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At least 811 records · Page 45

Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction

Background: The hydrolysis of biomass to simple sugars used for the production of biofuels in biorefneries requires the action of cellulolytic enzyme mixtures. During the last 50 years, the ascomycete Trichoderma reesei, the main source of industrial cellulase and hemicellulase cocktails, has been subjected to several rounds of classical mutagenesis with the aim to obtain higher production levels. During these random genetic events, strains unable to produce cellulases were generated. Here, whole genome sequencing and transcriptomic analyses of the cellulase-negative strain QM9978 were used for the identifcation of mutations underlying this cellulase-negative phenotype. Results: Sequence comparison of the cellulase-negative strain QM9978 to the reference strain QM6a identifed a total of 43 mutations, of which 33 were located either close to or in coding regions. From those, we identifed 23 single-nucleotide variants, nine InDels, and one translocation. The translocation occurred between chromosomes V and VII, is located upstream of the putative transcription factor vib1, and abolishes its expression in QM9978 as detected during the transcriptomic analyses. Ectopic expression of vib1 under the control of its native promoter as well as overexpression of vib1 under the control of a strong constitutive promoter restored cellulase expression in QM9978, thus confrming that the translocation event is the reason for the cellulase-negative phenotype. Gene deletion of vib1 in the moderate producer strain QM9414 and in the high producer strain Rut-C30 reduced cellulase expression in both cases. Overexpression of vib1 in QM9414 and Rut-C30 had no efect on cellulase production, most likely because vib1 is already expressed at an optimal level under normal conditions. Conclusion: We were able to establish a link between a chromosomal translocation in QM9978 and the cellulasenegative phenotype of the strain. We identifed the transcription factor vib1 as a key regulator of cellulases in T. reesei whose expression is absent in QM9978. We propose that in T. reesei, as in Neurospora crassa, vib1 is involved in cellulase induction, although the exact mechanism remains to be elucidated. The data presented here show an example of a combined genome sequencing and transcriptomic approach to explain a specifc trait, in this case the QM9978 cellulase-negative phenotype, and how it helps to better understand the mechanisms during cellulase gene regulation. When focusing on mutations on the single base-pair level, changes on the chromosome level can be easily overlooked and through this work we provide an example that stresses the importance of the big picture of the genomic landscape during analysis of sequencing data.

09 BIOMASS FUELS↗

Response induction coil magnetometers to perturbations in orientation

© 1996-2018 Society of Exploration Geophysicists. All rights reserved. We explore the data collected by a 3-component induction coil magnetometer system with respect to motion of the instruments in earths static magnetic field. The sensitivtiy of the inductiuon coil magnetometer leads to unprecediented accuracy on tilt measurements. We model the signals observed during seismic events as being perturbations in coil orientation. In theory, these perturbations can include ground roll, ocean motion, nearby cultural seismicity, or any other field with a tilting effect. Using data from a magnetic observatory near Parkfield CA we invert several time series of coil data during different levels of seismic activity in an attempt to determine the magnitudes of rotation at which our model accurately describes the coil data. Finally, we explore the transfer function between the coils and nearby seismic instruments (accelerometers, tiltmeters, and velocity seismometers).

Kappler, K↗

Nitrogen thermometry in an inductively coupled plasma torch using broadband nanosecond coherent anti-Stokes Raman scattering

The development of atmospheric hypersonic flight and re-entry capabilities requires the characterization of the thermo-chemical state of representative test environments. This study demonstrates the usage of multiplex nanosecond N 2 coherent anti-Stokes Raman scattering (CARS) to measure temperatures in an atmospheric, high-temperature (>6000K), air plasma plume, generated by an inductively coupled plasma torch. These are some of the highest temperatures ever accessed via gas-phase CARS, to our knowledge. Temperatures of N 2 in the equilibrium plasma plume are determined via theoretical fits to measured CARS spectra. We discuss the practical implementation of CARS at very high temperatures, including the scaling of the N 2 CARS signal strength from 300 to 6700 K, where the expected peak signal from the high-temperature plasma torch gases is two orders of magnitude less than commonly encountered in combustion environments. An intensified CCD camera enables single-laser-shot detection at temperatures as high as 6200 K, by increasing sensitivity and providing a time gate against intense background luminosity. We also discuss the impacts of unwanted two-beam CARS contributions from outside the nominal three-beam measurement volume. We present mean axial and radial temperature profiles, as well as time-series data derived from both single-laser-shot and accumulated CARS spectra. The single-laser-shot precision is 1.7%–2.6% at temperatures of 3500 to 6200 K. The presented results pave the way for the use of CARS at very high temperatures and the measurement of spatially resolved interface processes in high-enthalpy flows.

