals of these peculiar elements, suggesting a common origin for the deviations from the models. In addition, there is a weak metallicity dependence of the residuals of these elements. The s-process temperatures derived with the [Zr/Fe] – [Nb/Fe] thermometer have an unrealistic value for the majority of our stars. The most likely explanation is that at least a fraction of these elements are not produced in a steady-state s process, and instead may be due to processes not included in the AGB models. The mass distribution of the identified models confirms that our sample of Ba stars was polluted by low-mass AGB stars (< 4 M ⊙ ). Most of the matching AGB models require low accreted mass, but a few systems with high accreted mass are needed to explain the observations.
79 ASTRONOMY AND ASTROPHYSICS↗
CIRCLEZ : Reliable photometric redshifts for active galactic nuclei computed solely using photometry from Legacy Survey Imaging for DESI
Photometric redshifts for galaxies hosting an accreting supermassive black hole in their center, known as active galactic nuclei (AGNs), are notoriously challenging. At present, they are most optimally computed via spectral energy distribution (SED) fittings, assuming that deep photometry for many wavelengths is available. However, for AGNs detected from all-sky surveys, the photometry is limited and provided by a range of instruments and studies. This makes the task of homogenizing the data challenging, presenting a dramatic drawback for the millions of AGNs that wide surveys such as SRG/eROSITA are poised to detect. This work aims to compute reliable photometric redshifts for X-ray-detected AGNs using only one dataset that covers a large area: the tenth data release of the Imaging Legacy Survey (LS10) for DESI. LS10 provides deep grizW1-W4 forced photometry within various apertures over the footprint of the eROSITA-DE survey, which avoids issues related to the cross-calibration of surveys. We present the results from CIRCLEZ, a machine-learning algorithm based on a fully connected neural network. CIRCLEZ is built on a training sample of 14 000 X-ray-detected AGNs and utilizes multi-aperture photometry, mapping the light distribution of the sources. The accuracy (σNMAD) and the fraction of outliers (η) reached in a test sample of 2913 AGNs are equal to 0.067 and 11.6%, respectively. The results are comparable to (or even better than) what was previously obtained for the same field, but with much less effort in this instance. We further tested the stability of the results by computing the photometric redshifts for the sources detected in CSC2 and Chandra-COSMOS Legacy, reaching a comparable accuracy as in eFEDS when limiting the magnitude of the counterparts to the depth of LS10. The method can be applied to fainter samples of AGNs using deeper optical data from future surveys (for example, LSST, Euclid), granting LS10-like information on the light distribution beyond the morphological type. Along with this paper, we have released an updated version of the photometric redshifts (including errors and probability distribution functions) for eROSITA/eFEDS.
79 ASTRONOMY AND ASTROPHYSICS↗
End-to-End Jet Classification of Boosted Top Quarks with CMS Open Data
We describe a novel application of the end-to-end deep learning technique to the task of discriminating top quark-initiated jets from those originating from the hadronization of a light quark or a gluon. The end-to-end deep learning technique combines deep learning algorithms and low-level detector representation of the high-energy collision event. In this study, we use lowlevel detector information from the simulated CMS Open Data samples to construct the top jet classifiers. To optimize classifier performance we progressively add low-level information from the CMS tracking detector, including pixel detector reconstructed hits and impact parameters, and demonstrate the value of additional tracking information even when no new spatial structures are added. Relying only on calorimeter energy deposits and reconstructed pixel detector hits, the end-to-end classifier achieves a ROC-AUC score of 0.975±0.002 for the task of classifying boosted top quark jets. After adding derived track quantities, the classifier ROC-AUC score increases to 0.9824±0.0013, serving as the first performance benchmark for these CMS Open Data samples.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Dynamic Mode Decomposition of Random Pressure Fields over Bluff Bodies
Fluctuating surface pressures on a bluff body exposed to a boundary layer flow generally are characterized as a spatiotemporally varying random field. In this paper, a dynamic mode decomposition (DMD) was applied to extract dominant features embedded in these random pressure fields. Utilizing an unsupervised machine learning algorithm, spatial modes and their temporal variations were grouped into different clusters at scales, e.g., macro, meso, and micro. A proper orthogonal decomposition (POD) of the experimental data was carried out to observe commonalities and distinctive perspectives each decomposition offers. Here, a comprehensive examination of the DMD/POD for their convergence criteria, data sufficiency, and modal components analysis was conducted. The physical interpretation of the spatiotemporal pressure field based on these decomposition schemes was discussed. At different scales, the DMD modes can capture the evolution of aerodynamic features, e.g., convection of vortices (or vortex tubes) and other structures. The distribution of energy among these three broad scales also reflects an energy cascade in pressure fluctuations akin to turbulence.
97 MATHEMATICS AND COMPUTING↗
Zonal flow generation in inertial confinement fusion implosions
A supervised machine learning algorithm trained on a multi-petabyte dataset of inertial confinement fusion simulations has identified a class of implosions that robustly achieve high yield, even in the presence of drive variations and hydrodynamic perturbations. These implosions are purposefully driven with a time-varying asymmetry, such that coherent flow generation during hotspot stagnation forces the capsule to self-organize into an ovoid, a shape that appears to be more resilient to shell perturbations than spherical designs. Here this new class of implosions, whose configurations are reminiscent of zonal flows in magnetic fusion devices, may offer a path to robust inertial fusion.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Filling data analysis gaps in time-resolved crystallography by machine learning
There is a growing understanding of the structural dynamics of biological molecules fueled by x-ray crystallography experiments. Time-resolved serial femtosecond crystallography (TR-SFX) with x-ray Free Electron Lasers allows the measurement of ultrafast structural changes in proteins. Nevertheless, this technique comes with some limitations. One major challenge is the quality of data from TR-SFX measurements, which often faces issues like data sparsity, partial recording of Bragg reflections, timing errors, and pixel noise. To overcome these difficulties, conventionally, large volumes of data are collected and grouped into a few temporal bins. The data in each bin are then averaged and paired with the mean of their corresponding jittered timestamps. This procedure provides one structure per bin, resulting in a limited number of averaged structures for the entire time interval spanned by the experiment. Therefore, the information on ultrafast structural dynamics at high temporal resolution is lost. This has initiated research for advanced methods of analyzing experimental TR-SFX data beyond the standard binning and averaging method. To address this problem, we use a machine learning algorithm called Nonlinear Laplacian Spectral Analysis (NLSA), which has emerged as a promising technique for studying the dynamics of complex systems. In this work, we demonstrate the power of this algorithm using synthetic x-ray diffraction snapshots from a protein with significant data incompleteness, timing uncertainties, and noise. Our study confirms that NLSA is a suitable approach that effectively mitigates the effects of these artifacts in TR-SFX data and recovers accurate structural dynamics information hidden in such data.
Trujillo, Justin (ORCID:0000000285505360)↗
Data-driven learning of Mori–Zwanzig operators for isotropic turbulence
Developing reduced-order models for turbulent flows, which contain dynamics over a wide range of scales, is an extremely challenging problem. In statistical mechanics, the Mori–Zwanzig (MZ) formalism provides a mathematically exact procedure for constructing reduced-order representations of high-dimensional dynamical systems, where the effects due to the unresolved dynamics are captured in the memory kernel and orthogonal dynamics. Turbulence models based on MZ formalism have been scarce due to the limited knowledge of the MZ operators, which originates from the difficulty in deriving MZ kernels for complex nonlinear dynamical systems. In this work, we apply a recently developed data-driven learning algorithm, which is based on Koopman's description of dynamical systems and Mori's linear projection operator, on a set of fully resolved isotropic turbulence datasets to extract the Mori–Zwanzig operators. With data augmentation using known turbulence symmetries, the extracted Markov term, memory kernel, and orthogonal dynamics are statistically converged and the generalized fluctuation–dissipation relation can be verified. The properties of the memory kernel and orthogonal dynamics, and their dependence on the choices of observables are investigated to address the modeling assumptions that are commonly used in MZ-based models. A series of numerical experiments are then constructed using the extracted kernels to evaluate the memory effects on prediction. The results show that the prediction errors are strongly affected by the choice of observables and can be further reduced by including the past history of the observables in the memory kernel.