Fries, Dan (ORCID:0000000229513294)↗

Investigation of the distribution of laser-induced damage precursors in etched grating sidewalls fabricated using inductively coupled plasma reactive-ion etching

Inductively coupled plasma reactive-ion etching for grating fabrication is explored with emphasis on the type and distribution of process-induced defects that can act as precursors to laser-induced damage initiation. To provide flexibility in the ability to perform a variety of material characterization methods, grating-like features with large pitch were fabricated in silica monolayers. The results indicate that the etch process introduces surface fluorine and subsurface carbon-containing contamination, which reduces the laser-induced damage threshold. The local relative concentrations of the laser-damage precursors introduced during the etch step of the manufacturing process were investigated using angle-resolved damage testing, taking advantage of the shift of the location of the peak electric-field intensity incident on the grating sidewall. The results suggest an increased level of etch-related defects near the base of the sidewall, with directly fluorinated silicon identified as the primary defect.

Dent, R. [Univ. of Rochester, NY (United States). ↗

Modeling Adjustable Speed Pumped Storage Hydro Units Employing Doubly-Fed Induction Machines

This report is a part of a series of documents to be issued in the course of a U.S. Department of Energy (DOE) project titled “Modeling and Analysis of Value of Advanced Pumped Storage Hydropower in the U.S.” The purpose of this report is to propose a model structure for an adjustable speed pumped storage hydro (PSH) unit employing a doubly-fed induction machine (DFIM). The use of a DFIM with its rotor windings controlled by a power converter is the present state-of-the-art design for adjustable speed hydro pumped storage units. Although the theoretical basis for the analysis of DFIMs was developed at least 70 years ago (a paper by Charles Concordia et al. in 1942 describes the mathematical modeling and dynamic response of DFIM and refers to even earlier publications), it seems appropriate to provide the fundamental equations governing their dynamic behavior so that the following discussions on modeling these devices for stability studies are more meaningful.

Koritarov, Vladimir↗

Multi-Collector Inductively Coupled Plasma Mass Spectrometer – Operational Performance Report

The INL made an assessment of the commercially available inductively coupled plasma mass spectrometers (ICPMS) for actinide analysis; emphasizing low detection limits for plutonium. INL scientists subsequently determined if plutonium was present on a swipe, at a 10 million atom decision level. This report describes the evaluation of ICPMS instruments and the operational testing of a new process for the dissolution, separation and analysis via ICPMS of swipes for plutonium and uranium. The swipe dissolution, plutonium and uranium isolation, separation and purification are wet chemistry methods following established procedures. The ICPMS is a commercially available multi-collector magnetic sector mass spectrometer that utilizes five ion counting detectors operating simultaneously. The instrument includes a sample introduction system allowing for sample volumes of < 1 mL to be reproducibly injected into the instrument with minimal waste of the sample solution, while maximizing the useable signal. The performance of the instrument was measured using SRM 996 ( 244 Pu spike) at concentrations of 12 parts per quadrillion (ppq, fg/mL) and with SRM 4350B Columbia River Sediment samples spiked onto swipes at the 10 million atom level. The measured limit of detection (LOD, defined as 3s) for 239 Pu is 310,000 atoms based upon the instrument blank data. The limit of quantification (LOQ defined as 10 s) for 239 Pu is 105,000 atoms. The measured limit of detection for 239 Pu from the SRM 4350B spiked onto a swipe was 2.7 million atoms with the limit of quantification being 9.0 million atoms.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Retuning the DARHT Axis-II Linear Induction Accelerator

The Dual-Axis Radiographic Hydrodynamic Test (DARHT) facility uses bremsstrahlung radiation source spots produced by the focused electron beams from two linear induction accelerators (LIAs) to radiograph large hydrodynamic experiments driven by high explosives. The Axis-II 1.7-kA, 1600-ns beam pulse is transported through the LIA by the magnetic field from 91 solenoids as it is accelerated to ~16.5 MeV. The magnetic field produced by the solenoids and 80 steering dipole pairs for a given set of magnet currents is known as the “tune” of the accelerator [1]. From June, 2013 through September, 2014 a single tune was used. This tune was based on measurements of LIA element positions made over several years [2], and models of solenoidal fields derived from actual field measurements [3] [4]. Based on the focus scan technique, changing the tune of the accelerator and downstream transport had no effect on the beam emittance, to within the uncertainties of the measurement. Beam sizes appear to have been overestimated in all prior measurements because of the low magnification of the imaging system. This has resulted in overestimates of emittance by ~50%. The high magnification imaging should be repeated with the old tune for direct comparison with the new tune. High magnification imaging with the new accelerator tune should be repeated after retuning the downstream to produce a much more symmetric beam to reduce the uncertainty of this measurement. Thus, these results should be considered preliminary until we can effect a new tune to produce symmetric spots at our imaging station, for high magnification images.

43 PARTICLE ACCELERATORS↗

Demonstration of femtosecond laser ablation inductively coupled plasma mass spectrometry for uranium isotopic measurements in U-10Mo nuclear fuel foils

The use of femtosecond laser ablation inductively coupled plasma mass spectrometry was used to demonstrate the feasibility of measuring the isotopic ratio of uranium directly in U-10Mo fuel foils. The measurements were done on both the flat surface and cross sections of bare and Zr clad U-10Mo fuel foil samples. The results for the depleted uranium content measurements were less than 10% of the accepted U235/238 ratio of 0.0020. Sampling was demonstrated for line scans and elemental mapping over large areas. In addition to the U isotopic ratio measurement, the Zr thickness could be measured as well as trace elemental composition if required. A number of interesting features were observed during the feasibility measurements which could provide the basis for further investigation using this methodology. The results demonstrate the feasibility of using fs-LA-ICP-MS for measuring the U isotopic ratio in U-10Mo fuel foils.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Comparison of femtosecond and nanosecond laser ablation inductively coupled plasma mass spectrometry for uranium isotopic measurements

Feasibility tests were conducted using femtosecond and nanosecond laser ablation inductively coupled plasma mass spectrometry for rapid uranium isotopic measurements. The samples used in this study consisted of a range of pg quantities of known 235/238 U solutions as dried spot residues of 300 pL drops on silicon substrates. The samples spanned the following enrichments of 235 U: 0.5, 1.5, 2, 3, and 15.1%. In this direct comparison using these particular samples both pulse durations demonstrated near equivalent data can be produced on either system with respect to accuracy and precision. There is no question that either LA-ICP-MS method offers the potential for rapid, accurate and precise isotopic measurements of U10Mo materials whether DU, LEU or HEU. The LA-ICP-MS equipment used for this work is commercially available. The program is in the process of validating this work for large samples using center samples strips from Y-12 MP-1 LEU-Mo Casting #1.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A model of annular linear induction pumps

The present work explains how the magnetic field and the induced current are obtained when the distributed coils are powered by a 3 phase power supply. From the magnetic field and the induced current, the thrust and the induction losses in the pump can be calculated to estimate the pump performance.

42 ENGINEERING↗

Diagnostic studies of ion beam formation in inductively coupled plasma

This dissertation describes a variety of studies focused on the plasma and the ion beam in inductively coupled plasma mass spectrometry (ICP-MS). The ability to use ICP-MS for measurements of trace elements in samples requires the analytes to be efficiently ionized. Updated ionization efficiency tables are discussed for ionization temperatures of 6500 K and 7000 K with an electron density of 1 x 10 15 cm -3 . These values are reflective of the current operating parameters of ICP-MS instruments. Calculations are also discussed for doubly charged (M 2+ ) ion formation, neutral metal oxide (MO) ionization, and metal oxide (MO + ) ion dissociation for similar plasma temperature values. Ionization efficiency results for neutral MO molecules in the ICP have not been reported previously.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Trace metal analysis by laser ablation-inductively coupled plasmamass spectrometry and x-ray K-edge densitometry of forensic samples