97 MATHEMATICS AND COMPUTING↗
Forming a database to study reversed magnetic shear from the National Spherical Torus eXperiment using machine learning
Achieving a long-lived reversed magnetic shear (RMS) target plasma in the National Spherical Torus eXperiment Upgrade will require developing various sustainment scenarios. To help with the ongoing plasma control efforts, the development of a new analysis for the motional Stark effect (MSE) diagnostic using a machine learning algorithm, namely, MSE-ML, is described. MSE-ML will be used to identify patterns during RMS discharges, some of which suffer magnetohydrodynamic (MHD) events resulting in current redistribution and monotonic q-profiles. A database consisting of q and magnetic shear profiles is being constructed primarily based on the existing National Spherical Torus eXperiment data with equilibrium reconstructions constrained by the magnetic field pitch angle profile measured using the multi-channel MSE diagnostic. An unsupervised k-means clustering of the data is developed to study the RMS formation as a function of time. The initial clustering from the q-profiles shows significant differences in both amplitude and the duration of the RMS period. As a goal, the clustering results that detect and distinguish shots with substantial and sustained RMS are to be used as a preprocessing step in a supervised algorithm to identify the underlying conditions that lead to long-lasting improved confinement with RMS. Another aim of the MSE-ML study is to identify precursors of RMS-destroying MHD events in either derived data such as the q-profile or directly measured data such as the magnetic field pitch angle profile.
Uzun-Kaymak, I. U. (ORCID:0000000276251493)↗
Full molecular trajectories of RNA polymerase at single base-pair resolution
Significance Optical tweezers enable scientists to follow the dynamics of molecular motors at high resolution. The ability to discern a motor’s discrete steps reveals important insights on its operation. Some motors operate at the scale of angstroms, rendering the observation of their steps extremely challenging. In some cases, such small steps have been observed sporadically; however, the full molecular trajectories of steps and intervals between steps remain elusive due to instrumental noise. Here, we eliminate the main source of noise of most high-resolution dual-trap optical tweezers and developed both a single-molecule assay and a self-learning algorithm to uncover the full trajectories of such a motor: RNA polymerase. Using this method, a whole new set of experiments becomes possible.
59 BASIC BIOLOGICAL SCIENCES↗
Challenges and Technology-Driven Opportunities for Safeguarding Microreactors
Nuclear microreactors (MRs) represent a new class of reactors characterized by their compactness, portability, and low power output. These features enable MRs to supply electricity and process heat to remote areas like military bases; inaccessible locations; small grids, such as on islands; or disaster impacted areas. Compared to traditional light water reactors, MRs have a unique set of attributes that need to be considered for the implementation of safeguard strategies. Current safeguard methodologies are reactor technology specific and are employed on large, stationary reactors where there is easy access by safeguards inspectors and where safeguard equipment can be easily installed and retrofitted. While there are numerous benefits to MRs, their compact size, portability, scalability, and operational lifetime create challenges to the traditional safeguard approaches, thus needing novel safeguard strategies. Here, this paper addresses the unique challenges posed by MRs to the international nuclear safeguards regime, including limited human resources, and explores how technology advancements can help mitigate these challenges. Specifically, it examines novel technologies that could contribute to establishing a comprehensive safeguards framework for MRs. These safeguards-enabling technologies encompass safeguards by design, remote sensing and monitoring technologies, applications of artificial intelligence and machine learning algorithms, utilization of digital twins, and system of systems assessments. While each of these safeguards-enabling technologies offers partial solutions to the challenges posed by MRs for the international safeguards regime, none of them alone can entirely address these challenges. Consequently, a combination of the safeguards-enabling technologies outlined in this paper is recommended to establish a robust safeguards regime for MRs.
98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗
Search for gamma-ray-emitting active galactic nuclei in the Fermi-LAT unassociated sample using machine learning
The second Fermi-LAT source catalog (2FGL) is the deepest all-sky survey available in the gamma-ray band. It contains 1873 sources, of which 576 remain unassociated. Machine-learning algorithms can be trained on the gamma-ray properties of known active galactic nuclei (AGNs) to find objects with AGN-like properties in the unassociated sample. This analysis finds 231 high-confidence AGN candidates, with increased robustness provided by intersecting two complementary algorithms. A method to estimate the performance of the classification algorithm is also presented, that takes into account the differences between associated and unassociated gamma-ray sources. Follow-up observations targeting AGN candidates, or studies of multiwavelength archival data, will reduce the number of unassociated gamma-ray sources and contribute to a more complete characterization of the population of gamma-ray emitting AGNs.
79 ASTRONOMY AND ASTROPHYSICS↗