This dissertation describes a variety of studies on the determination of trace elements in samples with forensic importance. Laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS) was used to determine the trace element composition of numerous lipstick samples. Lipstick samples were determined to be homogeneous. Most lipstick samples of similar colors were readily distinguishable at a 95% confidence interval based on trace element composition. Numerous strands of a multi-strand speaker cable were analyzed by LA-ICP-MS. The strands in this study are spatially heterogeneous in trace element composition. In actual forensic applications, the possibility of spatial heterogeneity must be considered, especially in cases where only small samples (e.g., copper wire fragments after an explosion) are available. The effects of many unpredictable variables, such as weather, temperature, and human activity, on the retention of gunshot residue (GSR) around projectile wounds were assessed with LAICP- MS. Skin samples around gunshot and stab wounds and larvae feeding in and around the wounds on decomposing pig carcasses were analyzed for elements consistent with GSR (Sb, Pb, Ba, and Cu). These elements were detected at higher levels in skin and larvae samples around the gunshot wounds compared to the stab wounds for an extended period of time throughout decomposition in both a winter and summer study. After decomposition, radiographic images of the pig bones containing possible damage from bullets revealed metallic particles embedded within a number of bones. Metallic particles within the bones were analyzed with x-ray, K-edge densitometry and determined to contain lead, indicating that bullet residue can be retained throughout decomposition and detected within bones containing projectile trauma.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Additive Manufacturing Consolidation of Low-Cost Water Atomized Steel Powder Using Micro-Induction Sintering

ORNL worked with Grid Logic Inc to demonstrate micro induction sintering (MIS) and binder decomposition of steel powders. It was shown that MIS effectively emits spatially confined electromagnetic energy that is directly coupled to metallic powders resulting in resistive heating of individual particles. The non-uniformity of particle morphology and distribution of the water atomized steel powders resulted in inefficient transfer of energy. It was shown that adhering the particles together using polymer binders resulted in more efficient coupling. Using the MIS processes, debinding and sintering could be done in a single step. When combined with another system, such as binder-jet, this could reduce the amount of required post-processing. An invention disclosure was filed on hybrid systems that use MIS to reduce the amount of required post-processing.

36 MATERIALS SCIENCE↗

Beam Breakup in a Solid-State Powered Linear Induction Accelerator

Scorpius is a new multi-pulse linear induction accelerator (LIA) for flash radiography of large-scale, explosively-driven hydrodynamic experiments. It has been proposed to use solid-state pulsed-power modules to provide the accelerating voltages for Scorpius. It is expected that this approach can provide four programmable 50-kV accelerating pulses to a single gap.

43 PARTICLE ACCELERATORS↗

Optimum tunes for the DARHT and Scorpius linear induction accelerators

A systematic approach to design of optimum magnetic focusing tunes for linear induction accelerators (LIA) is described. The magnetic fields used for focusing and beam transport must be strong enough to suppress beam breakup, yet not so strong that they induce envelope instability. Balancing these objectives, while also minimizing magnet power requirements, results in the optimum tune.

43 PARTICLE ACCELERATORS↗

Induction Heating for Tritium Storage Beds (FY19 PDRD Project Summary Report)

Metal hydride beds used for storing hydrogen isotopes at the Savannah River Site are conductively heated and cooled to desorb and absorb gases during storage cycling. While several storage bed configurations have been utilized over the years, many achieve heating by utilizing electric cartridge heaters positioned laterally along the longest axis of the storage bed (FACE Gen 2 Beds). Others achieve heating and cooling through hot and cold nitrogen flow (Gen 1 Beds). While these beds/heating configurations are well-designed for storage cycling operations, it is unclear if they can be regenerated to operating conditions once too much helium has accumulated in them. Full regeneration of hydride beds occurs around 625 - 650 °C. It is unclear if the currently employed electric cartridge heaters in Gen 2 beds can reach these temperatures. Furthermore, since swelling can occur during routine heating operations, it is unclear if existing cartridge heaters in Gen 2 beds can be swapped for higher-power cartridges that can reach 625 - 650 °C . Similarly, nitrogen air flow (to the best of our knowledge) cannot cause Gen 1 beds to reach these temperatures. Thus, existing Gen 1 and Gen 2 beds need to be heated through an alternative method to removal helium, so the beds can either return to normal operation or be disposed of. The goal of this PDRD was to investigate if induction heating can be used for various heating processes involving hydride storage beds (e.g. regeneration, gas cycling, helium heel removal). In the original call for proposals, this PDRD fell under "Gas Processing" area of interest # 3: "Develop methods to deploy alternate ways to heat existing process equipment to minimize impact to glove box environment."

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